Array 1 424452-424753 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022584.1 Paenibacillus physcomitrellae strain XB chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 424452 33 100.0 35 ................................. CGGCATAACGGCAAGTTAATTACTACAAGCAACGC 424520 33 100.0 35 ................................. CTCAACACGTAATTGACGGCGAGTTTTACGAAGTG 424588 33 100.0 33 ................................. ATCCGCACTGCCGGCACGTTATAACGCCTGTGC 424654 33 100.0 34 ................................. CAATCCGCTACGTGATCGCCGTCACCATCTCGCG 424721 33 97.0 0 ..........................C...... | ========== ====== ====== ====== ================================= =================================== ================== 5 33 99.4 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : GATCATCCAAATCCATGGCTCCCTGATTAGCCTCGCTGGCAAACTTCAAAACCCGAAATCGGCCTTTCTGGCCATCCAGCTCATCCGTATCGTAAACCGTAATATGGTGGTTAACGGTTTGATCTTGAAATAACAAGTGATGCAAAAGTGTAATCCTCCAATCGTCCATCGTAGGGGTTAAGGGGCTTGATAACTGCCCTTTCACCGCTACGATCTCTAACCTGATATCGAACAGTATAAGATCTAGCAGAGCCTTACGGCAAGGAGTTGGGAGGACAAGGTGACAGGGGTGGTTGATCAACAGCAGTAGGAGGGAAGAGGTGCGAAAGGGAAGCTCCCATGAAAACCCCGGGACATTCGCACCTCACAATCTGTCAGATTTTGAGGATTTTCTTGCGTTTAGTCTGAGATAGGTGAAGAATTAATGCTTTGTTGAGATAAATGTTTTTGTAAAACAAAGATTTTCATGATAAAAATAGAAAAAAGCGAGTTATTTCGCT # Right flank : TCAATTAAATGAACTGGACAAAGGGATTAACATTTGTCCAGTTCTATTTTTTTGCGTAAAGAACCAAACATGCACCTGATCAAGGGACCCTCTAATCCAAAATGGATATTATCCAAGAACATATTTGACATATTCCTTTAATGCAAAGATTTGGAATTATCGTCTGTTGAAAGGGCGCGGAGACCGATCCTGTCAGCGTTATTCAAGCGGACCGATTCGATTTTTAACCACAGCAAAAATAACATATTTACGTTCCGAACGGCCGTCACCTACACTTGTGTAAGCGCTAACAAGTTAGCGGTGGCAGCATTCAGACAGATAGCCAATCTGCTTGCCTTAGACCTCTTTCTGGGCCACGCGGCATAAGGCCATGCTGAACTTGAATCTGTCATAGGGCGTCTGCCAAACGGTCCAAGATTAAGCCACTTACTAAGAAGAAGACAGGAGGAATCTGGTAATGAGACAAAGGTTAAAACCATGGGGGATCATCCTGTGCCTGA # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 1680806-1679773 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022584.1 Paenibacillus physcomitrellae strain XB chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1680805 32 100.0 34 ................................ TCCAATTCCATTTCCATCATCAAGCAAGTCCCTT 1680739 32 100.0 34 ................................ AAGTTCTGGAGTAAGGATCAAGAGCCGCGGTATG 1680673 32 100.0 33 ................................ TTCGCAGCCTGGACGTCTCCGTTGATGATGCTC 1680608 32 100.0 36 ................................ CTGCAGGCTGGTCAGATAATAAATGATGGCCTCGGT 1680540 32 100.0 33 ................................ ACTTGGTTTTTACTCATTTTTTCTTATATTTGT 1680475 32 100.0 35 ................................ CCCTCCTTTCCAAGAATTAGTTAACAACAAGGAAT 1680408 32 100.0 37 ................................ ATAATTACGGGTTTGAATCCGTCCAGATACGCTTACC 1680339 32 100.0 33 ................................ ATAGAAAGCCTGGTACTGTTCGTCCGTGTAATC 1680274 32 100.0 37 ................................ AATTAATTTAAGGAGTGAGATCCATGACGCAAAACAA 1680205 32 100.0 33 ................................ TTCAATGGGTTCGCCATGTACTTTCATGTATCG 1680140 32 100.0 35 ................................ TTGGTAAGTGTTCATGTACGGCTCACCAAGCAGCG 1680073 32 100.0 35 ................................ GCTACCGTGGGCAGTTGTACCGGTTTGATCACAGC 1680006 32 100.0 38 ................................ CTCACGCATGGTTCCCGGTTGTAATGGCAACTAGAAAG 1679936 32 100.0 33 ................................ ATTCGTAGAGTTTTTTTACAATGCTCGTTTGGA 1679871 32 100.0 35 ................................ CGAACATGTTTTCATCGGCGGCGGGACGGGTTCGG 1679804 32 93.8 0 ...................T.....C...... | ========== ====== ====== ====== ================================ ====================================== ================== 16 32 99.6 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : GCCATGCATGCTGTTTCTGAGCTTCAGGTCGGGGTTCCTCAAACGAGTCGTGATGCCTTTGATATTTTACTTAGTCAAGGAATCATTGACGAAAAGCTGGCTGGCAATATGAAAGCCATGGTAGGGTTCCGCAATATAGCGGTGCATGATTACCAAGCTGTGCAGCTAGAGATTTTAAAAGCTATACTGAATAAGCATCTTGCAGATTTTATTGCATTTACGAATGCTTTGAAGAAATTTGCAAGTAGCTAAGCTCATGTTCAGTTAAAAATAGCCGGGATTTCTAAGTAAGTAAGCAAAGTGGTCACTTGGCCATTTGGTGCGAACCTAAAGCTCCCATAAAATCTCCGGGGGATTCGCACCTCAGATTTTGTCGAAAAAAACGCTGAATCGTACCTCAGAACATTAGCTGAGAGTTGATTGATCTAGTTGAGTAATGAGATATAATGGAAATGACTCGAATTCATCTTGTTAGGAGATGGAATAGAGGTATTTTCGCT # Right flank : TGCTCTTCGACGGTCCAAGTCGCCACTGCTACCTTGTCTCCCTCCCCATAAGCGTGTAATTACCTATGAAGCACCAAGTTTTAACCCGCCCAGACCCCAACTGCAATTTTCAAATTTTTCTCTAGCGTTAATCCCTAAAAACTACCCTCGACCATTTCTTACAATTTGAACTTGCCTTTTCTTGCCCGTACTTCATTTGGTCCGTATTAAATCTACCAGGCAACACCAACACAAACTTCTGAAAGGAATCAAAAATGAACCATAAAGAAGAACTCACCGGCGGAAGAACCGGACAAATTCATAAAGTTGAAGAGACGGTTATTCGTCCTGCGAATGCTTGGACTCCGCACGTACATAAGTTTCTAAACTTTCTTCATGAAGAGGGGGCAGTTTTTGTGCCTAAAGCGTATGGGATAAATGATCGGCAGGAAGAGATCTTATCTTTTATGCCAGGTGAGGTTTTTCATTATCCTTTACCGGATCCAATGCTGAGCGACTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2205472-2204239 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022584.1 Paenibacillus physcomitrellae strain XB chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 2205471 31 100.0 35 ............................... TCGTGTCAAGGCCGCATTATCCACGCTTTCGTACG 2205405 31 100.0 36 ............................... CAACCGGTTGTCGCCCGTTAAATTGCCGTACGCACG 2205338 31 100.0 34 ............................... GATCGCGTTAATCGTATCTAAAACGTTGTCATCG 2205273 31 100.0 34 ............................... ATTTTCACTTGGAACGGCGCGTTCGAGAATGTAG 2205208 31 100.0 36 ............................... CACTTTTGCTGCGTCAATCTGCGCCTGGATATCGGG 2205141 31 100.0 36 ............................... GGTTATTCCTACGCCGTAGCCCTCCGCGATATAGGG 2205074 31 100.0 36 ............................... TTGACTGTCCGCTACGTCCAAAATCTCAATAACGTG 2205007 31 100.0 34 ............................... ATCGAATATGATAATTGAGCCGTGAACGTCAGCG 2204942 31 100.0 36 ............................... CCAACATAAAAAAAGCTCTTATACTTGGAGACAATG 2204875 31 100.0 36 ............................... TTTATCCGAGTCATTGAAGCGTTGATTCCGCGTCCG 2204808 31 100.0 34 ............................... AAACAACGGCTATACATCGGAGTTGGAAATGGCG 2204743 31 100.0 36 ............................... TGCAGGCTGACCGCATCCAGGTCAGCCACCACAATG 2204676 31 100.0 38 ............................... CGTACTAAACAGGCCGATGGTTATTATTTACTTCCGGG 2204607 31 100.0 36 ............................... TGGAATGCGTATCCTCGAAAAATAGGAAAAGTCGAG 2204540 31 100.0 38 ............................... CGGAATACGATTCAAACTAGCAATGGCCAGTGGGTAAG 2204471 31 100.0 38 ............................... CCTGTAAACACGCCGGTGAGAAAGTCCATCACGCCTCG 2204402 31 90.3 34 .......T..C..A................. CGGACGACGCAGTGTACGAATACGCGAACGAATG 2204337 31 87.1 37 .......TC.C..A................. GCATAAAACCTAATAGATTCCAGCTGCACCCACGTAG 2204269 31 71.0 0 .......TC.C.CA...........C..TTA | ========== ====== ====== ====== =============================== ====================================== ================== 19 31 97.3 36 TCGCACCCTATGTGGGTGCGTGGATTGAAAT # Left flank : GGATGAATATCCTCCATTTTTGTGGAAGTAGGTGTTGGACGATGATGGTAGTCATTACTTATGATGTTAGAACCGTTGACTCCTCAGGACAAAGAAGACTGCGGCAGGTGGCTAAAGTATGCCAAAATTATGGCCAGCGCGTGCAAAATTCTGTGTTCGAATGCATCGTAGATGCTGCAGAATGGGCAGCGCTTAAACTCAGGTTAATTGAGTTGATTGATCCAGAGCAAGACAGCCTGCGATTTTATCAGCTTGGGAACCAATACAAAAATAAAGTAGAACATGTAGGAATCAAGACTTCGCTTGATTTGGAAGGACCCCTGATTTTATAGTGCGAATGTGAAGCGAACATGATTTCCCTGGGGGATTCGCACCAAGAAAAACATGATTAATTTCATTTTATGGTAAAAATAAACAAATATCTTATGGGAAAAGATTGATTTTGGAACAAGTTGAGTTCAAAAATGCGATTTTTACCCTTAATTTGTTAAGAATCGCTG # Right flank : GCTCCATGGATTATCTTCAAACTGCCCTGGTTCACCTCATGTGCGTACATAGGGATTTGAAGTATTACTTTTTAACTTCTTTCCAGGCAATCAGCAATTCATATTATTAATTATAGCTTTACGCAGTTATGGCCTTTACGCAGCTACATCAGCTTAAAATGGAGTAAGCCCCATTTAATAAAGCAAGTAGGGCTGAAGATAAGAGACTTAGCGGAGATCATCAAATTGAACTTGCTGGAAGCAGTGGAGGCCTTATTTCAAAGGGGAAGCGCTTTCCATATTCCCATTCAGGGAATCTCTTTTCACATCGTTTCTTTCTTTATCACTAGCGGGATTATCGACAGGGTTTAAACGATCGACGATTGGATCAGATGGTTTAGCTTGGGATGAAGAATCGTTTAAGACAGTGCTATAACGCATACGAGCAGCATGGATGCAATTGCTAATATAACAACTCCTTTTCTTTTCCCTCCTTTTAAATAAATGGTCACTCTGATCAC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCTATGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //