Array 1 12497-12130 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTMK01000022.1 Paracoccus thiocyanatus strain ATCC 700171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 12496 36 100.0 30 .................................... CGTCAAAAGCGCCTGTCGCACAAGGTCGCA 12430 36 100.0 30 .................................... AAGGCCGGCGCAGGGATGTAGGCGGCCTCG 12364 36 100.0 30 .................................... GTCGTGGGTCATGGTCAGTCCTCCGCATGC 12298 36 100.0 31 .................................... CACGAGGCGGGTTGAATAGGCCAGGCATGCC 12231 36 100.0 30 .................................... TATCTAGGCACCCATCAGCCGGGGCGACAC 12165 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 100.0 30 AGTGTAGCCATTCAGAAATCGCGGTCCAGCGGCAAC # Left flank : TGGCCCAAAGCTTCGAATCGCGCCAGTTGCGCTTGATCCTGCCCGTGCCGCCCGCGCCCCTGATTCTGGCCGGACTGGGGAAATGAGCGGCCTTGCAACCTTTCTCAGCGGGTATCGCCTGATGTGGATCCTCGTGATGTTCGACCTGCCGACCGACACCAGGCCACAGCGGAAAGCTGCCGGCAATTTCCGCAATTTCCTGCTGGACGAGGGCTTTGAACGCAGCCAGTTCTCGATCTACGCCCGTTTCATCAACGGCAAGGAAGCTTTCGAGAGCCGAGTTCGGCGGATCGAGCGCGCCCTGCCCTCGCAAGGTGATGTGCAGATCCTGACCCTGACAGACCGCCAATATCGCGACATCGTGCATTTTTCGGATCAGGGCCGCCGGGAGGCGCGAGAGAATCCATCCCAACTGGTGCTGTTCTGATGCCGTTTCCCCGTTTGACTACATTCCATCCTGCTGTATTCTTCTGTATTTACAGAAGCTTACAGCAGGATGA # Right flank : TTTCCGGCGGCATTCCCTCACTGACCGACGAAGCGGCCAAGGCGTTCGCATTTCTCCTGCCGCCACCGCTCGGCGCGCGCTTCATGCACCGCCTGACGCAGCCCTGCTTCGGCGGCACACAAGGGATGATATCGAGTGCGCGAGCATCGCTTAACAGCAATTGATCAAGTGACAGCGTTGCCGCCCTTCACCATAGCAGCACGGCGGAGACAGGGCTGAAATGCCGGCAGGATCCCCGGCCCCCGCCCTAGTTTGCTGTTCCGGGTTGCAAATGCGCGATGTTTGCGCATAACAACCCGAAACGCATGGAGCCGGGTGCAATTCCCGGCTGGCTCTTCCGGCCGCCGATCCGCCGGACAACCCGAACCTACACCCCAAGATCGAAACTCGACATGCGGCCCCATTCCGGGCCCTGATCGGTCAGGAACGGATGACATGATTTCACTTGATGCCTACCGGACCCAATGGTTCGGCAATATCCGCGGCGACCTGCTGGCCGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTAGCCATTCAGAAATCGCGGTCCAGCGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 95235-97031 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTMK01000004.1 Paracoccus thiocyanatus strain ATCC 700171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95235 29 96.6 32 ............................G CCCTCCCGGTAGCGGATCCAGAGCGAACTGGT 95296 29 100.0 32 ............................. CCCGATATCGGGACAATCACCGACGAAGCCAG 95357 29 100.0 32 ............................. CCTGCCTTGGTGCGTCCGATGAATGGTATACG 95418 29 100.0 32 ............................. CCAGCCGAGGGGCTGACGCTCTACGGCAAGCA 95479 29 100.0 32 ............................. GACATAGACCTTGCGACCGATATCGTCACTGG 95540 29 100.0 32 ............................. ATAGTGCAGCGTGTCGGGGCTGTCATGCGCTG 95601 29 100.0 32 ............................. CGCTCCGGCACCACGCCGGCCCGCGATTGGAT 95662 29 100.0 32 ............................. TTCTGATGGACTGACCTGGACGCCGACGGAGA 95723 29 100.0 32 ............................. ATGCCGCACAGGATCGCAGCCCTGGCGCTGGA 95784 29 100.0 32 ............................. TCGTTCATGCCGTTGAAGGCGATGATGCCGTT 95845 29 96.6 31 ............................T GGTCGGCCGACATGGCGCTCAACAGTGCCGC 95905 29 100.0 32 ............................. TGGCACGGGTGTTTGAAGAATGTGTTCCGTGC 95966 29 100.0 32 ............................. AGCCACTGCCGTATCGAATTGCGCTAGGACAT 96027 29 100.0 32 ............................. TCGTCCGCACCTCGCGGACCGGCCGTGCTGAA 96088 29 100.0 32 ............................. GAGCCTCCCGTGCATCGCAACTCGCTCGATCC 96149 29 100.0 32 ............................. TCCGCCCTCACCTTGTCACCCGCGACGACGAC 96210 29 100.0 32 ............................. ACTGCGGGCGACGCTGGCCGAGATGGAGGAAG 96271 29 100.0 32 ............................. CCACATCCCCACCGCCTGCATGGCGATGACGG 96332 29 100.0 32 ............................. GGTGGATCATACGCGCCAATGGTATGCAGAAC 96393 29 100.0 32 ............................. GATGACCATCTTGCCTTCGGGCCAGACCAGGC 96454 29 100.0 32 ............................. CCGCTCCTGCCACCTGCCGAGAACCGCAAGCG 96515 29 100.0 32 ............................. GCCTCGCAAAAGGCGCGGATGCGGGCGAGCGA 96576 29 100.0 32 ............................. GCGACTTGGGAATCACAGTCACCCGGACGCGG 96637 29 96.6 32 ....................A........ CTTGCACCACCTGCCGCCTATCTGTCAATGCA 96698 29 96.6 32 ............................T TGACCACGCGACCAGAAAGAGATGACCGAATG 96759 29 100.0 32 ............................. CAGCGGTTCGGCAAGGACTACCTGCAAGCCAT 96820 29 100.0 32 ............................. AAGCCGGTCAGCACCGCCACCCAAAGCGCGCT 96881 29 100.0 32 ............................. CAGGCGACGTTCCTCGCGCGTTTCAAAGCCCC 96942 29 100.0 32 ............................. ACGACCGGCATCTCGGCGCAGGCGATGATCGA 97003 29 96.6 0 .......................T..... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.4 32 GGCTCCCCCGCACCCGCGGGGATAGACCC # Left flank : AGGCGGCCCGCGACGTGATGGCCGCCCCTGCCGAGAACATCGAGCGCGTGACACGGCGCATGACCGGCCGTGCGATCTCGGCCGAGGGGCTGATCCCAAGCATGATCGAACGCATCAAGGCGCTGGTCGAGGGCCGCGGCTGATGGCGCTGACCATCATCGTGACCCGCGACGTCGAGGCACGCTATCGCGGCTTCCTGACCTCGGTGATGCTGGAGATTTCTCCGGGGGTCTACGTAGCCCCGAACATGAGCGCGGCGGTCCGCGCCCGCGTCTGGGAGGTGGTGTCCGACTGGTGGCACAGCCTGGGGCGCGGCGCGCTGGTCCTGGTCTGGCGCGACAAGGCCGCGACAGGTCATCTGCGCATCGAGACGCTGGGCGAGCCCCCGAAAGAGATCGTGGACGCGGATGGTGTTTTGCTCGTAAAACGATAGCAGACGGCAGAAATTTCGCGTGTTTGCTTTTTGATAATTGAATGATATGAGGGTATTGCCTCCGAGA # Right flank : CGCGGCCCGCATTCCGCTGCGGCCCCCGCGGTAGGCGGTAGGCGGTAGGCGGTAGGCGGTAGGCGGCAGGCGGCAGGCGGCAGGCGGCGCTCGCGATTCACGCCTGCGGCTCCTGATCGTCGCCGCGGTTTGGCGGACGGGAATGCCCCCCCGATGCCGCAAGGCAGGCTGGCTGCAAAGCGAAAAGCCCCGCCGAATCAGCGGGGCTTTTTCATATTCGACCCGCGCCATCAGGACGCGGCAGGGATTTAGGCCTTGGCCAGGTCGCGCTTGATCTTCAGGGCGCGGTCGGACAGTTCCACATCCTTGGCCTTGGCAAGAAAGGCGTCCAGCCCGCCACGATGGTCGACCGAACGCAGCGCCGCGGCCGAGATACGCAACTGGAAGCTGCGGCCCAGCTTTTCCGACAGCAGCGAGACTTCGTTCAGGTTCGGCAGAAACCGGCGACGGGTCTTGTTGTTGGCGTGGGACACGTTGTTGCCGCTCATCGGGCCCTTGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //