Array 1 2-826 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKYB01000009.1 Staphylococcus felis strain F22 k127_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2 36 100.0 30 .................................... GACATTCAATCTCTTTTCATACGAAGAGTT 68 36 100.0 30 .................................... ATTAATCCAATTACCTAAAGGGTTAATCGT 134 36 100.0 30 .................................... TAACCAGTCACGTTCTTTTCGCCTTTTTGT 200 36 100.0 30 .................................... ATAAGGCCACGAAACCATTGCACCAACTTT 266 36 100.0 30 .................................... AGATGCAAGCGAAGCATACACCTTTATTCG 332 36 100.0 30 .................................... CCATCATTTTTATAATAATACTTTTTACGT 398 36 97.2 30 ............C....................... ATATTAAAGACATATTGCAGAAAGTGAAAG 464 36 97.2 29 .........................A.......... AATGGTACTAAAAAGAAAGGGAACGTATT 529 36 94.4 29 ............C............A.......... TTTGGTTTTTTAACAGAACTGAGCAAGAA 594 36 97.2 29 .........................A.......... TGAAGAAATCGAACAATTAAAATCTGAAA 659 36 97.2 30 .........................A.......... TGATCCAGGGAAAGGTAACTTATACACGGC 725 36 94.4 30 ..............G..........A.......... ATGATGTACGTACCATGTACATTGTCCCCA 791 36 86.1 0 ........G................T....C.T.C. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 97.2 30 GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Left flank : AG # Right flank : CATTTTTTTCTGAATTTTTAGATATAATGATGATACTGGAATGACCAACTGATAATCAATAATCGAGAAATCTTAATGATACATGTCTTTTCTTTTCATTGATATAATGAAATGATATAGTCAAATATTTTTTAGAGAAGATTGTTTTATTTTATTAAGAAAGGGGAAGTTCGATGAAGTCTATTATTGCAAAACACGCTTTTAAATTGTCAGATGGGAATTTATTTGAAAAAGTGACACGTGAAAAACCAATAGTGAATGCTCATGAAGTAGGAATAGCTGTTCATGCATCAGGTGTGAATCCGATTGATACAAAGACGCGTCAAACACCACTTCAGACTGAAGCACGTGTATTAGGATATGAAGGGACAGGTGTTGTTGAAGCAGTAGGTGAAGATGTGACGCGTTTTAAAGTAGGGGATCGTGTGATGTTTGTCGGTGCACCTAAATGGGAAGGGTCGAATCAAACTTATCAAGTATTAGATGAAGCGTACATGACG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Alternate repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 75735-77016 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKYB01000113.1 Staphylococcus felis strain F22 k127_357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 75735 36 86.1 29 ..........CGC......A.....A.......... ATAAGCATGTGACTAAGAAAAGAGGAATA 75800 36 97.2 29 A................................... GTATGTACGATATTGTTTCAGTGGACAAC 75865 36 94.4 30 ..............G..........A.......... TTTTGGTACTGTGTTTAGTCAACAAATTAA 75931 36 94.4 30 ........G................A.......... TTGTAGACTGCACTGTAGGTACGTCAGCAC 75997 36 100.0 29 .................................... TTTTGAAGATTTACCAGTAAGGACTTTAA 76062 36 100.0 29 .................................... GTACCACTAAAGCTTTCGTCTTTCATGTT 76127 36 94.4 30 ........G................A.......... AATGCTAATGTTAAAGAAGCAGACCTTACT 76193 36 100.0 29 .................................... CCTGACTCTAGACGAATGATACTTAAAGC 76258 36 94.4 29 ...................A.....A.......... GGTGCAGTCATATCATCTCGTGAATTAAA 76323 36 94.4 30 ............C................A...... TGTCTAACGGAAAAATCAATGAGGATACAA 76389 36 97.2 30 .............................T...... GATAATACTCGTCACAACATTAGCGTTACA 76455 36 100.0 30 .................................... GGTTACATTGCCTAAATATATGGTTGTGTT 76521 36 97.2 30 ..............G..................... TTCAGTATTATCGTTACCACCATTAACACG 76587 36 94.4 30 ..............T..........A.......... CGAGAGATGATATGACTCCACCTGCTCTGC 76653 36 94.4 30 ........G......................G.... TCCATAATCTCCGAATTCTGACACAATACT 76719 36 86.1 30 ........GT...............AT........T TAGTAATCCTGGGCACGTTGCAATAGTGGT 76785 36 97.2 30 ..............G..................... AATGAAAGAGAAAGCATTTTCCCTGAAAGT 76851 36 97.2 29 ..............G..................... AGCAGGTCAACAGTTAGTCGTATAATCAA 76916 36 97.2 29 ........G........................... CTTCCGAAATTGAATGTTGGTACATGGTT 76981 36 94.4 0 ............C............A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 95.5 30 GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Left flank : AAGTGAAATTAACAAAAGGAAATTATTTATCAATTTACTTAAAGACGATGATAAAGAAAATGTATTACTTATATTGTACCCAGAAGCATTTTTGGGGCTCAAAGATATTCAAAGATTTATACAATTGATTAAAAGTTATCAACTCACAACCATCATAATTACAAATCATCCATCTATTATCATTGAGGAAGAAAATGTTTATTTATGCAAAAGCAATAAAGAGTGTCACTCAATCAAAGATATAAGGGAAGATCTAGAAATTCTTATGCCACAAGAAACAATTAATGACAAAACGGTTAGAATGATTGCTTATCATGAATTCATAGGTACAGATTTAAAAGAACTAGCACGATATTTTGAGTTTATTAATGATTATAATTAAGATATAATTGAATTTACTATGATAAATTAAAAACAACAAGCTTTATTCAATGTTTAACTTCTTAACTAAAAAGCTAAAACCTCAAAATGGTAAAAACTATAGTGTGTATTTTTGAATT # Right flank : | # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [12-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //