Array 1 180503-180168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFH01000009.1 Streptomyces olivaceus strain NRRL B-3009 contig9.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180502 29 96.6 32 ............................G ACCGACACCGAGCCCGGCAGCGGCGACGGCAT 180441 29 100.0 32 ............................. GGAGCGTCGACGTGGACGAGCGTAGAGACCCC 180380 29 100.0 32 ............................. GTGAGGCCGCCCATGACGAGGCCGATGATGGC 180319 29 100.0 32 ............................. ACCCCACAGTCCCCGTACTGCTCGGTGGTCGT 180258 29 100.0 32 ............................. GGGTCCGTGACCATCGCGGAGAACGGCGTCAG 180197 29 89.7 0 .............T..........AC... | C [180175] ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACACATGTTCACCCGACGACCGCGACCGGGCCGAGTGGCAGCCCGGCAACCCCGCCTGGGGCCACTGCGACATCACGGCGTTGATCGTCAACGACATCTTCGGCGGCGATCGCGTGGTCGGCGAGGTGTACCTCAACGGTGCTCAGCGCAACTTCCACTGGTGGAACCGGCTGCCCAATGGCATCGAGCTCGACCTGACGCGCGAACAGTTCCGCCTCGGACAAACCGTCACGGCCGCCCGTGTCGTCGAACGCCCGCCCGGCCCGCTGCCCCGTCGCTATGAGGAGTACCTCCTGCTCCGCGAGCGCATGGCCGAACACCTCGGCCCGCTTCCGGAGCCTGCGTGAGGGAGAGCCATGCGGCAGTCGGAATCCGCCGGAGCTGTGGTCGACCAACTCTGCGTACGTTCGGACCGATACCGCGGGGTGCCCTATTTGCCGGAATCTTCGAAAGTCACTGAAAACACGCCTCTGCGGCCATAAACTCGCAGGTCAAACAGT # Right flank : TGCGGAGATCGGCTTCAGGGTCGCTGGGTCAGTTCACCGGAGCTTCTCGCGCGTCTGCGCGCCGCCGGTTGGCGGCGCGCAGACGGGTGGGGTGTGCTCGGTGCGGGGGCGGTCAGGCCCAGCAGCCGTTGACGGTGGCGGCGAGGCCGTCCATGGCGTCCTTGATGTCCGTCGGGTCGGCCGTCGAGTTGTTCTCGATGAAGGAGAAGATCCGCCAGTCGCCGTCCTCGGTCTTCGTGACACCGCTGAGGGCGATGGCACCGGTGAGGGTGCCGGTCTTGGCCTGGACCTTGCCGACGGCGCACTCGGAGTTGGGGTCGTCGAAGCGGCCCCACTCCGGGCCGAGGCTCGCCCCGGCCTCGCCGGCGACCGGCAGGCCCTCCAGGATCGAGCTGAGGGCGGGGGACTCGGTGATCGAGTCGAGGAGCTGCGCGAGGGTGGCGGCCGGGATGCGGTCGTCGCGGGAGAGGCCGCTGCCGTCGTGCATCTCGAAGTTGTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1206-568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFH01000093.1 Streptomyces olivaceus strain NRRL B-3009 contig93.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1205 28 100.0 33 ............................ ACAGGTCGCGGGCATGGAGGTGGGCGTCGAGGG 1144 28 100.0 33 ............................ GTCCTCGTCCGGCAGGTGCACGCGCTCGGCGTC 1083 28 100.0 33 ............................ CGCGAACCCACGGCACGGCGGCAACACTCGAAG 1022 28 100.0 33 ............................ CACGGTCAGGCCCTGCTCGGTCCGCGTCTCACG 961 28 100.0 33 ............................ GGTCATCGAGCGCACCCCCTTCGCTCTTGGCCG 900 28 100.0 33 ............................ CCCTTGTGCGCCCCCGTGAGTCTGACCAAAAGG 839 28 96.4 33 ..........T................. GTACGAGGAGGCGCTGGCGACCTCCGGCGCCGG 778 28 100.0 33 ............................ CTTGCCGCGGTCGTAGCCGGTGCGGTCCTCGTC 717 28 96.4 33 ...................A........ GCCATCGGCGTGGAGGAGGCCGGCCGTCGGCTG 656 28 100.0 33 ............................ AGGACCCAGCCGTCCGCCTCGCTGATCGCCGCC 595 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.3 33 GTCGTCCCCGCACCCGCGGGGGTAGTTC # Left flank : GGGGACGACGACCGGAAGCCCTCATCCAACCTCGTCATGAGCGAACTACCCCCGCAGGCGCGGGGACGACGTGCCGGACGCGACGCCGGCCGCAACGCCCGCCGAACTACCCCCGCAGGCGCGGGGACGACGACCGGCCCGGCCAGTACCGGGCCACGTCCCAGAACTACCCCCGCAGGCCCGGGGACGACACGGACGATGGCCCGACGGTAGGTGAGGCTGGTGAACTACCCCCGCAGGCACGGGGACGACTGGACGCTCAGCCTCGCCAGCGACGCCCGCGGCGAACTACCCCCGCAGGCGCGGGGACGACCCGGCGGCGTGGCCGTGAACGTCGTTGACCTGCGAACTACCCCCGCAGGCGCGGGGACGACGGTTGGTCTTCTTGGGCATGTGAGTCCTCTCGGGAACTACCCCCGCAGGCGCGGGGACGACTCCGCTGTGGCACGGAGCGCGGTCATCATCGTGGAACTACCCCCGCAGGCGCGGGGACGACTGAT # Right flank : GACCGTGGCTTTATTCACGAGTAGTGACGCCGGTTGTTCCTAGATTTGGGAGGCACCTAGATCTACGGAGGGGTGTTGTTCACGAGTTTCGACAGCACCGGGGGACTTGCCAGAGCGGCATCGAGGTGCTCCTGGTGAAAGGCCTTGTCATGCCGCAGACGTCGAAGGTCGAGCTGTACGCGATCCGGCGTGACCATCGTGCCGGCACACCAGTCTGTCTGTCCGACCGGATGATCGAACCCTTCGGCGTGCAGCTTGTTGAGAGCCGAGTTGTCGACGTCGCCCCGCCACTCATACGTGATTGTCGTGATTCAAACCTAGCTATCGGGTCAGCGTCTCGAAGCCGGCATCGTCGCAGTACTGCACAACGCGCCTCTCCGCCTCGGAGTCACTGTTGTTCATCGCTGCCACCGTCGCCTCCGCCAAGGTGCGGCCTCCGCCAACGGCCTCATCCCGGAGCGGTCGCACCGCGAGGAAGGCGTCCTGCGCGACGGCCCCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1210-1847 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFH01000093.1 Streptomyces olivaceus strain NRRL B-3009 contig93.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1210 29 96.6 32 ............................C ACGATGATGACCGCGCTCCGTGCCACAGCGGA 1271 29 96.6 32 ............................C CGAGAGGACTCACATGCCCAAGAAGACCAACC 1332 29 100.0 32 ............................. CAGGTCAACGACGTTCACGGCCACGCCGCCGG 1393 29 100.0 32 ............................. CCGCGGGCGTCGCTGGCGAGGCTGAGCGTCCA 1454 29 93.1 32 ..........T.................A CCAGCCTCACCTACCGTCGGGCCATCGTCCGT 1515 29 93.1 31 ..........G.................T GGGACGTGGCCCGGTACTGGCCGGGCCGGTC 1575 29 100.0 32 ............................. GCGGGCGTTGCGGCCGGCGTCGCGTCCGGCAC 1636 29 100.0 32 ............................. CTCATGACGAGGTTGGATGAGGGCTTCCGGTC 1697 29 89.7 32 .......................T.C..C CGCCAGGACGTGTCGCCGCTGTAGGCGGTGCA 1758 29 86.2 32 .............T.A..T......C... GAGCTGCGCGGCCGGTGCCCCGTACGCCGCGC 1819 29 72.4 0 ....C..A.............ACG.CC.C | ========== ====== ====== ====== ============================= ================================ ================== 11 29 93.4 32 GTCGTCCCCGCGCCTGCGGGGGTAGTTCG # Left flank : GGGACGACGACGAGGACCGCACCGGCTACGACCGCGGCAAGGAACTACCCCCGCGGGTGCGGGGACGACCCGGCGCCGGAGGTCGCCAGCGCCTCCTCGTACGAACTACCCCCGCGGGTACGGGGACGACCCTTTTGGTCAGACTCACGGGGGCGCACAAGGGGAACTACCCCCGCGGGTGCGGGGACGACCGGCCAAGAGCGAAGGGGGTGCGCTCGATGACCGAACTACCCCCGCGGGTGCGGGGACGACCGTGAGACGCGGACCGAGCAGGGCCTGACCGTGGAACTACCCCCGCGGGTGCGGGGACGACCTTCGAGTGTTGCCGCCGTGCCGTGGGTTCGCGGAACTACCCCCGCGGGTGCGGGGACGACGACGCCGAGCGCGTGCACCTGCCGGACGAGGACGAACTACCCCCGCGGGTGCGGGGACGACCCCTCGACGCCCACCTCCATGCCCGCGACCTGTGAACTACCCCCGCGGGTGCGGGGACGACATCA # Right flank : CTTGCAGAGCTTTGTGTGGACGGTGGAAGCGAGGCGGTCGTCTTCTCCAGGCGGATCGGAAACCGCGGAGCGCCGCCGTGGCCGTCATGATGACGATATAGGGGTCGGTTCGGTGGGAAGCCAACGTCAAGGCGGCGAGGCGGGCACAGCGCGAGCGCCAGCGGTGTCCACGAGACTGGCCATGTGCTCGCCGATCGCCGCCGTCCGCGTCACCTCATCAATCGCACTGGACTAGCGTCCACCGTCATGTCGTCCCCAAGCGCTCAGCTGCGTCTGACGGGCCCACGGGCCACGTCGGCGGGCTTGTCGAAGCCTCAGCCTTGGGCGTTGCCCCTGCGAGGCGGCAGTTTCCGGTCGTGAGGGGCTCTCTTCTCATCGAACCTCTGTGCCTTGTAGGTTCGCGTGTGCGCAATGAGTTGTAGCTGATGCGCACGGGCTGACGGGGGATGAGCGATGGTGGGGCACCGGCCGACGGATTGGCATGTCCTGGACCTGGACAA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTAGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //