Array 1 3073-4494 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYVY01000016.1 Lactobacillus jensenii strain UMB3442 NODE_16_length_31658_cov_25.519869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3073 36 100.0 30 .................................... AGTCACTGATGTTCAAAGTTGGATAAATAG 3139 36 100.0 30 .................................... CTTTTGTGTTTGAATATGGATTATCAAATG 3205 36 100.0 30 .................................... ATTACGCTGCTTAGTTATCTTAATTGAAGT 3271 36 100.0 30 .................................... AGCTAGTAGCAAGTAATGGATCAAATGATT 3337 36 100.0 30 .................................... TGGCTTTACTTATACTTCAGCTGGTGGCGA 3403 36 100.0 30 .................................... TTTAATTGGTCAAGATGGACAACCGATTGC 3469 36 100.0 30 .................................... CAAGAGTTTGAAAAGTTCGTTGATCAAGGC 3535 36 100.0 30 .................................... TTGAATCAGCAAGTGAATAGGATCCATCTG 3601 36 100.0 30 .................................... TCTTGATTTCACGAGTTAACATTGGTTGAT 3667 36 100.0 30 .................................... ATTAGGATACTGTGTAGGATATACCTTCCA 3733 36 100.0 30 .................................... TTGTAAAATTTGTGATAATGATTTTCGTGT 3799 36 100.0 30 .................................... TGTTGCAAGCGCCGACCCTTATGGTGGTAT 3865 36 100.0 30 .................................... AGTAGCTCAACAACTTCAAAGCGAAGTGGG 3931 36 100.0 30 .................................... TTTTTGAGCTGTTTTATCGAGCCAAGAAGG 3997 36 100.0 30 .................................... GGATACTGGCAGGCCTTCCATTTATCAGTT 4063 36 100.0 30 .................................... TGTTTAAAGTAGTAAACAAGACTATTGAGC 4129 36 100.0 30 .................................... CTCTATTTTAATCTGCATACATACATGTAA 4195 36 100.0 30 .................................... AAGACAATACGTAATAAGGATATTGCACAA 4261 36 100.0 30 .................................... CTAAAGCTTTTTCAGCATCATTTTTAGTGT 4327 36 100.0 30 .................................... ACTACCAGAATGGGCAGTTGCAGAAAAGAT 4393 36 100.0 30 .................................... GAAAACTTGAAGTCGCAACTCAATAGCGAG 4459 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.9 30 GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Left flank : TAATTCTTATCAGAATAAGATTATTTCAAATCTGTTTGATACTTTAAATGAAAATCAGAGAAATAAAATATTTAATACGTGGCGTCAGCTGAGTACTGATATTCAAGATATAATATTTATGACTGATTTACCAATTGAAGTTGGTGAAAATCTAGATTTAAAGAAGCTATTCAAATTTGATGGAATTCATTTTGATGATTCTGTATTAAGTGATCCTTATGCTATAATTGAAACAGTTGTTAAAATTCATATTGAATGTAAATTGAATTCGGTTGTTACTTTTGCAAACGTAAGTCATTATCTTACAAAAGAACAATTGAATAACTTAATTACCTTTATAAACGAAGTAAATATGCCTTTGATATTAATAGAATTTTCATCTTCAGATTTTAAGGTTGTTAGTGGGGATGCAAGAGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTTAAATCTGAGAAGCTGATGATAAAATGTCGGTTTTAGAAGGTT # Right flank : AGTAACAAAAACCAATTTAATTAATATGATCATATTTTAATTTGAGGAGAAAACTAAGTATGTGGACATTTCTTAAATTTTTTCAGACACCAGTAGGCTATTTAATTGGAATGGCTATTCTTGTCATATTGCAATACGTGTATGAATGGATAAGAGACGAGCGCTAAAATATTGTTTGGTTTATTGGCAATTAATATACTTTAGAAAGCTGCAAAACACTATAACTTATAGGAGATAAAAATGGAAGGTTTAGCATATGTTATTCTATTTATAGGAGCTTTTATATATTACTATTGTAAAAATAACCGTAAAAAATAATACGATTTTTAAAAGTTACTGAGGGGGCATAATATGGATGCAATTATTGATTTCTTTACTAACCCTATATGGATTACATTTATAACAATTTTATATTTTTCTATGGAGTTTATAGAAAATAAGCGAAAAAAATAGCGCTTTTTTATTGGTAAAGTAATAACAATTATGTCAGTTTTAAAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //