Array 1 65645-63724 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKNV01000022.1 Escherichia coli strain MOD1-EC1920 MOD1-EC1920_22_length_74429_cov_22.862, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65644 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 65583 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 65522 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 65461 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 65400 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 65339 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 65278 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 65217 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 65156 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 65095 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 65034 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 64973 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 64911 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 64850 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 64789 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 64728 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 64667 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 64606 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 64545 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 64484 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 64423 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 64362 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 64301 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 64240 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 64179 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 64118 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 64057 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 63996 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 63935 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 63874 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 63813 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 63752 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 212462-212734 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKNV01000004.1 Escherichia coli strain MOD1-EC1920 MOD1-EC1920_4_length_229747_cov_23.2411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212462 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 212523 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 212584 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 212645 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 212706 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //