Array 1 92-573 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELP01000172.1 Thermus scotoductus strain 34_S34 NODE_255_length_2504_cov_14.1401_ID_509, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 92 36 100.0 40 .................................... GCTGCTCACCTTCTTGGCCATGTTACACTCCTTTCCACAC 168 36 100.0 40 .................................... CCGCAACATTGCTGCTGCTCCCCAATGGCTGTCGTGATTG 244 36 100.0 34 .................................... CTTAGCCTACGCCCCACCCTCCACCCGGCATATG 314 36 100.0 39 .................................... TCTATCGTGTTACCCTCTAGCTTCCGGCCAGATGGTTTT 389 36 100.0 41 .................................... CCCCAACCCTGTGACGGTAGGGCTGGGTTTCTACTAATCCA 466 36 100.0 36 .................................... GGTCGTAGGCGCGGGCTCGGTGGTGGGCTCGTCAAC 538 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 100.0 38 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : TTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACCG # Right flank : CCCAGGCCACCAGCCTGGGTATTTTGTTTTTATGAAGCGCCTCTATGCCATTGCCTACGACATCCCGGACGACAACCGCAGGGTCAAGATGGCTAACCTGTTGAAAAGCTACGGGGAGCGTGTGCAGCTTTCCGTGTTTGAGTGCTACCTGGACGAAGAGCTTCTCAACGACCTGCGCACCCGAGCCAGAAAGGTGCTGGACCTCTCTCAGGATGCCCTGCGCATCTATCCCGTGTCGGGCGAGGTCCAGATTTTGGGCGTGGGGCGGGTTTACGAGCTGGAGGCCTTTGGGCTGGCCTAGGCCGTGTGCAGATGTCGCCCGGCCCCGGTTCCTTCTGTGGCATCCTAAGAATCATGCAAGACCTGGCTACCCTTTGGGAGGAGTACAAACAGGCGGTACGGGCAGGAGGGGATGCCGTGGGTCTTTACCGGGAGCGCGTCTGGCCTGCCCTGCTGGAACGCTGGCGGCAGGAACCCCCCGTCCACCCTTCGCCTCAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 9003-7570 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELP01000166.1 Thermus scotoductus strain 34_S34 NODE_24_length_19830_cov_50.0928_ID_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9002 29 100.0 32 ............................. TCCACTGGCACCCCCATGCCTTCCGCTTGGGC 8941 29 100.0 32 ............................. CGCAGCCCGTGGTGCCCGTGTGGGTCTGGGTC 8880 29 100.0 32 ............................. GCCTGCCTGGAGATGAGGGTCAGGCGGCTCGC 8819 29 100.0 32 ............................. GGTTACCTTGAACGGACTGCTAAACGCTTTCG 8758 29 100.0 33 ............................. TAGAAATAGCCATCAGCGTCCACCCCCCACGCC 8696 29 100.0 32 ............................. CGTCAACCTTGCCGATGCGTTCTCCACCGGGC 8635 29 100.0 33 ............................. GGCGACCTCGCCGTGAACGCCACGAACTTCGCC 8573 29 100.0 32 ............................. CTACAGGGGACGCTAGGGTCTGGGGCGTGGGG 8512 29 100.0 32 ............................. GGCACCGTTCAGTTCCAGGACATGGACCAGCT 8451 29 100.0 33 ............................. AAGAGGGCGTTCCTCTCAGAGGACACGGGTGGC 8389 29 100.0 32 ............................. AGGGGCGGGGTTTGCTCATTCGGCATTTTCGC 8328 29 100.0 33 ............................. ACCTACACAGCACACACGCCAGCATAGCGCCCC 8266 29 100.0 32 ............................. GGAAGAGGTGCGTAAGATGGCCCCCGAAATAA 8205 29 96.6 33 ............................T GGCAGGCGCCTGAGCCGCCGCGGGAGATGGTCC 8143 29 100.0 32 ............................. CCTGGCGGCCTGCGACTGGACCCAACTCCCCG 8082 29 100.0 32 ............................. GAGCTCATGGCCCTCCTCAAGGCCGGGGCCCA 8021 29 100.0 31 ............................. AGCCTGCAGACGCTCAAAGCGCACCGTCAAC 7961 29 100.0 31 ............................. GCTTCCCAGGCGGGCCAGGGCCACTTCCAGC 7901 29 100.0 32 ............................. CAAGGTCACCCCGCTCGCTCCCAGGCGCTGGA 7840 29 100.0 31 ............................. ATACGTTTCGCGCACATACAAGGCCGCATCC 7780 29 96.6 31 ............................T ATCGGCGCCCGGGAGCTCCTCGCGGAGCCCC 7720 29 100.0 32 ............................. CCGATCCGCGCCTGCTCTAGGTCGGCGTAGGC 7659 29 100.0 32 ............................. CAAGGTCACCCCGCTCGCTCCCAGGCGCTGGA 7598 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTAGTCCCCACGCCCGTGGGGATGGACCG # Left flank : GGATCCTACCCGCCCGGGGGGCCTTTGGGACCTCGAGGGCGAGGTGGAAGGCGGAGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTTCCGAGGAGCCTTAGGGGGGACCTCACCCGCTTCTTCGTGGAGGTGGACACTGGCGTTTTCGTGGGCCAGGTGAGCGCTTTGGTCCGGGAGCTGCTTTGGGAGAAGGCTCTGGAGAAGGCGGGCGAGGGACGGGTGGCTATGGCCTACAGGGCGAACAACGAGCAGGGCTTCGCCCTCAGGCTTCACGGCTACACGGACCGGTTTTTGCGGGACTTTGATGGTATACTCTTAGTGAGCACTCGGAACGCCGAGGCAATGCGAAAAGCAGAGAAGTTGTCCAAGTTATTTGCGAGGTACGAGAAACGCCGTGCCAAAGCTTCCGAGGGGGATCTTGAAAAGGAAAATCCGTAGCCACTCCCAACTAGACACATAACGGGGGGTGAGCGGGCGTTTTTGCTGTCCTGGTCAAGT # Right flank : GGCAGGAGGTAGAACCAAATGGGTGACGACTCCCCGGACTAAAGTCCAGGGCTTCTCGGGCATGGTATTGCTACCCCCGAAGGCCCCGTCCAGGCCCTTGCCAGGATGTTTTGGGCAGCGGCCACATCCCGGTGGAGAAGCGCCCCACACTGGGGACAGGTGTACGCCCGCACCCAGAGAGGCTTCTTCTCCCTATGGCCGCACACCGGGCAGTCCTGGCTGGTGTACTTGGGGTCTACCTTGATGACTCGCCTACCAGCCAAAACGCTACCGCTTGCGCGGTGAGCCGCCGCTTTGTAGGCGAGGATTGCGAGAAACTGGGCCCAGCCCGCATCGTGTATGCCTTTGGCTATATGGGAGCGGGAAAGGGCTTGAACGTTCAGGTCTTCGTGGACGATGGTTCCGTAGCGGTTCACCAGCTTTCTGGCCACCTTGTGGTGGAAGTCTTTGCGCTGGTTGGCGATCTTGCGGTGGAGCTTGGCTACCTTGAGCCTGGCCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18760-19094 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELP01000166.1 Thermus scotoductus strain 34_S34 NODE_24_length_19830_cov_50.0928_ID_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18760 29 100.0 32 ............................. ATGCTGGACGAGCTCACCGCCGCTATAGGGGA 18821 29 100.0 32 ............................. AGCCACAGGCTCAGCCCGCACCGCCTTACCCC 18882 29 100.0 33 ............................. TAAAGCGTCCAGGTGGGCGGTTGCGCCCATCGC 18944 29 100.0 32 ............................. CCACCGGGCCCGGCGTAGGGCCCACCGCTTGC 19005 29 100.0 32 ............................. ACCGGCGCTACGAGGCGCTGGAGGCCCTCCTC 19066 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GTAGTCCCCACACCCGTGGGGATGGACCG # Left flank : TTGGGGTAGGGAGCGGGCGAGCTTCTCCAAAGCGGTGCGGTACTGGCGGGTCGGGGCCTGGTGGTAGATGAGCCTTCCGGCAGCGAAAAGGGCCAGGGCCTCCACGGGATGGAGAGGTGGGGAACGATCCGGGATAGCGTACTCTCCTCGGCGGCGGCGCTCCACAGGGTAGCCGAGGTCTATCAGGGTCTTAAGGTCTCGCTCCACGGTACGTTCGCTCACGCCAAAGCGCCGGGCAAGCTCTCCTACCCGCATAGGCCGGAGCTTCAGCGCCTCGGCTAGCTGAAGCAGTCGGGCGCTTTTCGCTTCCTGTCCCATATCAGCAGTTTAAGGGAGTTTCCGGAATTGCTGCGTGAAGGTTAGCCGTGCTAGACTACAGGTGGTGCCCCCTTTTCCTCCCCTTCTTCCGGGGCTGCGGAGCTTGACGACATTACCTGTTCTGCCTCCCGAAAAGACACATAAAGGGAGGTAAGCGGGCGTTTTTGCTGTCCTGATCAAGT # Right flank : GGAAGTGAGCCCGGAAAGGGCAACTGGGGACGGGGTCAGGGAGCCTTTTAGAGCGGGATATGGCCCATGGGTCAGGGGTCACGGGGAAGCATACCTTGCAGCCCCCGTTCTTCAGAACGGGGAGTTGTCACGGCTAAAGCGGGAAAGGGGGTCCGGTTCCCCCACGAAGGCGTGGGCGGTCATGGGGGAATGAGGACGGCTTGTTCGGGAGCCAGGTGGGTTTCGCCAGCAAAACCCCCTTGCCCTTGAGGACCAAGGCCACCTCCAGCCTTTCCCGGTGGTAGGGCAGGGACTGCTCCTTAACGGTACAGATGAGGACCGAGGTGCCCAAAGGGGTCTCCCCCACCCCCTGGGCGGCGAAGGGCCGGCCCGGGGGCACGGAGAAGTTGGCGAACTCCCCGGGGTAGCGGCGGAAGATCCCCTCCCCCGTGGCCGGAACCAGGGCCCAGGCCCGGCCGGCCAAGGCGGAAACCAGAACCCCACCTGCAACCTGCAAGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1501-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELP01000268.1 Thermus scotoductus strain 34_S34 NODE_341_length_1525_cov_2.70744_ID_681, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1500 37 89.2 34 ..G..T...............G.............C. CTCCAGTGGCCCTTAGGCCCATCCTATTCCACTT 1429 37 100.0 34 ..................................... CTCCAGGGGCCCTTAGGCCCATCCTATTCCACTT 1358 37 100.0 37 ..................................... GCCTCCCTCCAGGAGGGGCGGCCAAGGCCCCCCAGGA 1284 37 100.0 39 ..................................... CCTGACCCGGACTTGCCCACGATGAGGATGCGGAAGGTC 1208 37 100.0 37 ..................................... CTCCACGGGGTGGGGGAGCGGGGGCACCTCTACTTCT 1134 37 100.0 35 ..................................... TAGGACTGCTGGGGGTGCTCCTGATGGTGCGCCGC 1062 37 100.0 36 ..................................... CAGACTGGCCTACCCCCGTCCAGACCGGCTTTTTTG 989 37 100.0 36 ..................................... GGCCTCGAGGTTCGGACGCCTCTACATAGACGACTT 916 37 100.0 37 ..................................... CCCAGACGAAGAGGGGCTTCCTGGCGAAACTCCTCGG 842 37 100.0 37 ..................................... TCCAGCTCAGCCAGGCGCAAGAGGCGGCCCTTGTCCA 768 37 100.0 38 ..................................... CTGCCCGCCCTGGCCCTCAGCGCCGCCGCGGTCATCGC 693 37 100.0 35 ..................................... TGGTCCACGCTGTGCATTGTGGAGAAGGACTGGTT 621 37 100.0 35 ..................................... TTACAGGATGGGAGTTTCCCCCAACTGGTGCCCTT 549 37 100.0 37 ..................................... ACATTCAGGGTGTCCAGGAGGAGGTGGGAGAGGTAGC 475 37 100.0 35 ..................................... CGCACGATGTCCTCGGCGCTCACGTAGCGCACCAG 403 37 100.0 35 ..................................... GCCAAGAGCAAGACGGAGCCCCTCAGGGTGGTCCA 331 37 100.0 37 ..................................... CCGAGGACTTCCCCGCCCGCAACCTCCTCCTCGCCCA 257 37 100.0 37 ..................................... GATGAGGCTTTGGGCTATGCCCGGGCGAGCGGCTCTG 183 37 100.0 34 ..................................... TTGCGCGGGAGCGGGTGGAGCGCCCCGGTAGCGG 112 37 100.0 37 ..................................... ACGAGGTCCTTGGCCCGCCGCACCCCGTGCTGGACAG 38 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 21 37 99.5 36 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : TTCGGAAGGGAGGGGGGAGGCCCG # Right flank : CC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.10,-18.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : NA // Array 1 4544-3050 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELP01000266.1 Thermus scotoductus strain 34_S34 NODE_33_length_17005_cov_50.9537_ID_65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4543 29 100.0 32 ............................. TGATTTCTACCGTAGCCCTTACCTGGGGGTCC 4482 29 100.0 32 ............................. CCGGCCTCGGGAAAATGTTCCTCCCCCACAAT 4421 29 100.0 31 ............................. GTGGGGGTGGTGGCATGAGGCTGGATCGGGT 4361 29 100.0 32 ............................. GATCTTTTCCAGGCGGCGGGGTTTGTACTCCC 4300 29 100.0 32 ............................. CTGACGGGGAGGACGGAAGCCGAGGTCCTGGT 4239 29 100.0 31 ............................. GCCTTCCTCCGGGGCGCCCAGGACTGGGCCA 4179 29 100.0 32 ............................. CTCCTCTCCCTACCACCATTCAGCTCACGGAA 4118 29 100.0 32 ............................. ACCTCACCCCCCTCCAGCTCCGCCTGGTGGAG 4057 29 100.0 33 ............................. CCATCCCCGTACCTCCGGAAGTTGACCTCAACA 3995 29 100.0 32 ............................. GCCCCGGCCGGCTGGCCGCCGATGCTGGTCTG 3934 29 100.0 32 ............................. GGCAAGCACGTGTCCCGGGCGGGCAGCGCCCC 3873 29 100.0 32 ............................. CAGCAAGGGGATCCGGGCTTCAGCGGATTGCA 3812 29 100.0 33 ............................. GACGGCGTATGCTGGCCGTCCTTGAACACCATC 3750 29 100.0 32 ............................. GGTTCACGTGGCAACGGCGTGGGGATGGCACA 3689 29 100.0 32 ............................. TCGGGCTCCCGGGCAAGCGCCTAGTCTACTCC 3628 29 100.0 32 ............................. GACCTCGTGCGGCGGGCCGGGGATGACCTCCG 3567 29 100.0 32 ............................. CCCTTCCCACCGGTGAAAGCGGAAGACCCTCT 3506 29 100.0 32 ............................. GCCTCGTCCTCCTGGCGGGCCTCGGCCTCGGT 3445 29 100.0 32 ............................. TAGACCACGTAGCGGTTCCACCGCTCCTTGGG 3384 29 100.0 32 ............................. GCCTCCACCACCAGCCGATCCACCGGCTCCCG 3323 29 100.0 32 ............................. CATTTGCGCCCCGAAAACGTCATCGGGGAGCT 3262 29 100.0 32 ............................. TTGTTCGCGCAAGTTTTGAAAAGCGTGCTCAA 3201 29 100.0 32 ............................. GGTACAATGGCTGGGCGTATGTTGAACGTTTT 3140 29 96.6 33 ............................A GTGTCGTTCAAATACACCGGGTACAGCCCGGAC 3078 29 93.1 0 ..............C............T. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : TCTCATACTGGCGGGTCGGGGCCTGATGATATAAGAGCCTCCCGGCAGCGAAAAGGGCTAGGGCCTCCACCGGATGCAAGGTGGGAGGTCGGTCCGGAATGCGGTAAAGGCCGCGGCCAAGCTGCTCTATCCTGTAACCGGCATGGGACAGGGCCTCGAGGTCCCGCTCCACGGTGCGCACGCTCACACCGTAAAGCTGGGCCAGTTCGGAAACCCGGTGCGGGCGAAGGCTAAGGCGCTCCACCAGGGACAAAAACCGTTCCGCCTTGGACTTCGGGTCCATAGTTGGAAGCATTATAGCCTAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGT # Right flank : AGAATGTACAAGGTTGCCCCGTAGGATAAGCCCCCCAAAGCTTCGGCCAGGAGGGCCTCCAGCCTTCGCTGGAGGTCCATTTCCAGGGGCCGGAGGGCTAGCTGTAACGCGCCCGTAGGCGTGAGGAGGGAGAAGTGGAGAGTCGCCCGCCTGGGCGTGGGGCTTTCCCTGGAGAAGATCTACGAGAGTGTGGAGCTAGGGACTTCTTTCCAGGCCGACTTGGGGGCCAGGTAGTACCATGGAAATGCCATGGGGCCCGAGGAAGTCAAGGCCAGGATAGGGCCTTACCGGGAAGAGTTGAGGGAGCGTTTTGGGGTGGAGGCCCTCTACCTCTTTGGCTCCTCGGCTCGAGGGGAAGCGGGTGAGGGAAGCGACGTGGACCTTTTGGTGCGCTTTTCCCGTCCCCCGGGCTTTCTGGGCTACATGGGCCTGAAGCTCTTTCTCGAGGACCTTCTAGGCAGACCCGTGGACCTGGTCATGGAGCACACCCTGCGGCCGGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14691-15452 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELP01000266.1 Thermus scotoductus strain 34_S34 NODE_33_length_17005_cov_50.9537_ID_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14691 29 100.0 32 ............................. AGCTAGCTCGGGCTAAACGGGAGTGGGATAGC 14752 29 100.0 32 ............................. GCCAGTTCACCACCCCCAGGGGGGATGTAGGG 14813 29 100.0 32 ............................. TCATCAGCATGGAGGAATACCTGACCTGGGTC 14874 29 100.0 32 ............................. TCGTTGTAGAGGGTGAGGTCGTCAAACTCCAG 14935 29 100.0 32 ............................. GTGCACCATCAGGTGCCTTGGCGGGAATGATA 14996 29 100.0 33 ............................. TTATAGCGTCCATGAGCGCTGGTGAGTTCAGAC 15058 29 100.0 32 ............................. GGTCCAGCCCATACTAACCTCCTATGGCCGCC 15119 29 100.0 32 ............................. GGTCCAGCCCATACTAACCTCCTATGGCCGCC 15180 29 100.0 32 ............................. GTGCGCAATGGCTTGTGGGTGGTCCGGCTTCC 15241 29 100.0 32 ............................. CGTACATAAGGGGGAGAAGAGGACCAGCCCAT 15302 29 100.0 32 ............................. GGCACCGTTCAGTTCCAGGACATGGACCAGCT 15363 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 15424 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.7 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTGCGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GGTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGGAGCCCTCCCCACCGGGTTTGGGGCCACTCTCCGCTTAGGGATGCGAGCTCAAGCCTAATACCCTCCCCGGGCTAAAGCACTGGGTGTGGTGCGCGAAAGCTACGTTTCGCGAAAAAGAGACCCTACTGCCCCGCCCTGCAGTTTCTTGGAAATTCATCGGTACTAGAAAGGGCGGAGAAGCCTTTCGGGCACCTACCCCTTCCCCAAGGACTGCGGCCCTCCCTTCAAAAGGAAGGGGTTCCTGCCGGTTATCCGGCAAGAAACCCAGGCGACCCGGGGCCGCTTACCGCCGCCTTCACTTCCGTCCTTCCCCAAGGGCCCATGCCGGTTCTTGAGGAGGACGCCCAGGCTGTAGACCCGCTTTCCCACCTTGACCACGAAGGCTTCCAGCCTGTCGCCCCGCCGCACCACGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3-852 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELP01000351.1 Thermus scotoductus strain 34_S34 NODE_416_length_869_cov_2.53639_ID_831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3 37 100.0 33 ..................................... ACCGCTCCTGCCCTGGGCCAGAATGGCGTGGTA 73 37 100.0 37 ..................................... CTTGCCACCGGCTTGATGATGACCTCGTATCCGGCGA 147 37 100.0 38 ..................................... CGGGAGCTTGTGGAATAGCTACTCCCTGGGGGATTTAC 222 37 100.0 37 ..................................... TCAGGGGGTAGCTTGGTCCTACTCAAGCTCCGGGCCT 296 37 100.0 36 ..................................... TCCTGTAGCACGAGGAGGTCCCCATCTTTGCGATAC 369 37 100.0 36 ..................................... AGCTCCAGCCACACGGCGGAGAGCAGGCCGTGAAGC 442 37 100.0 38 ..................................... CGCGGCGTAAAAGCCCGTGGTCTGCCTAGCGCTGGAGG 517 37 100.0 37 ..................................... CTAGGGCCTCGGAGAGGCGCAGGCCCGTGCCGTAGAG 591 37 100.0 39 ..................................... GCCCTCCTGGTTCCCTGTGGTGTCTGTGCCCGCCAAAAA 667 37 100.0 37 ..................................... AGGAGAATGGTATGGGCAAGCTGAAGGAGGACACCCT 741 36 89.2 38 ...............C...........C..-C..... CAGCAATACCGCTCTCCCAAAGGAACAGCACAGCCCGG C [775] 816 36 78.4 0 .A...........C...C.A...AA.....-.A.... | A [837] ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 97.3 37 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : AGG # Right flank : CACAAAAGGCCCATCAC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.20,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA // Array 1 726-161 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELP01000046.1 Thermus scotoductus strain 34_S34 NODE_141_length_5934_cov_59.7682_ID_281, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 725 36 100.0 39 .................................... CTCAATGTTGTGCTTTTTGAGGAAGTCGTTGACTTTTAC 650 36 100.0 38 .................................... TACGCCCCAACTAATCCCTGGGGCGGGGCTCCCGTCTA 576 36 100.0 40 .................................... TGTATCCCTTCCAGTCAAACACCACGCTCTCTTTAGATAG 500 36 100.0 40 .................................... AGGTTGAGCGACCGCAACAGCTCGAGCACCTTGACTTGGT 424 36 100.0 41 .................................... GCCCATTCCTCGCCGCTGGAATCGGCGCTCACCTTAGCCTT 347 36 100.0 38 .................................... CCATGACTCACCTCTCCTATGCCGTTTCTTGCAGAAAG 273 36 100.0 41 .................................... ATGGCCATGTATTCAGTGTTCACATGGCCGAACCGCTTCCA 196 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 100.0 40 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : AAGGACGGGTACCCTCTAGGCTGGGCTGTAGGCAGGCTGGTTACCCTCGCCTAGCTACAACCCGCCTAGCCCCTTCTGGGCCCGAGGCCTAATAGGGAGGGTAGTTTTTACCCATCGACAAGGCTTGCAAATGTGACGTGTTCACTTTTACTAGGTGACTTGACACGCCGCAAAGGAATGGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGCTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTTCTTATCGACCGCTTCTACAGTGGCTTCGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCATACGCGGGCTGTGGCCCGGTGACACCGTATACCTTCGTGTGCTACCTCATAGCTCCACCCCGGCCATCCTGAGAAGCACCCGGCTACGTATGAGGTTGTGAACAAGCAGGATGAGGTTCACCCGGGCCACCAGCCCCCAGTAGGACCGGGCCTCTATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 5751-5053 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELP01000549.1 Thermus scotoductus strain 34_S34 NODE_60_length_12138_cov_37.3828_ID_119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5750 29 100.0 32 ............................. AATGCCGTCCTGGAGGCCGCCGCCGCCGCCCG 5689 29 100.0 32 ............................. AGGAGCGTTCAGCCCCCCGAGTGGAACGCCAT 5628 29 100.0 32 ............................. CCCATAGCCCGGTAGAGGTCCAGCACCACGGT 5567 29 100.0 31 ............................. CATGGCTCCAGGGTGGGGAAGGTTTGGGTTC 5507 29 100.0 31 ............................. CACGTTGGCAACATTAGGGTCGTTAACTGCC 5447 29 100.0 32 ............................. CGCATGGAGCCTCTGGTGGCGAAGGCGGTGGG 5386 29 100.0 32 ............................. ACGAACGACTCATCGCAACCAGTCCACCAAAC 5325 29 100.0 32 ............................. TACCCAACCCTCCCCCCTCGGGAGCGCGGGGA 5264 29 100.0 32 ............................. GCGCCCAGCCCGCTGTACCTCAGCCACCTCCG 5203 29 100.0 32 ............................. GGTTCGCGCTTCATCTGACACCTCATCGTAGT 5142 29 100.0 32 ............................. TTCTTGAGGACGTGCTTCCGGGTGAGCGCCAC 5081 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCCTAAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGATGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCTAGGTGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : AGGAAGGTCCCCTTGGTCGTCTCCACGCGACCGAAGGGGAAGATGCGAAACTCTCGTGGGGGCTCGCCCCCGGGGACGGGGATGGTCAGGGCATGCCGTGTCATGGTCCACGAAAACCCCCCGGGGCTTCCCGGGGGTAGAGTTATCCGAGCTTAGCTCTAGGATAGCACACCTTGCACTCCGCTACAAGGGGTGCTAGAATCAGGGCAAACCCACCGGGCTGGGCCTGGGTTCCCGATAGCCCGGTGCAGGACGGGCGCCCCTCCAGGGGGGCGTTCCCCGTTTTATTTGGCCACCCACCGGAGAAACCCCACCCGCTGGTTTTGGAGATAGGCGTAGTTTTTGGTCTCTATGAAGGTCAGGGCCGCCAGGACCCCCCGGTGCACCTCGTAGTCCCCACGCACGTGGGGATGGCCCGCCTATCCATACATCCTCAGCGTAGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2808-762 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELP01000556.1 Thermus scotoductus strain 34_S34 NODE_67_length_11222_cov_8.33105_ID_133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2807 37 100.0 38 ..................................... AATGGATGTAGGCATTCGATTAGCTCGCATCGAAGAAG 2732 37 100.0 34 ..................................... TTCGGGCAGGACAGGCCAGTGAATGCCGTTACCC 2661 37 100.0 39 ..................................... CCATCTGCGTGGCGGCGGTAGGGGATTTTTCAGCAAGTG 2585 37 100.0 37 ..................................... CTGGACCCCCTGGTAGCGGGCCTTGTCAACAACGGGA 2511 37 100.0 37 ..................................... CAGCCAGCCCCCAACATCTACCATGTTCCCTCCTAAA 2437 37 100.0 39 ..................................... TGAGGCTGGACCACACGATAAATGCCCTCAGGGACTCCA 2361 37 100.0 38 ..................................... TCCGCCTCAATGCGCCTTTGCTCGGCCTCTGCCTCGGC 2286 37 100.0 38 ..................................... GATACGAGCCAACCGAATGCCTACATCCATTGAATCCC 2211 37 100.0 38 ..................................... TGGGAATAGCGGTACTGATACGGCTACTGGGGGGGTAA 2136 37 100.0 38 ..................................... CAGGAGAACACGCAAGCGACCCCCCTGGAGCTTCCCAG 2061 37 100.0 39 ..................................... CTCGGCCTCACTGAGGATGATTTGCGGGATTTTATACGG 1985 37 100.0 39 ..................................... CGTGTCGTGGCGGGGGAGCGGCGCCTGCGTATCTACCTG 1909 37 100.0 37 ..................................... CTCTGCGGTAAACCTGGGTCTTCAGCGGCATAGGCGC 1835 37 100.0 37 ..................................... ACTTTGATGAGGACGCCGCTAGGCAAGATGGATATGA 1761 37 100.0 40 ..................................... CGCTACTACCACTAACGCCCTGAGGTATCAAGCCCGCCAT 1684 37 100.0 41 ..................................... ATCAAGTGGCTTGAGGAAAACAAGGGCCAGACGGCTAAGAG 1606 37 100.0 39 ..................................... GTTTGCCTCTGCCGGGAGTTTGGGGTGTACCCCTTGACG 1530 37 100.0 36 ..................................... AGCCGTGAAGGGGGGAAGTGCCAGGGGGGTAGTTTG 1457 37 100.0 39 ..................................... GCCGAGGTGGCCACCCTGGTCCTCGCCGTCCACCCGGAG 1381 37 100.0 37 ..................................... GGCCTCGAGGCCCGCCAGGGGGTCGGGGAGGCGGGAG 1307 37 100.0 36 ..................................... CCCAGAAGCCGCAGGGTGGTGCCCAGGGCCCTCAGG 1234 37 100.0 36 ..................................... CGCTACCTAGCCGAGGTGGAGGCCCTGCCCATCCTC 1161 37 100.0 38 ..................................... ACCCCCACCTGCACCCCTTGGGGGCATCCGCTGGGCCT 1086 37 100.0 38 ..................................... GAGCGGGGCTTCCGGGCCGTGGCCTCGGACGGCTACCG 1011 37 100.0 34 ..................................... GGCCAGGGCGTAGTCAGGTATGTAAAAGGTGGCC 940 37 100.0 32 ..................................... TTTGGCGGATGAGCTCGTCCACCCATCCTCCA 871 37 100.0 36 ..................................... GGGTTTGGTGCGGCTGTCCTGGCCGCCTTCTCGGAT 798 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 28 37 100.0 37 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : GAGGTGAGCGTGCATCGGCTGGACGTTCTCGTAGCTTATGATGTAGATACCCAATCAGAGGACGGCCAAAGGCGATTGCGCAGGGTGGCTCAAGTCTGTAAAAACTACGGTCAAAGGGTCCAGCTCTCCCTCTTTGAGTGCAGGGTCACCTTGGCTCAACTGGAGGACCTCGAGGCCAAACTCCTCAAGATCATGGACCTGGAAAAAGATAGCCTTCGCATCTATGTTCTTTATGGTGGCCGGGAAAAGTCCTTGAGAGCCCATGGCAAGGACAGATACACGGACTTTGACGAGCCCCTCATCCTATGATGAGGGCGATGCGCGAACCCCAAGTGCGCGCAGAAACCCCGGGGGGTTCGCGCAAAGCGGCGAAGGCCGTGGTGGAGCTTGAAAACCGGTTTGGGCACTCTGTGCCAAGCCCCTGGGCGAGGGTCCCGAGAGGGGGGTCGCCGCGAAGGACCTCCTTCCTGCCCATCAGGAGGGCTACGATATAGGGGGGA # Right flank : AAACTTGCCATCCTGGTCATGCGTAGTCCCCACGCGTGTGGGGATGGGCCGGCGCTAAGAGACTGTCGTAAAAGTCCGCTATACTTGAAGGGTGGCTTCTACACGGAGATCTTACCCCAGCGACCTGTCGGACGCGGAGTGGGCCATCCTGGAGCCGTTGATCCCCGCCCCCAAGCCCGGTGGCCGACCCGCAAAGGTGCCGAGGAGGGAGATCGGCTTTGGGGCCCCTACCCCAAATGAACCGCAGCGCCATACTTTACGTCCTGGAAAACGCCACCAAGATACGGGCTTCGCCCGTGACCAAGTGGCGGGCCATGCCTCACGACTTGCCCCACTGGTCCACGGTCTACCACTACTTCCGCAAGTGGCAGAAGGAAGGGGTTTGGGAGAAGGTAGCTCAGGTTCTGGCCCGTCGTGACCGGGAGCGGGGAGGACGGTATGCCTCCCCGAGTGCCCTGGTTATGGACAGCCAGTCGGTGAAGACGAGTGAAAAGGGGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.10,-18.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 2 10868-11127 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELP01000556.1 Thermus scotoductus strain 34_S34 NODE_67_length_11222_cov_8.33105_ID_133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 10868 37 100.0 36 ..................................... TCCATAGGGGATGCAGAGGAGTATGCCCGGACGATA 10941 37 100.0 37 ..................................... TCTGGTGGTGCTGGGCTTCCTCCTCTTGTTGATGTGG 11015 37 100.0 39 ..................................... CCCCCTGCCCCCCCCCGCCACCGCCGACCCTCTCAATTC 11091 37 83.8 0 ...TA............A....C...G.....T.... | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 96.0 38 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : GCCCGAAGGCTTCCCAACCCTCATGCTGCCCTGAGCCCAGGGCTACGTAAGCCAAGGCCGCACCCCAGACGGCATGGGGCACGCTGTTTGTCCTTTTTCCCTCCGCCGCGACCTTGAGGTAGGCCTGGAAATCCCGAGTGGCCTTCCCAAGGTCGTGAAGGAGGGCCAGGGCCTGCCCCAGACTTGGGGTGCCAAAGTGCTGGGCAAAGCCCCCGGCTAGGCGGGAAACGGCCTCGAGGTGGTCTTTGAGGGCGTGCCAGGCTCCCTGGGGGTTAGGGGTGTGGGCTTTGGGGTCCATACATCCTATGATGAGGGCAATGCGCGAACCCCAAGTGCGCGCAGAAACCCCGGGGGGTTCGCGCAAAGCGGCGAAGGCCGTGGTGGAGCTTGAAAACCGGTTTGGGCACTCTGTGTCAAGCCCCTGGGCGAGGGTCCCGAGAGGGGGGTCGCCGCGAAGGACCTCCTTCCTGCCCATCAGGAGGGCTACGATATAGGGGGGA # Right flank : CAGTTAGTGCCCCCGCCGTTATGCTTGCCCGTGCTGTTGTGTCCCCGGCCCGCACGGTCCGCTACGCATGTAACCAGTCCGCCGTAACCCCGAGT # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.20,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //