Array 1 312127-313375 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTQB01000002.1 Escherichia coli strain SWECR0148 contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 312127 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 312188 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 312249 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 312310 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 312371 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 312432 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 312493 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 312554 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 312615 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 312676 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 312737 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 312798 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 312859 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 312920 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 312981 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 313042 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 313103 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 313164 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 313225 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 313286 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 313347 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 339075-340933 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTQB01000002.1 Escherichia coli strain SWECR0148 contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 339075 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 339136 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 339197 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 339258 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 339319 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 339380 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 339441 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 339502 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 339563 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 339624 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 339685 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 339746 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 339807 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 339868 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 339929 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 339990 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 340051 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 340112 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 340173 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 340234 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 340295 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 340356 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 340417 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 340478 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 340539 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 340600 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 340661 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 340722 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 340783 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 340844 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 340905 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //