Array 1 739599-739066 **** Predicted by CRISPRDetect 2.4 *** >NC_013769.1 Sulfolobus islandicus L.D.8.5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 739598 24 100.0 40 ........................ ATCATCAACCCGCCACCATCTCCTATTATAAATCCTCCAC 739534 24 100.0 41 ........................ ATTTCCTTTCCATTCTCCATTTGTCTCAACTTTATCACAAA 739469 24 100.0 38 ........................ TGAGAAATGTCTAATCAATTCGTCCTTCCACGCACTAC 739407 24 100.0 39 ........................ TTTCTAACGTTTTCAGTAGGGTTTACTCTAATTTCGCTA 739344 24 100.0 40 ........................ AGAAATAATAATACAGTACAAGAGGAAGAATTAGAACCAG 739280 24 100.0 41 ........................ CCGCATATGTTGCGAACATGGCTGTGTCTTCAAACCCGTTC 739215 24 100.0 40 ........................ CCGCCTTCAGGGCGGCGATGGGTGTGGGACCGACTCCCCA 739151 24 100.0 38 ........................ CACCCCTTAAACTCCCCAGTTTACCGTCAGATTTCGAT 739089 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================= ================== 9 24 100.0 40 GATAATCTACTATAGAATTGAAAG # Left flank : GTTCATCGCATTAGCTAAGTCGAATAACCTTGAGTTAGTAACGTCTGATAAAAAGCAGTACGAAGTTGCGATAAAAGAAGGAGTTAATACGCGATTAATATAAGGACTAAAAAAGGCAGTCCTTTTCCACTTACTTAGCTTGTTTAAGTTGAAATTATCGAGCACTTTATTTATGTCAATTTACCTCTTGTAGGCGAAATTATTACTAAGTCTTTAAAATCCAGTAAAAATACGATTATTAAGAATAGACGAAAATCTTGTAAATGATTACATTTCTCTTAAAGAAAATATAGGGAAAGAGTTCCCCCGTATACAATCGTTGTTTTCCTTATTCGCTAATTCGTTTTGGGCTAGGTTGTTTTCCTAAATTCATTATCTTTATGAAGAATTCGTTAAAATCCCGGGAAAACCCGGGAATAGTAAAAAAGAGAACAAAAATAATAATAATACTAATGAAAGAAGGGAGAAGAAAAGATAAAATAGAGGGTTTAAAATCCTCA # Right flank : AAATTTATCAAGTCGAAGATTGCACTAGAGTCAAAAGGTATCATATCTTTCTTTCCTTCATTTCTTTAACTCTCCGACTACTTCATCAGTATTAATTTTTACTATCTCTTTAGATGCTAAATCCAATAATCTTCTTGCTTGCTCTTCTTCCTTCTTTCTAACTTCTTCTTCCAAATCCTTTCTTAAAACCTCACTTACATTAATCTTATATTCTTTTGCTTTTTCTAACATTTCTCTCCTAACCTTTGTCGAGGCAGCAGCAACCCGTTCGCCTATAATGACCTTCTTGAATTATAAGGTAATAAATATTCTGTAGTAGAATGTTTTCTACCTTATGCTTTCTAGGCTTAAAATTTAAATTCTTTAGGATGATAGATGTTAATTGTGGAATGCTTTCGAGGCTTAGACTAACCATAAAAGAAACCTCATAATCTTTGTACATAACGTTTGTTAAACTGTATTTAGCCTTTACATTTCTAGGTTTTTCTGCATGAGTATCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 792628-785798 **** Predicted by CRISPRDetect 2.4 *** >NC_013769.1 Sulfolobus islandicus L.D.8.5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 792627 24 100.0 40 ........................ CATCTAGATCATGTAAAGGATAGATATGTAAAACTGGTAT 792563 24 100.0 40 ........................ TTTCTTATAGTGATTTGTCTTACAGCAGGGTGTGGTTCAA 792499 24 100.0 40 ........................ TCAACTCCATTTTCTATCGGTTTCTTGATTATATTCGCAA 792435 24 100.0 40 ........................ GTTTTTTACTCTAATTTCCTCAACATACTCTTTTCCGACA 792371 24 100.0 44 ........................ ACGATAGGAATAGCAGAGATTGCTACAAATATGGCACCGTCGAC 792303 24 100.0 42 ........................ GTGATCATCTTTTTGACCTTTGCTAGCTGTGCCAATAATTCT 792237 24 100.0 42 ........................ TTACCGGTAGCCCGCTCCTCTCATCAACAATGAGTACGGCAT 792171 24 100.0 39 ........................ CAATTAAACCGTAACCGTTAGGCTTTGGTAAAGAGAAGT 792108 24 100.0 39 ........................ GAGGGGTAGCGGATTATGTAGAGAACCCCAAAACTAGGT 792045 24 100.0 43 ........................ TTTAACTCTTTATACACATCTGCCATATTGCCTGCAAATTTTA 791978 24 100.0 40 ........................ ATTGTTTTTACTAAACTTAAATATTCTTGAAATTCTTCAC 791914 24 100.0 39 ........................ ATGCGTGAAAAATAAAGAAGGGAAGGTAGAAGATCCTGA 791851 24 100.0 41 ........................ TTCAGTGTATAATAAATTCCTTTAACGTTCTTTACTTTGTC 791786 24 100.0 43 ........................ CCTTAGAGTATTTACGCTATTAATAAGATAGAGTAGAGCGTTA 791719 24 100.0 38 ........................ AGATATTATTTGCAAAGCAAAGATGATTTGATAGCTCT 791657 24 100.0 38 ........................ TAGATGCTTTACCTCTCCTAGTGAACCAGCGGGAGATC 791595 24 100.0 40 ........................ CAGAAAACAATAATATTGGCGGGGTGAAAAAATGAGCTAT 791531 24 100.0 42 ........................ TTTTTCCACCTTTATTACTCTAAGAATCTGACATATAAATTT 791465 24 100.0 41 ........................ ATTACAATTAATTATGATCTAAGAAATAATACAATTTATAT 791400 24 100.0 43 ........................ ATAATTGTAAATTCTGAATGGTCAGCAAATGCTTTTAAAAAAT 791333 24 100.0 42 ........................ TATTATTTTCAAATGCCCTTGTTCTTCCTTTAAGGGGAACTT 791267 24 100.0 40 ........................ CATGGTGGAATACATATTTATGTTATTGCCGATGAGATAC 791203 24 100.0 44 ........................ GACGAATTTTGTTGTTGAGGCTGAGGTAGGATAATTCCTATTCC 791135 24 100.0 43 ........................ AAATAAAATTCCAATACCATCGCCAAAAAGGTATCTTAACCGT 791068 24 100.0 46 ........................ ATAGGTGGGTTAACAAGTATCTTAGAAAACACGAACGTCATTCCTT 790998 24 100.0 45 ........................ AATTTACCAACAAATATTGAAGGAGTTGTTCTAAAGAGTCCTCAA 790929 24 100.0 40 ........................ TTAAACTTTCAGACTTCAAATATAAGGTAGAAAAGACCAA 790865 24 100.0 40 ........................ CTTTGTAATCCACAAATTTCCCACTTACCTTGTCATAATA 790801 24 100.0 45 ........................ AACAGAGACAGTCTCAGGTACTAAATCAAGTGAGACACCATTTAT 790732 24 100.0 45 ........................ TCAATGGAAATTCTAATGTCTTTCCTTTCACAAATATATCATATA 790663 24 100.0 44 ........................ TTATACACAAGTGTCGACATTACTGCAAGTTTTGAATATATCTA 790595 24 100.0 42 ........................ ATTGAAAACTCACTGAATCATGATCTGATGATGTTATTTGAA 790529 24 100.0 41 ........................ GCGCTCTGTTTTATACAGCAGCAACAAAAAAGATAACAAGG 790464 24 100.0 41 ........................ TTTCCTCTAGCATTTTCTTTAATTCATTTTCTTGTTCTTCT 790399 24 100.0 42 ........................ TAAACCCAGTTACAGGTACTGGTTAAGACTTATTGACGGAAA 790333 24 100.0 44 ........................ ACTTCAACTGTTTTCATCTTTTATCACTAATTTAATCTATGTAT 790265 24 100.0 43 ........................ TTGTATATTACTCTTGGGTGAAATGTCTCACGTTTAAAGTCTT 790198 24 100.0 41 ........................ TCCACGAATAAGGGATGGCTCCATTCGTCGTAACGGAACGA 790133 24 100.0 41 ........................ ACTTACGGTGAAATAGCCGATATTCCTAATAGCAATTATAG 790068 24 100.0 38 ........................ TGGTAAAAAAACACTCTATTTCTTTCTGTGACTTTGAA 790006 24 100.0 40 ........................ CCTAGAGAAGGATCATGCAAATGTTGTTTAAATAATGAGC 789942 24 100.0 40 ........................ ATCAGTTATTATTAACACAATTGGAACAAATTACAAAACT 789878 24 100.0 41 ........................ AGACGTTCATATATCACTTCTATTTTTTTTCTGCCAATATC 789813 24 100.0 37 ........................ TCAATTCCAGAATGCGATATGGTGGTAGTTGAACCTG 789752 24 100.0 36 ........................ TCAACACTACAAGGTTCATTAATTCATGAAAGCGTA 789692 24 100.0 44 ........................ AGAAGCCCAAACACAGAAGATAGAGCTACAAGAAGAAGCAAAGA 789624 24 100.0 43 ........................ ACATATTCTGCTAATTTTGAGATAGCTTTTTTGATAGTTTCTT 789557 24 100.0 40 ........................ ATTTTATTAGCATGGCAAAGAGGCAATAATTTCGCTACTT 789493 24 100.0 40 ........................ AATATATTTGATAACGCTTCAGCAGTAGCCTGATGTCCAA 789429 24 100.0 42 ........................ GTATATACTCTTCACAAAAGCGTTAGCACTTAGGTTTATCGT 789363 24 100.0 40 ........................ TATCTTCAAAAAATGGGTATTTATTATCTTTTAATGAAAT 789299 24 100.0 39 ........................ TTTGGGTTTTATCGCAAATTCTCTTTTCTGGAATGTCTT 789236 24 100.0 41 ........................ TTAAAATACGTTAGTTTCGTGCAGATTAATGAAAAAAATAC 789171 24 100.0 41 ........................ AATCGAATTTTTATAGTCAATTCCGCACAGATATGAATTAT 789106 24 100.0 42 ........................ GTTATCAAGTACTTAAATTCACAGTTACCATTGCAAAATACA 789040 24 100.0 40 ........................ ATGAATCCCAATATCGCATAATCTTTTTGCTTAAATTCTA 788976 24 100.0 40 ........................ TCTTATTATCCAGCTAATAAGAAAGTAAAGTATTATTATA 788912 24 100.0 42 ........................ AATTTAAATTCTATAATTAATAGCGGATTTGCTTTAGACGTA 788846 24 100.0 40 ........................ TCTCACACTGCTGAAATTATTGTATATTTTATTAACGTTT 788782 24 100.0 40 ........................ TCTTTAAATCCCTATCTTTTTGCATTTCACGAATTTCGCG 788718 24 100.0 41 ........................ GGTAATATTGCATACTATATCAACACCACCCAAGGTCAAGT 788653 24 100.0 43 ........................ ACACCATAATTTATTCTGTTAATGAAGTCATATGCAAGCTAAT 788586 24 100.0 37 ........................ CTACATACATCTATAGCATACACAACATTTATACCTT 788525 24 100.0 37 ........................ TTATTTTGCCATGCTAATAATATTGGAGTTTCTACAT 788464 24 100.0 40 ........................ ACGCCAGATATGATTATGGTCGGGAAATTAGTTTCAATCT 788400 24 100.0 39 ........................ ATTCCTAGAAACAAGGTACGGCGTACCATCACAAGCCTT 788337 24 100.0 44 ........................ TTAGTCTCAGAACAAGGACATCTTAAAGTTCTCTTAGTCCCGCG 788269 24 100.0 40 ........................ GTTTACAAGCCCGACCCCTTCGCCCCCCTTTTCATAATAG 788205 24 100.0 43 ........................ TCTTTACTATGAAAAACTAAGATATACTTATTGTCTTGCTTTT 788138 24 100.0 44 ........................ ATTCTTTGAGGATTACAACAGTCACATTTAGCTAAGACTATACT 788070 24 100.0 43 ........................ ATTCTTTCATATATCACCGCTACAGTTTTTTTATTAATTTCTA 788003 24 100.0 39 ........................ TTCTTTAACACTTTCTGGTAGGCTTTGAATGTAATTGTT 787940 24 100.0 43 ........................ TAACATCATTTGGAAGTTCTATGTATTCCATAGTTGACATTAA 787873 24 100.0 37 ........................ AGATCCATATAAATTTCATTTATTCCTTTTTCAAACT 787812 24 100.0 42 ........................ TTTTGCATATCTTTGACTGTATGATCTAGGTGTTCTTCCTTT 787746 24 100.0 39 ........................ GAGAGTTATTAGTTATTAATTTTTCAATTGTCAATTTCT 787683 24 100.0 38 ........................ GAAATTACTTCTGTTGTAACAGATCCTCTGAACCCTGA 787621 24 100.0 39 ........................ ATGAGGTTCTCCTTATAACCGTGTGCATTTAAGTATATC 787558 24 100.0 40 ........................ GCTCTTTCTGTAAGGGTAGGCAAATAGTACCCTCCACGAA 787494 24 100.0 41 ........................ TCTACCATTTTACGGTTCATAATTCCTCTTTGCTCAGCCCA 787429 24 100.0 40 ........................ ACGACCATCGCTCCCGATTTTAATTTTGGTACCACATTTC 787365 24 100.0 39 ........................ AATCGAAAGCATTAGGGCATGGATTACCGATGTAAATAT 787302 24 100.0 43 ........................ AAGCATATTTCTTGGTTGATGATGTTAGAATGACCATGTGTAT 787235 24 100.0 41 ........................ CTTATTGAACAGAAATGCGGTGAGGCTGTTTGAGCCTACAA 787170 24 100.0 40 ........................ CTAGGTTATGTCGGTACAAATGGACAAGTAGGAGGAGGTG 787106 24 100.0 42 ........................ TCATTCTTTATCACCAATTAGACTATGTGTAAAAACTAGTAT 787040 24 100.0 43 ........................ AAATTAGAGTAAAAGTACAAGGGGTGTAAGTTTGACTAAGAAG 786973 24 100.0 40 ........................ ATATAGTGTTATGTACGTATGCAGATAGGGATATTGTTGT 786909 24 100.0 43 ........................ CTTACTGTAGGGCTTGAAATTGGGATCGAATAACGCATCTGCT 786842 24 100.0 37 ........................ CATAAATATGAATTATTATATGGCGTTATAAATTTCA 786781 24 100.0 39 ........................ AATTCGATAAGGTTAGGACTAAGTGCTACTCCTATCAGA 786718 24 100.0 40 ........................ TTTTCAGGAATTGCATTTAATTGTACCACTAATCTCTTCA 786654 24 100.0 43 ........................ ATTATTACCGTAAGGTGTGGAAGCTTAAGGTTTACGACTTTAT 786587 24 100.0 42 ........................ CTTTCGGCTCCCAATCCTTAGGTATAATACCCCTCTCTTCAA 786521 24 100.0 39 ........................ ATTTGTATAAAAGGAGGGTCAGCAAAAGGCAAATCTCCT 786458 24 100.0 41 ........................ GTAATAGATATGAATAATCAGGCGGGAGGATTAGGTGCAGA 786393 24 100.0 38 ........................ ATTCTCACTGCTAGCGATAATGCTTTATCAATAACGGA 786331 24 100.0 41 ........................ GAAGAAGAAGTGCATAAGTCTGATGTTTCACTTTCTGCGGA 786266 24 100.0 39 ........................ ATAAATCTAGGAAATGCTGAAAGTGAGCTTAGAAAATTA 786203 24 100.0 37 ........................ AGATCCCCGCGATAGTCTTCACGGCTTCTTTAGTTTT 786142 24 100.0 37 ........................ TTAATAGGATTTTTTACAAGAAGAAAGCTTTCAAGAG 786081 24 100.0 42 ........................ ATGGGGGAAATATATGCATCGGCATTTTCAATCGAAATTCAG 786015 24 100.0 38 ........................ GCTCAGGAAAAGCTGTTGAGAGATGCCGGATATAACAT 785953 24 100.0 43 ........................ GGCACTTGTTTAGCACATGTAATTTCCTTGTATGTTGTTTCAA 785886 24 100.0 41 ........................ TCCAAATATGTCGAAAAATATCTACAATCCATGGGAATTAA 785821 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================== ================== 106 24 100.0 41 GTTAATCTACTATAGAATTGAAAG # Left flank : AGACATGGACAAGCCTAGATATCTTCTGGGTTTTATTGGAGGCATATGATAATTCCAACCCCTTAGCTCCTCCTCTATAGGGTCAGAAGCCCTATAGGAGTGAAGCCTCCTAACTTGTCTAATTATCTGCGACCTCACGTTATACATTATGCAAAAAGAATCTAAAATGCACGATAATGATCCTTGTAAATTTCTTCCCGACTTTAGTAAGGATAATCATAATAAATGACGATTTTTCTCTAAATAAAGAATAATAGAAAATATAGGGAAAAGATTCTCCCGTATACAGTAGTTGTTTTCCTTTTTCCTTGTTTCGTTTTGGGTTAGGTTGTTTTCCTAAATTCATTATCTTTATGAAGAATTCCTTAAAATCCCGGGAAAACCCGGGAATAGAAAAAAAGAAAGATAAAAGTAATATAATACTAATGGAAAGAGTAGAGAAGAAAAACTTATAAGAAAGGGAGAATAAAAGATAGAATAGAGGGTTATAAAAACCCTCA # Right flank : TTAGTGTATATTACCCTTGCAATTGCTTCGTCTTCACATATTTGTTAATCTACTATAATAACGCCCTTCAACCTCTCCCTAAGTATATTGTCGGCATCTATTGGTCTCTTCTTGTCGATCTTGTAGGATTTTATGTAGGGAATTTTCAGTCTTTTTCTCGCTATTCTCCAAGCTGTTACGTGAGAATGTCCGGAATGTAATTATCTGAATGAATATATAAATGGAATGATAAATATTAATATTATCAGAAGTATAAAACCTGGTTAATCTGGAAAAACTTGATCATGGAAAAATATCAAGTTAAGAAGATTTATTTATCATGCATGGTGATGCTTGAGTGCGTGATGACGTTTCTTAGAGTTGAACTATTCGACGTCCTGGAGGGGTTCTTCGTTGGACGGCTAGGAACATCCTGATGTTGTAGAAGACTCCCAGGACGTGGAGGAAGGCTTCGTTCCTCCACACCGTGGTCCCATAGGGCCTCCAGAACTTGTACAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 3 796686-804197 **** Predicted by CRISPRDetect 2.4 *** >NC_013769.1 Sulfolobus islandicus L.D.8.5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 796686 24 100.0 46 ........................ CTAAAGTATTCGGGACACCAAGTGGCATCGCATTTATATTCCAAAA 796756 24 100.0 41 ........................ AGACGCTCGTAGATGACTTCTATACTTTTTTTCCCAAAATA 796821 24 100.0 18 ........................ CAGCATTTCCTAAGTTTA Deletion [796863] 796863 24 100.0 39 ........................ CACTTTAACATATTTCTTTTCAACCACGAGGTGGGTGTT 796926 24 100.0 39 ........................ AACGCACTTAATGGTTATTATCCCTTCCAGAACGGCTTC 796989 24 100.0 46 ........................ TGAAAGATTTTGAGGGAGAAGTGAAAAAAATTAATAAAAAGTTTAC 797059 24 100.0 40 ........................ AATCTTGACAATTCCGTATACGGTGGCGTTTTCTTGACGA 797123 24 100.0 38 ........................ TATGCCAAAGGTGTTAAGATTCCTAGGGTCGAAAGGAC 797185 24 100.0 39 ........................ GTGATAGACATCGAGGGGTTACTCGGGCTCTCTCACGAA 797248 24 100.0 40 ........................ GTACTGGTTGATTATTGGATCTTAGTACGGCGTCTCTAAT 797312 24 100.0 38 ........................ TAACCCCAACGATTGTTAAGAAGATTAATAAGCCGTAA 797374 24 100.0 42 ........................ CAGCATTTCCTAAGTTTATGGGTACTTTGCCTACTTTATAAA 797440 24 100.0 41 ........................ GTATGTGTCCCTTAACGTGTATAGCCTGTCCTCACACTCTT 797505 24 100.0 42 ........................ GCATTCGCCCCTCTCATCATCACTGCTAATGAGATGAGAATA 797571 24 100.0 36 ........................ CCCATCTCACCCACCGATAAAAATTTATTGAACAAT 797631 24 100.0 43 ........................ AGTACCTCGGTACCGTAATAGCCTGCTAACGCTGAAACATCTG 797698 24 100.0 43 ........................ GATTATACTGAGTTTTATCTTAATACAATTACTACCGATATAT 797765 24 100.0 40 ........................ CTTATAAATGAGTTAATTCAACCTGTTGAAAACAAAGGAA 797829 24 100.0 40 ........................ GAACAAGAAAACATTATCATGGTACCGCTTGACTACGTAG 797893 24 100.0 36 ........................ CGCCACCCAGTGCTACTGCTTCTGGGACAACTGGAG 797953 24 100.0 40 ........................ AGAACTTCCTCCTCGCCTCCCCGTGGAGGGAATCCAGACT 798017 24 100.0 43 ........................ TTTGAAAAACATAAAATAGACTTGAATACTGCACAGTCATATT 798084 24 100.0 40 ........................ TGAATTTTTTCGCCGTATTGCTGAGCAAATTGTAAATCAG 798148 24 100.0 42 ........................ CCGTGATGATGCCGTTTATTTCTTCATTCGTGAAAGTCCTTC 798214 24 100.0 39 ........................ ATTTCATGATGTTCGCAGGAATAGCTAATGCCACTTAAA 798277 24 100.0 42 ........................ CAAGAAGTAAAGTCGGGACAGGTTCCCGAAACCGCGAGTCCA 798343 24 100.0 40 ........................ AAATGTATCTCTCTACTTATACGGGGTTCTTTTTTAACTT 798407 24 100.0 39 ........................ ACAATGTTTTACTACATAAAGAACCTGAGGATACCAGAT 798470 24 100.0 42 ........................ GCTAATGCAGAAACATCAGCTATATCGTTAAAGAACTGTTGG 798536 24 100.0 38 ........................ TGCTGATGTGCATATTAAAGGTTTTTGAGGTTTACAGT 798598 24 100.0 39 ........................ TGATTTGACTTGAAACCACCCATCTCTTCTCATTGCCGA 798661 24 100.0 37 ........................ AACGTTACGACGAGGGGTGGTCGTTGTGATGGAGGAA 798722 24 100.0 38 ........................ GTTGAAACTTTTTTCTGGAGAGGTGTCTGGATAGGCTA 798784 24 100.0 38 ........................ TTCTCCAGCTCATAGTATTTTTCTTCTACGACTTTTGC 798846 24 100.0 42 ........................ ATCAACATAACAAACATGAACGCGATCGGTATCGCGATTACG 798912 24 100.0 42 ........................ TTCTGTGGTCGCCAGTACCCTGTCCTCGTTCATCATTTCTAA 798978 24 100.0 38 ........................ GGCTCAGTTTGCGTTAGTGCTGTTATTATTGCTTGTAG 799040 24 100.0 39 ........................ TCACTTAAGATACAGCAAAGACGTTGACGACAAATTCGT 799103 24 100.0 40 ........................ TTGTGAAGTTCGAAACAACCAGAGAATGTAAGTCCTGATC 799167 24 100.0 44 ........................ TACCGGTAGCCCGCTCCTCTCATCTACGATGAGTACGGCATTAT 799235 24 100.0 43 ........................ CGGAAGATGGCATTTTTGTAACCTTGTTGTCGTAAGACACTGC 799302 24 100.0 39 ........................ CCCTACCACCTCAACTCACCCCGTTTCGTGTTTCGGTAA 799365 24 100.0 40 ........................ ATCATTAGCCCTCCACCATCTCCTATTATCAGTCCACCTC 799429 24 100.0 43 ........................ CAACAATGTCAATGTCAACTACTTCTACAAACGTTTGCACCCC 799496 24 100.0 36 ........................ CTTTTAGTCCTAGTTTTATTGCAATCATGTCAACAA 799556 24 100.0 42 ........................ TTGTCAAAATTTCATTAACGGAGTCCTATGTAAATTGCACGA 799622 24 100.0 44 ........................ CGAAAACTTTCGGCAGATTTTGATAAAACTTTTCTGTTATACCT 799690 24 95.8 40 .....................G.. ATTAGATTGGCAAAAAACGTATAAAGAGTATGAAATGCAT 799754 24 100.0 43 ........................ CATAGCAAATTTTCGTTATTCTGCGTTTGGCTTAAACTGCTTA 799821 24 100.0 39 ........................ ATATCCATAAGCACAATCAGTGCATTACAAAGTATAATT 799884 24 100.0 41 ........................ ATCTTGACCGTTTTCATTTTTCTTTCACAATACTATCTATG 799949 24 100.0 41 ........................ TTTTCTAGTTCTTCACAATTATACATAGGAATTATAGGTAG 800014 24 100.0 40 ........................ ACAGTCACTTAGGTATTTCTTTACCGTTCTTTCTGAAATG 800078 24 100.0 39 ........................ ATGCTGACATTAGAACAACCCGCAAAGATACCAGTACTA 800141 24 100.0 40 ........................ TGATGTGGACATAGCGGTATACGAAGAATAATTTGTCTAG 800205 24 100.0 39 ........................ GCACAAGCAGGTGCCTAAACGTGAAAAGGTATGACCGTA 800268 24 100.0 41 ........................ TATGAAAAATCTCTTTCAACATTTTCAATCCCATTACTTCT 800333 24 100.0 41 ........................ AAATTTAAATGAAAAACCGGGGGTTTAAAAATTTTACTGTT 800398 24 100.0 39 ........................ AATATGTAATTTATATCATCTCAGAGACAAATCAAATAC 800461 24 100.0 41 ........................ CTTTCAAATTCTTCACAATTATACATAGGAATAATAGGCGA 800526 24 100.0 40 ........................ ATCGTTATCCCCTCCTTCTCCAAGTATTTTGCCAATTTAG 800590 24 100.0 41 ........................ GCAAACATAGCACAGGGAATATACAACGGTATACTTGACAT 800655 24 100.0 44 ........................ AAATATTTTACTAGATATCCGTACCCTGCCGTTCTTGTTCTTCC 800723 24 100.0 38 ........................ TATTCTACAGCATATATCGACTTTAGCATTAACTTGAA 800785 24 100.0 37 ........................ ACATTATGCTATAAAATGATTAGTGAACAAAGAGCTA 800846 24 100.0 40 ........................ AACCCTCTCCCGACGGGACTGCCGGTTTCCCGTTACTCGA 800910 24 100.0 39 ........................ TTGAGAAAACATCATAGATGCCATTGATAGCTGAGCTGG 800973 24 100.0 44 ........................ ACTTGTGCAAATCCAAATTCGTCTTGATTCATGCAAAAATTATT 801041 24 100.0 44 ........................ TCTTCATTAACTCTCACTAACTTGACCTTGATATAAACATTTCT 801109 24 100.0 41 ........................ CTAACATATATAATTCTTCCTCGCACTCTAGCCCCAATCCA 801174 24 100.0 41 ........................ TCAATTACTAAAACATATTCCTGAATTTGTGGAAATTACAT 801239 24 100.0 39 ........................ TACAAATTCGCCGAAAGAAAATACAGAAAATTTAGATAA 801302 24 100.0 40 ........................ CTCGTTCTTCTGATTTCTTAACCACCATGATTGTTCTCAT 801366 24 100.0 38 ........................ CATAATACGTTATTTCACGTTCATTCTTGTCTGTTTTG 801428 24 100.0 43 ........................ TGACAACATGATTATATATTTGTAGTGAATCGATGTACTCAAA 801495 24 100.0 39 ........................ ATTATTTTCTTTGCCCCTTTAAGCAAAAAATATAATGCA 801558 24 100.0 41 ........................ CAAGATAATCATGTTCTGTTTTTAGAAATTTCATCAGTCTT 801623 24 100.0 38 ........................ ATAATGCTACAGACAATACCAAGTGATAGACTAGAAAA 801685 24 100.0 36 ........................ CGTGGTTCTTAGACCCCAGTGAATGGGAAAATGTAG 801745 24 100.0 40 ........................ GTTCAGTTATTTTCTCATATGGCAGTTCGACAGTCAACCG 801809 24 100.0 39 ........................ TCACTACACTATTTTTGTCATTTATCGTAACGTTTCTGA 801872 24 100.0 41 ........................ AGAAATAGCGGAACAGTTCAAGAAGAAGAATTAGAATTTGA 801937 24 100.0 43 ........................ TCAAACATATATTTCGTTCTCGTTAATAATGGTGTTACTGTAG 802004 24 100.0 39 ........................ CATAATCCCCAGGTCTTAGAAATACTTCATTTGGCTTTT 802067 24 100.0 38 ........................ ATGCAGCCGTTATTTTATTCAATGAACAATTTTTTCAA 802129 24 100.0 38 ........................ ATATGGGTAGGGTTTGAATTTCTCGTCATAAAGGGCGT 802191 24 100.0 41 ........................ TCTTCTCTCAATGGAGTAGCAGAAAGCCCTAGTCGTATCGA 802256 24 100.0 38 ........................ TTCTTGATATTGACAGCAAATGAGTGAAATGCACCGGC 802318 24 100.0 41 ........................ TTATAGACTACCTTGAGGATCATAAGTCACTTTTCACGCAA 802383 24 100.0 40 ........................ ATTGTGACTGTACTGTAGACGCAGTTAAAGGTATCAGTGT 802447 24 100.0 40 ........................ TCAATACCAGAATGTTCAACTATAATTACAGAGCCTACAC 802511 24 100.0 40 ........................ GTTGTAGAAATTTGTTGTAATGTGTTACCCTCATTATTGA 802575 24 100.0 39 ........................ AAGAATTGTCTGAAAATAACTGCATCTTCTCCTGAAGAA 802638 24 100.0 40 ........................ GGTTGTAATACGAATTGTATGCTTGTTTCAGCGACTAAGA 802702 24 100.0 39 ........................ CATCATATTCTCTGCTCCACGAAAAATGTCTAATTAATT 802765 24 100.0 41 ........................ ATTTCAAACCTGACTATAATTATTAATTTATAACTACTAAT 802830 24 100.0 39 ........................ ATTGTAATTGGTGTAATAAATGGAGTAAGAAATTGTGTA 802893 24 100.0 39 ........................ CGCTCTTCATATTTCTTTTTCGATAAATTCATTTTTATT 802956 24 100.0 40 ........................ AATCTTGACAATTCCGTATACGGTGGCGTTTTCTTGACGA 803020 24 100.0 40 ........................ TTTTCATTAAACATTTCTGATAATTTCTTTGCTACACTAA 803084 24 100.0 39 ........................ TTTTCGGGTCGTAAATTTTTAAGTAAGCAAGTACCACGT 803147 24 100.0 38 ........................ AATTTTAAAGCTGTTGTGTTACAAGATTACGATTATGA 803209 24 100.0 40 ........................ AAACTTATCAAACATTCGTTTGCTTTACTCATTCTTACAC 803273 24 100.0 47 ........................ TAACGCTAAGTAGACTGCAGTGTCTCCAACGTATGCACCTATGTCTT 803344 24 100.0 41 ........................ TTAGTTTTTATCGAGGGTCACACTTTAACGAAAATATCTCT 803409 24 100.0 39 ........................ TTTTATTTCGTAATTGTTTTTTTAAATCAATCCTGCAAA 803472 24 100.0 42 ........................ TTAACTTCAACTGTTTTCATTTTTCTTTCACAATACTATCTA 803538 24 100.0 40 ........................ TTGGAAGAGGCGACCCCGAGTCACTTTGTACTATTGACGA 803602 24 100.0 39 ........................ TAATTTTTTTCTTTCCCTTTTCGTCTTCCATCCTTTTAT 803665 24 100.0 40 ........................ GTCTTATCTACTTCAATCACCCAAAGGTCTTTATTTAATT 803729 24 100.0 40 ........................ AATAATGTTAAAAATAAATTATGGAGGATGGAATCCTAGT 803793 24 100.0 37 ........................ TATTATTTTTAAATGCCCTTGCTCTTCTTTCAGCGGG 803854 24 100.0 40 ........................ TTAAAATTCATTAGCTTTATCCAAATCAATGAGAAGCATA 803918 24 100.0 42 ........................ TATCGCCGTAAAGCTGGGGTTAAAGGAGGAGAAGAAGAAAGG 803984 24 100.0 39 ........................ CTTCGCTTGCAGTATCATCGAAACTTGCGACATAAAACT 804047 24 100.0 39 ........................ GTTTTTGCATAGTTAATATTGGTGATAAAAAAATGGAGA 804110 24 100.0 40 ........................ TACAAAACTCAAAGCCTATGTACTCGCCATCGTTAAATAG 804174 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =============================================== ================== 118 24 100.0 40 GTTAATCTACTATAGAATTGAAAG # Left flank : CTAATTTTAATTTCAATTATTTCCGGGCTAGGATAGCGAAGTCGTAGAGTTTGGATTTTTAAGTTTTCTATAGCAGCTCTAGTTCCTTCCACTATGGGACTAGGAACTACTATAAGTAATTTATCCTCCTTTTGAGCTGAAGTCTCATTAAGAAGTCTTAGAAGATAAGTTTCATTAAATCCCAAAGTTACAAAGTAAGACTTCATCATTATATATGGTAATATCATAAATAAATAACTTTTGATTACTTTCGAAGAACTCCAATTCCAATTTTTATTCCCTACTATTTCCGTTGTTTTCCTTTTTCCTTGTTTCGTTTTGGGTTAGGTTGTTTTCCTAAATTCATTATCTTTATGAAGAATTCCTTAAAATCCCGGGAAAACCCGGGAATAGAAAAAAAGAAAGATAAAAGTAATATAATACTAATGGAAAGAGTAGAGAAGAAAAACTTATAAGAAAGGGAGAATAAAAGATAGAATAGAGGGTTATAAAAACCCTCA # Right flank : GAGGGCTCATCTTAAATGGGTAAACACGGAAACATCGTTTGGTGTTATTCAACTCTTTTGAGGGAAGAATCTAGTTGAGCCTATAGCATTTCAAATTACTTGTCATTTAACTTCATCATTATCATTATAATATACAACTTTATTCTAGTGACAATGATACGAAATTTCACCGTATTTAGAGTTAAGATAGTTTTCAACAGATTTTACAAATTGCTTTATAAATCTATTACTAGAGTTAGAGTCTTAAACTCAAATTTTGCCTTATCTATAGAAGATTAATAGAACACATGGGAAAGCGAAAATGGTCTTAAGGAGGCAATCTACGCCTCGCCTTTAACAGACATGAGTTTGGAACTGTAGGAGGCTGAAGGTAAATTTTCTGAGCAATCTGAAGTTTGTACATTATCTAAGGGTAGAATGCCTGCCTTGTTCTACAATATTATCTATATGATCTGAAGTTCTGTATGCTTGTTCAAATTTTCCTATACTAGCTTCACGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 4 857511-854966 **** Predicted by CRISPRDetect 2.4 *** >NC_013769.1 Sulfolobus islandicus L.D.8.5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 857510 24 100.0 34 ........................ ATTTCAGGAAAGGGGCGGATATTTTTCACGAAAT 857452 24 100.0 35 ........................ TTTGAGACTACCAGAGTGGTGTAAGGCTGAGAACA 857393 24 100.0 36 ........................ ATAGTTTTCATTTTTTTATCCCCTCATTTTTTCAAT 857333 24 100.0 36 ........................ TTTTCGCCTCTAAATAAAAAGAACTTTGAATATTTC 857273 24 100.0 35 ........................ TGAAAATTACACAATATGACAGATTATTTGTAAAT 857214 24 100.0 34 ........................ ATTTTATTGTTTTCCTTTGCATTTTTACTTAATT 857156 24 100.0 36 ........................ TATTACGATAAAAATCACGGACAAAAATGGAAAATT 857096 24 100.0 35 ........................ CTTACACTCACTCCCAAAATTCTCGAAATTTCACT 857037 24 100.0 37 ........................ TGTTGTAATATTGCTTTATTTATAATCACTTTTGAAT 856976 24 100.0 36 ........................ AATTATCATTTTCATTTTCTGACATATTTATATTTC 856916 24 100.0 36 ........................ GATTTTTGGAATAAGTAGTTCAAAAAGTTACATCAT 856856 24 100.0 34 ........................ TTTGAAACAAATGCCTCTAAGCCATTTAATTCAA 856798 24 100.0 35 ........................ CTTTTTTTCATCTTTACATCATTTTGAATCTCAAT 856739 24 100.0 39 ........................ TTTTTCTTTCTCACTCATTTCTCTTTCACTAATATATAT 856676 24 100.0 36 ........................ TAAATTTGAATAATCTGCCATCTAGAACAATTCCCC 856616 24 100.0 36 ........................ TTTCTGCATCATTTGATCCTCATTTAATTGCAAATA 856556 24 100.0 35 ........................ AATGTTTTTGCAAAAATTAAGTGCAAAAATCTCAT 856497 24 100.0 39 ........................ ATTACTTCAGGCATTCGGATATGATCCAACTAGGATGGA 856434 24 100.0 35 ........................ GTTATATTTATTTGCTCATCCAAAGCCGAGTAGAC 856375 24 100.0 36 ........................ TTATCTACAACTACATAATCAAAATCTAATTCTTCT 856315 24 100.0 36 ........................ TTCGTTTTTTGAACAATATAGATCAAAAGTTTCACA 856255 24 100.0 36 ........................ TTCGTTTTTTGAACAATATAGATCAAAAGTTTCACA 856195 24 100.0 38 ........................ TTGTCAGCAGTCAAAATTGCAATTAAATTATCTAGAGT 856133 24 100.0 31 ........................ TATGAAATTCCTGCATTATCATTTTATCAAT 856078 24 100.0 37 ........................ AGATTAGCAATAGATAAAATCAGAGAACTAGAACAAA 856017 24 100.0 35 ........................ TGAGTCATCATAAAAATATATCTTAATTTTATTTT 855958 24 100.0 35 ........................ ATGTGGGGCTGCGGATGGTCAGCAGAAGAAGCATT 855899 24 100.0 34 ........................ AAAATAGAGTTTAAGCAAAAAGATTATTCAATAT 855841 24 100.0 38 ........................ TCGTCATTTTGCCACTCATATAAAGGACTTCCCGATAA 855779 24 100.0 42 ........................ TTCATAGCCCATTTGGGGTGGCGTGGGAAGACCCAAAGTAAT 855713 24 100.0 40 ........................ TTCATAGCAGAATCCACGTTTTTTATCCCAAATCTAAAAA 855649 24 100.0 38 ........................ ATACAGGTTCTGGAGGCTTAGGAACTGGAGGCTTTGGA 855587 24 100.0 35 ........................ CTAGTACCGCCGTTAGTGATCGTACCTATCAGCTG 855528 24 100.0 34 ........................ TGAAGAAGAGAAGAGGTTTAACAGAATCGTCAGA 855470 24 100.0 35 ........................ TAAACCAATAGATGAGGCGAAAAAATGTTATGGAT 855411 24 100.0 36 ........................ AATTTTCCACTTTTGCCCGTGATTTTTGTCATAATA 855351 24 100.0 37 ........................ ATTGTTGAGCTGACTCTTTTAACTTCAATTTGTGCTT 855290 24 100.0 36 ........................ AACTACTACGACTATCAAAAAGATGATAATTCATTT 855230 24 100.0 34 ........................ AGCATGTAATACATCACGAGTAGAGGAATTTCAA 855172 24 100.0 38 ........................ TACGAAGTCTTTGACTAAGGCAAATTTTACCAGAGTAT 855110 24 100.0 36 ........................ TTTATGAACTTTTGAATAATCTAGCTTTTTATTCGT 855050 24 100.0 36 ........................ TTAATAGCATCATATGTAGTTGGAGAAGTAGTACAT 854990 24 91.7 0 ....................T..T | C [854968] ========== ====== ====== ====== ======================== ========================================== ================== 43 24 99.8 36 GTAATAACGAAAAGAAACTAAAAC # Left flank : TAGTCCACACTACTTACGCAATAAAACCTGCTTTACTCACTAGCGTTAAACTGCTTATTTTATAGTACAGTTAATTTATCTTTTGATACATCTATTCCTGCAACTGGGGGCCTCCAAATTTACCCTTATTCGGGCTTCAAGCTCAACTTCCGGTTAGAGGAGGTTAAGCTCCTCATCGAGCTTTAAGCCCAAAACGGCCTACACCCCAGTCAGATCTGACTAATATGTTTTATATAAGAGACGAAGCATAGGAGGACCTCTCTCCCATGATATATAATACCATTTTTGAGATTATTAGCTTTACTATGTAAAATTTTTCGATTTTTTATATTATTTGGTATTATGTTTTTGCCTTCCTTTTCCTTACCTTAAACTCTTTAGGTTTACCCTAAAATTCTCTTAAACTCCCTTCCGGACTTAAAGTAATTTAAAGATAGTTGAAGGCTGGTCAAATTTATAAGCTTGGAATGAGAATGCAAAATTAAGGAGAAAAACGACCT # Right flank : TTCAAATATTATGTAATGAAAGGTATTAGGTCTTGCTTTTTATCTCTACGAATCCGAATCCCGCAGCTCTACCTGTTCCTACTCCCATTACGTTTGCGTGGTTCAATATTTCTATTATTTTGTCCACGGTTACTTTGCTTAATCTCTTTCTTAAGAAGAACTTAGCGTAACCTATTACTCCAGGTAGCCATTCCTTATCGTAATAATACCAGACCTTAGTTATCGTATTGAGGTTATTGTGACTTTCTATGAGTGAGTACGCTAATCTTATTACGTCCCTCTTGTAAGTAGCCCTAAATAATTCATATATGTTTACTGAAAATATGAAAGGGGGAAAGGGGATGAATCTTCTAATTTTCTCCGTTTTTAGATCCGCTATCTTCTCGAACGGATCTCTGAAGACTGCTGGAGTAACGAACTTCACTACATAAGATCTAGCCTTCTCTACTTTCCTCTCTATTTCTTCGAAACCCTTAAGTTTGACGGTTACCTCAAAGTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGAAAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //