Array 1 57008-60608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXBW01000010.1 Alicyclobacillus tengchongensis strain CGMCC1504 Contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 57008 36 77.8 30 T.AC.G.GCAT......................... CAATACGCGCGTTTCCTGCAACAAGTGCGT 57074 36 97.2 30 ............C....................... CAGGATGTTGATAGTGCGCTACAACAGGCC 57140 36 97.2 30 ............C....................... TCCATGCCAGCAAACCATCTCATCGATTTG 57206 36 97.2 30 ......................T............. CAATAATAATAGCCTTGATGAGTTCGTTTG 57272 36 94.4 30 ..A.............................C... AGGTGTGACAATGACTTGCCATATAGGCTT 57338 36 97.2 30 .............A...................... TCCATGCCAGCAAACCATCTCATCCATTTG 57404 36 97.2 30 ......................T............. CAATAATAATAGCCTTGATGAGTTCGTTTG 57470 36 94.4 30 ..A.............................C... AGGTGTGACAATGACTTGCCATATAGGCTT 57536 36 97.2 31 .............A...................... GCTGCACTATAACTACTAATTAACTTTTTGC 57603 36 97.2 30 ......................T............. CAATAATAATAGCCTTGATGAGTTCGTTTG 57669 36 100.0 30 .................................... GCGGAATTGCGCGATGCGCTCGTCAAGGTG 57735 36 97.2 30 ...................................C TGGACTCCACGAAAAACAGCGGACTGGCGA 57801 36 94.4 30 ........C......A.................... GACCGTCAATAGTCCTCCACTTCACAATAA 57867 36 97.2 30 ...................................C TGGACTCCACGAAAAACAGCGGACTGGCGA 57933 36 94.4 30 ........C......A.................... GACCGTCAATCGTCCTCCACTTCACAATAA 57999 36 100.0 30 .................................... TGGACTCCACGAAAAACAGCGGACTAGCGA 58065 36 100.0 30 .................................... CTTTGCCCCGTCTGTGTGGGCTTCGACTAC 58131 36 94.4 30 .......................T......C..... TTTAGAGATTGAAAGTCGAACTGATTTTAA 58197 36 97.2 30 .................G.................. TTTAGATATTGAAAGTCGAACTGATTTTAA 58263 36 97.2 30 .................G.................. TTTAGCCCCGTCTGTGTGGGCTTCGACTAC 58329 36 94.4 30 ........G.....................C..... AATACCAGCGCAAAACGTAACACAACAAGC 58395 36 94.4 30 ......T..................C.......... AATACCAGCGCAAAACGTAACACAACAAGC 58461 36 94.4 30 ......T....................G........ TTTCAAACACCGCACCATTGGCCACATTGT 58527 36 97.2 30 ...............A.................... AATACCAGCGCACAACGTAACACAACAAGC 58593 36 100.0 30 .................................... TTTCGAACACCGCACCATTGGCCACATTGT 58659 36 100.0 30 .................................... CATACGGATGTGCGATATATGGCATGTTCG 58725 36 100.0 30 .................................... TGGGAAGAGGTTAAATACGATGCGTCATGT 58791 36 100.0 30 .................................... GGTACAGACTCACATGGAACAGGGATACAT 58857 36 100.0 30 .................................... TGGGAAGAGGTTAAATACGATGCGTCATGT 58923 36 100.0 30 .................................... AACTGTCCAAATGAGATACGTCTTATCCGT 58989 36 100.0 30 .................................... TTCAGAGAAGATTTCATCGTTCAACATATT 59055 36 100.0 30 .................................... TCGAGATATTTAACCTTTGACATATCATAG 59121 36 100.0 30 .................................... AAATGCCTTCGACTTTACCCCAACGAATAA 59187 36 100.0 30 .................................... AAATGCCTTCGATTTTACCCCAACGAATAA 59253 36 100.0 30 .................................... ATTGTAAAGGATACTTTATCATTTTATTTG 59319 36 97.2 30 ......................A............. TGTGACGATAGGCGCGTGCTGCTTTTTTAT 59385 36 97.2 30 ......................A............. TGTGACGATAGGCGCGTGCTGCTTTTTTAT 59451 36 97.2 30 ................G................... GACATGGTCGCAAATGTATAATATAGTGAG 59517 36 100.0 30 .................................... TCATTCTCACTGTACGGTTTGCCTAGCAAG 59583 36 100.0 30 .................................... GACATGGTCGCAAATGTATAATATAGTGAG 59649 36 97.2 30 ...............A.................... ATCAACACTGATTGATTGTTACATAATTAC 59715 36 97.2 30 ............C....................... GACATGGTCGCAAATGTATAATATAGTGAG 59781 36 97.2 30 ...............A.................... ATCAACACTGATTGATTGTTACATAATTAC 59847 36 97.2 30 ............C....................... ATCAACACTGATTGATTGTTACATAATTAC 59913 36 100.0 30 .................................... TCATTCTCGCTGTACGGTTTGCCTAGCAAG 59979 36 100.0 30 .................................... TAAAACGTCTGACCGAACTTTTGACCACGA 60045 36 100.0 30 .................................... CTGATGGAATTAACTGTTTACGTTCATGGT 60111 36 97.2 30 ..............G..................... TAAAACGTCTGACCGAACTGTTGACCACGA 60177 36 100.0 30 .................................... TACTTGCCGTTATCTGCGCCTAGAATTTTT 60243 36 97.2 30 ............C....................... TTCCCCGCCCCTCCACCTCTCGGTGCTACG 60309 36 100.0 30 .................................... TTCCCCGGCCCTCCACCTCTCGGTGCTACG 60375 36 100.0 30 .................................... TTCCCCGGCCCTCCACCTTTCGATGCTACG 60441 36 100.0 30 .................................... CCAGCAAGGGAGGCTATATCAATATTTGTT 60507 36 100.0 30 .................................... CCAGCAAGGGAGGCTATATCAATATTTTTT 60573 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 55 36 97.7 30 GTCATAGTTCCCTCACAAGCCTCGATGTGGTATGAT # Left flank : AGTGTATCAAATGCTGTCTTGGCCGCCGAACCGACTGGAAGTTTACCGTGCCCTGCGAGAAACGCCGTAGTTACGAGTCCCATCATGTCTCCCCCAAAAACAGAGTATCCTCCACACGAATCTATGTCGGACATACGGGGAATAGGACAATTCTCTGGGCTGGTGCGTTATATGCAGGACGACACTGCTCTTGCATGTTGTTCATGTTCAATCGAGAGCCCGTTCTTTTAGGGGTTGTTCATGATTGACCAGTTCGCCCTTCCGATGCTGTTCAAGGGCGTTCCGTGCAAGAACCTCAACGGGGTCGCATGCCTTGACCACGCGAAAGCTGTCCCCATCTAGATGTACACGCAATGTATCTCCGGGGCGAATGTTGAATTGGTCACGCGGTTCTTCCGGTAATGAAAAACGCACGCTGGTATGTGCGAAAATCCATGAATGGTAGGTTAACGGCGCGGGGATCGCTCGCAAATTCGAAGTCTCACGCATGCAAACACAAG # Right flank : TACGTGATCGCTCAATCCCTTGTAGTATCAGGGGTTGGGCGATTACGTATTTTTGAAAAAGCGAATCGCCAAGCCGTTTCAAAGCGGCGGTGTCACGTTTTTTAAAAAAGCACCAACTGCTCACTTTGCATTCTCCGTTCATTAGGTGCATAGTTACCAACAAGAATTTTCATCCTCATGAACTGCTTTTCTGTGACCAGTAACGTTCGAATCGATCCTTTATCTGGTAAGTTCGCTTGAAGCCTCCTTTCGTGCTTTTCCGCCATCTCATAACTGCCGCAGATCCGACAGTAACAAGAATACTGCATCATATAATACCCATCATTCAATAAAAATTGACGAAACCGAGTTGCAGCCTTTCTTTCCGCCTTTGTAGTCACTGGCAGATCAAAGAGCACCATCAAGCGCATAATCCTACTCATAGACCCCCATTTGAACCTCCGTAAGCCTCGGCAACTGTAAAGCACTTGGATCTTCGGTTGAAATCGCATTTGAAAAGC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATAGTTCCCTCACAAGCCTCGATGTGGTATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: F [matched GTCATAGTTCCCTCACAAGCCTCGATGTGGTATGAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //