Array 1 19671-18959 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUH010000032.1 Lactobacillus delbrueckii subsp. lactis strain CIRM BIA 230 CIRM_BIA230-i1-1_scf32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 19670 36 100.0 38 .................................... TGATCAAATTTATAAACAGTTGTATCTCTTCACGTTAA 19596 36 97.2 37 ..................T................. TGAACGGGGGATGTATCCATGGGAAATTTTTCACGAT 19523 36 100.0 36 .................................... ATGGATCGTGATTACATCCATGTTTGAGGAGTATTG 19451 36 100.0 48 .................................... CCCAGGGAAGAATCGTAAAATCCATAGGGTCGGTAGCAACATAGTTGA 19367 36 100.0 37 .................................... ATCATGATCAGCTTTAACAGTCACGTGGAGGCCTTAA 19294 36 100.0 39 .................................... GCGGAAGTCGAATTTCTGTTTATTGATGACTTTGGGACT 19219 36 100.0 36 .................................... AGGTAAATAAAATGACTAGTATTGTTACCACGGAAA 19147 36 100.0 40 .................................... GTAAACAAAAATGTTAAAAACTACTACTAATAAGTTTAGG 19071 36 100.0 41 .................................... GCTTTTACCGGCTCTTTTGGGGTTCGTCATTGGCAGTGGCC 18994 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 10 36 99.7 39 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : GAAGATCTTAAACTACAAGACTCCAGAAGAGTACTTTGACACCGAACTTGACCGCATTTACCGGCGTAGATAGTCAAAATCTGCCAGATGTTATGGTAAGTGTTCAATTTATTCTTGCAATTGGCGAATAGAATTAAATCACAAGGAG # Right flank : AGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGAGACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 154-1377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUH010000031.1 Lactobacillus delbrueckii subsp. lactis strain CIRM BIA 230 CIRM_BIA230-i1-1_scf31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 154 36 100.0 40 .................................... TAAACAATCGATCATTTTCACCAATCCAAATTCGCTTAAT 230 36 100.0 33 .................................... TCTGAATTTTGAAAAAGCTCCAAAAATCTCTTT 299 36 100.0 40 .................................... GACATGAGATTGTGCTTGATTGCTTCTTCATACTTCGTAC 375 36 100.0 34 .................................... TTACAAGGTTTTCCATTTTTTGCCCTCTAGAATG 445 36 100.0 33 .................................... TTGGGCGTCATCGGTAGGGTTATCGACTTCCAT 514 36 100.0 42 .................................... TCGACATGCCAGTAATCCAACACATTCTCTACCGCTTCTTCG 592 36 100.0 39 .................................... ATCGATCTGGTCCATCAGGTATTGCCAGTAGCCTTCCTC 667 36 100.0 39 .................................... GTTGTTGTCTTCTTTTACAAAATATAATCTAACAATTTT 742 36 100.0 39 .................................... AATAAATTTTAAAAATTTTCATCTTTTTACCTCTTTTTC 817 36 100.0 36 .................................... ACATACGGCAGAAACCTTTGATATATCTTGAGTTCA 889 36 100.0 39 .................................... AGCTCCTCCTCTACCAAGTCTTCATACTCCCGGATCAAG 964 36 100.0 41 .................................... CAAATTCAAAGTTCATAATTTCGTTAGTCACTTTTCATTCT 1041 36 100.0 41 .................................... ACCAATAATCTGTACTGAGTTGTTATTAAATTGCTTGATGT 1118 36 100.0 41 .................................... TCAAACAGTTTCCCGTCATCAGATACCCAGTAACCACTTGC 1195 36 94.4 35 ............................G..G.... TTTTATTCCTTACGGAGACTCATTCTGCTTTGCAC 1266 36 80.6 38 AT...................A......G.A.A..T GCAACAAAGCTTGTCGCTACTTACAATCCGCACTATGC C,G [1268,1271] 1342 35 75.0 0 ........A.A...C...-.C.G...G.....A.G. | C [1364] ========== ====== ====== ====== ==================================== ========================================== ================== 17 36 97.1 38 GCTAACAACTTATCTCCGCTAGAAGGAGACGAGAAC # Left flank : TAGAAATGTTTGTGGTAATTCATATTCTACCAGATGGTTGAAATGGATTTTTTGTGCTCTAATCCAGTGAAAACGATTTTTCTTACTGGATCGGAACAGTGTTCAGTTTAATTTTACAATCGGCGGATTTAATTCTATTGTACATCGATCAAGG # Right flank : CATTTAAAGAAAAGAGCTATATTATTAATCAATCTATTTTCAATGCACAATCTCCGTTAAAAGGAGACATAAGCCAAACGGCCAGTTGCTGGCCGTTTTTTCGTATAAAAAACCTCCTTCATTCCGTCCAAAATGGACTAGACTGAAGAAGAATCGGTGCTATGATGAAGGTGGAAATGCTGATAGCGGATGCAGAGAAGCGGGCAAAATTGCAGTCAGAGGAGGCAGCGAGATGAAGCAGAAAATACCCGCGACCCCAAGAAAATGAGCAGCTACTTCTGGTAAGAAGCGCCAATTCTTGTGGTCGTTACTATTTCAGGCTTGATCTACAATATCGGCATGGTCGCTGGACCATACTTTCAAGGGCAGCTGGTCCAAGGCTTGTATGACTTGCTGAACCATAAGATCCTGGCCAACCGTTTAATCCAATTATCGCTACTTTATCTAGTTCAAGTCTGCCGGGCGATCAAACGCTTCAGCGTGCGGATTTTTGCCAACCA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAACAACTTATCTCCGCTAGAAGGAGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 14001-13252 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUH010000044.1 Lactobacillus delbrueckii subsp. lactis strain CIRM BIA 230 CIRM_BIA230-i1-1_scf44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================================================================================================================== ================== 14000 36 100.0 30 .................................... GCAGCCACTGCTGGTGCTTAATGGCCAAGT 13934 36 100.0 30 .................................... GCTCGCTTTCATTTAAAGACATTGCAAACC 13868 36 100.0 30 .................................... CTCAATTACGATTTTTCTCAGTCTCTTCCT 13802 36 100.0 30 .................................... GTTCGGGTTCAATTTCACTAGCAACATCTA 13736 36 100.0 30 .................................... AACTGGCCCTCCATGATAGATGTCGTAGAG 13670 36 100.0 30 .................................... ATAAACGATCATTTCAGTTCTCCTTTTTCG 13604 36 100.0 30 .................................... GCGGCTTGGTGTTCAAACAGCACGAGGAGC 13538 36 100.0 30 .................................... GTTGACGGTCAAGCTTTCATTGTCAAGTAA 13472 36 94.4 149 ................C...T............... GTTGTGTAGGTTCAAATCCTGTACTCTCCTTGTTTTGGAATATTTCCATTCAATGTTGTCAATTTTCCCGACGTATGTTGGGGGTGGCCATCATAATGGCCTAATACTAAGACGACAATTCTACTCATTCCACGCAGGTGGGGGTGATC 13287 36 75.0 0 ..........A..........C...G..GAC..AAG | ========== ====== ====== ====== ==================================== ===================================================================================================================================================== ================== 10 36 96.9 43 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Left flank : CAGTGAATCTTTACTTCAAAAGTACATGACCAAATTAACTAGTTATGTAGTTGATGAGCTAAGCGCAGATGGCAGAAACAGAATCATTACCTGCTATCGCGATTTACTAAATGCTGTTCAAGACGAGTTGCTTATGGAAGATTTGCCGCTTGAAATAAGTTTTGACACAGACTTGAAGAAACTCTTCAAATTTGGTGGTCTACACTTCAACAAGACACTCACTCGCGATCCATATGGTATAATCGAGACAGTACTTAGGATACATGACAGGTTAGATCTTAAGTCTACTGTTGTTTTTAGTAATGTAGCTCATTACTTAGATGCAGAACAGTTTAACGAAATATCCAAGCTGTGCTTAGAGCTAAAAAAGTCTATTATTTTTATCGAGTTTTGTAGCCATAAGGATCAGGTTGTATATGGTGATGCAAAATTCAGTTATATCGATGAAGACCTTGTTGATTGGTACTAGCCTTCTATTAAAGCCATGTTAAAAAATAACG # Right flank : TGCTTTTCATGATTGAGAAGCACTTTTTTCTATTGAACACAACAACTTAAAAAAACGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCAAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAATTGCTTTAAACGCCGGGATGCGGCAGGACTCAGTCGCTGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGGCTGGCTGAAGCCCAAATGTTAATCGGTGACCTGGGC # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-1.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //