Array 1 1890-4437 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJLT01000075.1 Pediococcus damnosus strain NBRC 3889 sequence075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1890 36 100.0 30 .................................... AGGTATCGTTTGTAATCCTACGAGTGCAAT 1956 36 100.0 30 .................................... GTGATACCAGTGCCGTTTAACGCTGACATC 2022 36 100.0 31 .................................... ACTTTCCAAAAGCCAAGAAAGCTGGTTGAAA 2089 36 100.0 31 .................................... CACTTCCACATTTTTGGCACCATCAAACGCA 2156 36 100.0 30 .................................... CATAAAACATGATAAAGACGTTCAGCATGA 2222 36 100.0 30 .................................... TGTATTACAGGGTTTACATTGCCTACGCGG 2288 36 100.0 30 .................................... AAAAGTTTGTGCTGCCAATGGCAGGAACGT 2354 36 100.0 30 .................................... CATTAACAATCGCAAACTCACCATTTCCTT 2420 36 100.0 30 .................................... GTTTGTCCGAACCGTGCGTCATGCACATCT 2486 36 100.0 30 .................................... TACTCAATCGCAAATTGATTCCGCACCAGA 2552 36 100.0 30 .................................... CTGACCATAAAGCTGTATCAGCAACCACCA 2618 36 100.0 31 .................................... TTAATCAATAACAAACAGATGAATACAGGTG 2685 36 100.0 30 .................................... CGCTGCTAATGCTAATAATATTTCTGGTGC 2751 36 100.0 30 .................................... ATATCTACCCCTAGTTTATCGTCTTCTCGG 2817 36 100.0 30 .................................... TCAATGATCTGCCTGATTTACGCAAGGTTT 2883 36 100.0 30 .................................... ATCGTTATTAAGTCTTTCAACGTTATGCGT 2949 36 100.0 30 .................................... CGCTTGGGTTCACATACATCACAACGCGGT 3015 36 100.0 30 .................................... AATGTTTTTGTTTGAGAGACTGCTGCATAT 3081 36 100.0 30 .................................... TGTTAGGCCTTCCACAGTAAAGCTAATTTT 3147 36 100.0 30 .................................... ATTCGACTATCCCGGATTGATTGGAGATTC 3213 36 100.0 30 .................................... CTCGGTACGCAATAACCTTGCCGCCACGTC 3279 36 100.0 30 .................................... AAAACGTTGATTGATAACGGTGTAGCAGAT 3345 36 97.2 30 ...................................T GGTAAGACTGTTTACAGTCCCTCGATAAGT 3411 36 100.0 30 .................................... TCATCTCCTCCGATTGCATCTGTATCTAGT 3477 36 100.0 30 .................................... TGCCGACATTGCCGAGACCCCAACCAGCTT 3543 36 100.0 30 .................................... TTAGCTTATGCCAACATTGGTGGTAATGAT 3609 36 97.2 30 ..............................G..... TTCGCTTTCTGTTGAATAGTAATATGTGTT 3675 36 100.0 30 .................................... GCCATTGGTGTCTAATGACTGTGGTGCTGT 3741 36 100.0 30 .................................... CGTGTACATGATGTGGTCGTCCCCAATGAT 3807 36 100.0 31 .................................... CTAGATACAGGTAATCTGTGGGTATTGTGTG 3874 36 97.2 30 ................................A... TTCACCTACAATTAATGTATTACCCTTTAA 3940 36 100.0 30 .................................... TAATAACGGAGCGTTAAAGGCTTGGAGTTA 4006 36 100.0 30 .................................... CGGGGTCGCTTCCACATATCCTGTGGTCCA 4072 36 100.0 30 .................................... ACAATCGAACAATCAGGCGTCAAAATGGGT 4138 36 100.0 30 .................................... CCGTTGGTCCGACAACTTCCGCAGCTCTTT 4204 36 100.0 30 .................................... CCGGTCGTCGTCGGTTAAGTACCACTCATG 4270 36 100.0 30 .................................... GTGTGGCGTTGGCTAACGTTGTTGAGGGCA 4336 36 100.0 30 .................................... TAATGTAAAAAAGCTTGACTGTATACACAT 4402 36 91.7 0 .................................GAA | ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.6 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : AGCAGATTTAAATAAAATGTTTCAAGGACAATTACAAAAAAAGATCGTTTCGAAATTAGATGATGATACAAGATTGCAATTAACGGATCTTAATAATAAATTAAAATCACTTATTTTTGATGCTACGTTTTCGTTAGACCTTCCGTTAAAAGTAGATAGTGAATTTGATCCAGTTAAATTAGTTAAATACTGTAATGTTGGGTTTGTAAGTGCTTTAAATAGGGATCCTTATGATATAATTGAAACTGTATTAAAAACTGCTTCTGAATTAAAAGAAACAAAAATATTAATCTTAACTAATGTGCGCAATTATCTCAGTGTCAGCCAATTTAATGAATTGGTGAGTTTAATTAGCACGCTTGATTTGAACATTCTGTTTATCGAATTCTCAGATAACAGATAATCACGAAGAATTCGATAAATGCCGTTATTGCTACGTTGATCAGGATTTTGTTGATTGGCGTTATTAATGTCTATGAGAGTAGCATTATAAAAAAACG # Right flank : ATCAGGAGCGGCTTGACGCATTGAGGTAAAATAGTTTTAATTATTATCGTATATATAAAATAAATGAACCTCAATTGCACCAAAATCTGAACTTCATTAAAACAGAAAAGAACTACACAAGGAGCCAAGTATGCAAGTAACAGTAAAATCATTTTCAGAGTTATCCAATACAGAACTATTTAAAATCTACAAACTCCGTACCCAAGTCTTTGTTGTTGAACAATTATGTGCCTATCAAGAGGTAGACGATGAGGATCTCATCGCCCAGCATTTACAATTTACAAACGAGGCCCAACAGTTAGTGGCCTATTTACGAATCATCCCTGAAACGAACGAAACGATTGTTCATATTGGTCGGGTGGTTGTTAATCCACTCTTTCGCAAACAAGGGTATGGACGCAAACTCATTACGAGTGGACTTGAAACGATTAAAAAAGATATGCCAAAGGTCACAACGGTAAAGATTCAGGCCCAGGCTTATTTACGATCCTTTTATCAAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //