Array 1 163628-162151 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXYT01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RM13670 Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163627 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163566 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163504 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163443 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163382 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163321 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 163260 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 163199 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 163138 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 163077 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 163016 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162955 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162894 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162832 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162729 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162668 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162607 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162546 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162485 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 162424 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162363 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162302 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162241 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162180 29 96.6 0 A............................ | A [162153] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181375-179760 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXYT01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RM13670 Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181374 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 181313 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 181252 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 181191 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 181130 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 181069 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 181008 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180947 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180886 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180825 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180764 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180703 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180642 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180581 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180520 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180459 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180398 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 180337 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180275 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 180214 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 180153 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 180092 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 180031 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179970 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179909 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179848 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179787 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //