Array 1 367-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWS01000054.1 Synechococcus sp. NKBG042902, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 366 37 100.0 36 ..................................... TAATCATTATGCGTCCCCCATTAACAAATTTGCTTG 293 37 100.0 36 ..................................... ATGGACTCTTTAACTGTGGATAGAAGGGGCCGAAGC 220 37 100.0 39 ..................................... ATCAGTTTTGCTTGAGAAAGCTGAATTCCTCCATCAGAA 144 37 100.0 35 ..................................... TAAAGACCAGATATCTCTCAACAGAGGTATTCCCA 72 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 37 CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC # Left flank : CACTCTTTTTTACCTGATCATTTACGACTTACCTTCTACAAAGGCAGGGGATAAGCGCCGCAAGCGTTTGTTTGATTTATTATCGGGTTATGGCACTTGGAAGCAATTTAGTGTTTTTGAATGTTTTCTGACGACGAAGCAATTTGCAAAGCTACAAACTGCGATAGAAAAACTGATCAAACCGGATGAAGATGCTGTTTGTATTTATATTCTCGATGCCACGGCTGTTAAAAAGGCGATCGCCTACGGTACATCTACGCCAGAAAAACCGGGTAGCATCATCCTTTAGATTTGACCTAAAATCAAATTGGCAAACCCATAGCGTGACCAAAAATCCTAGGGACTTCGCCAAAACCTCTAGAACCTTGAAAACTCAATACTTTTCAATACTTAAAGGTCAACAATTTATAGAGCGATCATGGGTAAAATTGGATGCATGGAGCGACATCTGCCAAATGAGCTTTGCAAAGCTAGGTATCGTAAGAGTCCTGGCTCGCGGA # Right flank : CAGCCCTACCAAAATCTGTGTGATTTCGTTCAATGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 2056-2323 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWS01000058.1 Synechococcus sp. NKBG042902, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2056 37 100.0 43 ..................................... GTTGTTGAAGAGAAATAGGAGCTACGATAGCAATCACATCTGC 2136 37 100.0 39 ..................................... GAGTATTCATGGATTTCTCCTTAAATAAATGATGCCCCT 2212 37 100.0 38 ..................................... TTCAGCTAATTCAGCATAAGAACGTTGAATCTTAACAA 2287 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 4 37 100.0 40 GTTCCACATCCCAAAAACCCCGCAAGGGGACGGAAAC # Left flank : TTAGTACGTCTTCTGGAACAGCGGTGTTTGCGGGTGCAATATTCTGTTTTTGAATGCCCCCTTGAGGAAAAAACTCTCCGTCGTCTGCTAGAAGAGCGCTGGCTACCGACTCTGAATCTCAATCAAGACAGTTTACGGATTTATCCGCTCGATCAAAATGCGATTCGGCGCACGTTTGTTTATGGCAGTCCACCACCCTATGAGCCACCAGATTACGTTATTTTGTAGCGCCAAAGATTGTTACGAAATATTTCACTCGGTCGGTTTGTTGTCGCTCTGTTTGAGGAGCCGTAAAGTTCAGCGTTTGTAAATAAACGTCATAAAAGTCTTGAACTTTGTGTTGATGCAGCGAATTTTCTTGATATGATTCTTTTTAACTAAGTTTTTAGACTTTTTGATGTCAGCAAGCTTTTCCAAAAAGTATTTTTGCCAAAAGGCTTCACTGTCTGACGGAAACGTACCTCGAAAACTGCATATAGCAATGTTTCCAAAGACCTAGG # Right flank : TACACACGCT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCACATCCCAAAAACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 60-478 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWS01000051.1 Synechococcus sp. NKBG042902, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 60 37 100.0 39 ..................................... CAGCAGGTATCAGCTAGCTGCTCAATCAAACTTTCCGGG CA,C [72,79] 139 37 100.0 37 ..................................... TTGATTCCCGGTCTAGCCAAGTCCACTAAGCGCAGCA 213 37 100.0 37 ..................................... AGCAAAAATAAGCGCATTCTTGAAGTCTTTATCAGTG 287 37 100.0 40 ..................................... CTGTTTGAGGTTGAACGGGCGAAGCGTGCTGAGTTACTTA 364 37 100.0 41 ..................................... TGCAGAATTGAACAACTTGCATCAAGTATTAAAAGACCTGC 442 37 97.3 0 ...........................A......... | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 99.5 39 GTTCCACATCCCAAAAACCCCGCAAGGGGACGGAAAC # Left flank : CCCCGCAAGGGGACGGAAACCCCGGGGCAGGAGTTTCGTATGAATTTCGTAATTTGTTCG # Right flank : CAACAATCTCTAGGTTCCAATTTGCTTTGAATGGTCACAACAGAATATGGCTTGTGGGGTAGAAATTGTTGATTATCATTCGTGAGGCATAGATCGTTATGGTTCGTATACCCAGTCATCGCGTCCCGACTCATCCAGGAGAAATGTTGCGGCAAGAATTTCTAGAGCCTTTGGGCCTAACCCAAAAGGCTTTAGCAGTTGAATTGCGCGTTCCATACCAGCGGATCAACGAATTAATTAGAGGAAAACGAGGAATCACACCAAGTACCGCATTACGCCTCGCAAAATTCTTTGGCAATACGGCAGATTTTTGGCTAAATTTGCAGTTGCGCTGGGATTTGTACCATGTACAACGAGCAGAAGCCCAGGAACTCGCAAAAATCGAGACCCATGTACCAGCTTGACAAAGGCTATATTTTTCAAACTCAGATGATTTTTATTTCCCTTAAGTTTGGCAATGGTGAAATGCGCTGTGATGAAAAACTTTGACTGTCCATGAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCACATCCCAAAAACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 3254-3434 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWS01000053.1 Synechococcus sp. NKBG042902, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================== ================== 3254 38 97.4 34 ...................................C.. GCCCCCCAACGGGACGACCAAAACCTGCTGGGGT 3326 38 100.0 33 ...................................... CACGTATGTGGGGTTTGAAGTGTTTTTCTCAAG 3397 38 97.4 0 ...................................A.. | ========== ====== ====== ====== ====================================== ================================== ================== 3 38 98.3 34 CTTTCCAACCCAACTCCCCGCAAGGGGACGGAAACTCC # Left flank : GCTCATGCCGGATTCCCCCGTTGCTTGGATTGTGAAAAATTCGATGTCGTTTTCTGCGTAGCGTAAAATAGCCATGGTGACCTCCTGTGAAGGTTACGCCCAGTGGGGTTTTGGTGTGGCTGCACCAGGCCCGCGACTGGGGTTTAACGTTGGTTTAAAGATTTTAAATTGCCCACATTTTACCCCAGGGCTGACAATATCCTGTCCCTAAAAGCAGTCAACCGTTACGAAATCTAAAGTTATGGCCCCAAAGCTGGCCTAATTTCCAGGGGATGTATAGACTAAAAAACAAGTTTAGGAACTGCGATCTCCACAGGTCGCCCGAACCTTGAAAGCCGCATTATTACGTTGACCTATGGAGATGCCTTACCCAGTAAGGTTTTCAGGCGTCGAAAAAGAGTAATTTCCAAGGGTTTTGGTCTGATTTTTCGGCTGTTTTGACCCCTATGGAGATCCGCAGGGTTCAAAGGCAGTCAGAGCAAAGGTTTCAAAATGGGTCT # Right flank : | # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAACCCAACTCCCCGCAAGGGGACGGAAACTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.80,-10.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 292-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWS01000035.1 Synechococcus sp. NKBG042902, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 291 37 100.0 36 ..................................... TTTTTGGTCGGATATCTCCGCCGATGAAGTGTCCGG 218 37 100.0 36 ..................................... CTCAGTGGCAAGGACTAATTCAGCCCCATTGGTCAA 145 37 97.3 35 ..............A...................... TCCAGCTCCTTAATGGCAATCTGCAAAAACTCGAT 73 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 99.3 36 GTTTCAGTCCCGTGGTCGGGATTTAGTGGTTGGAAAG # Left flank : GCACTCACTTATCTTTGATGCAGTGACCCTTAACCTACAAATCATTGGAGAAGCCAGCAAGAAAATCCCAGAACAAATCCGAAATCAGTATCCACATATTCCATGGCGAAACATCATTGGCCTGAGAAACATTATTGCCCACACGTACTTTTACTTGGACGAAGACATTCTTTGGCACACTATCCAGCATGAACTGGAACCACTACAAAAGTGCATCCAGGAACTCTGGGATAAAGAAGCATAACTAACCAAGGCAAAACAGAAAACAGTTTAACCTTTGTCCTCCAACTTCCCGATGCAGTAAACCATAGTCATCATCGACATCAATGTCCAAGTACCATCAAAGCCTACGTTAATTCGATGGCGGAATTCAGCCTCAGACTCATTGGCGTTATATGCCTTAATGAGTTCCATGTAGTCACGGTAAACCCAGTAACTCCAAAAGATAGTAGAGGCCAGGAAGAATAAGGTAAAGAAACGAAACAAGTTTTAAGAAATAT # Right flank : GTAGCCCAAGTGTGACCCCACTGGGAAACGACGCTGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTGGTCGGGATTTAGTGGTTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 8246-8672 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWS01000043.1 Synechococcus sp. NKBG042902, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 8246 36 97.2 40 ...................................A AGTTTCCCATCGTTCCCACTCCGCCTGGGCGGCGGGTTTT 8322 36 100.0 47 .................................... TGCTTATGCCAACTATAGTTCCTACCGGTGCGTTTGGACAAATTGCT 8405 36 100.0 41 .................................... GGCTGGGACGAGGAAGAAATGCCAGCCACCGAGCTTCATGC 8482 36 100.0 38 .................................... TCAAGAAGACGCGAGCCATAGGCCACACTCCTTCTTTA 8556 36 100.0 45 .................................... TGGTAGCGAATCTCCACCTCTCCCGAGGTTTCGCCCGGAAGGGCC 8637 36 97.2 0 ...................................C | ========== ====== ====== ====== ==================================== =============================================== ================== 6 36 99.1 42 CTTTCCAACCCAACTCCCCGCAAGGGGACGGAAACT # Left flank : TTTTTGGTACCCAAAGGGCCATCCTGAAAATGTTAGATATCGGCAATGATGCGGTTTATGACACGGCCAAGGTAACTGTCCATTCCAGGGTTGCGAATGCTTATCGTCGGTATATGAAACAGTAAGTAACCCGCGACTGGGGTTTAATGTTGGTTTAAAGATTTTAAATTGCCCACATTTTACCCCAGGGCTGACAATATCCTGTCCCTAAAAGCAGTCAATCGTTACGAAATCTAAAGTTATGGCCCCAAAGCTGGCCTAATTTCCAGGGGATGTATAGACTAAAAAGCAAGTTTAGGAACTGCGATCTCCACAGGTCGCCCGAACCTTGAAAGCCGCATTATTACGTTGACCTATGGAGATGCCTTGCCCAGTCAGGGTTTCAGGCATCGAAAAAGAGTAACTTCCATGGGTTTTGGTCTGATTTTTCGGCTGTTTTGACCCCTATGGAGATCCGCAGGGTTCAAAGGCAGTCAGAGCAAAGGTTTCAAAATGGGTCT # Right flank : CCACTCGCCGGCAGATGCGGATGTGTTGTGGCGGACCTTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAACCCAACTCCCCGCAAGGGGACGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 448-182 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWS01000034.1 Synechococcus sp. NKBG042902, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 447 35 100.0 43 ................................... GCACCTACTATTACGGCCTCTTTATTCAAGTAAAATTGGCCAT 369 35 100.0 42 ................................... GCCATCCCAGGCCAATTCCCCTTGAATATATTTTTCTACCGC 292 35 100.0 41 ................................... AAGCGAAGTTCTACCTCTCCAGAAGTTTCGGCGGGGAATGC 216 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 4 35 100.0 42 CTTTCCAACCCAACTCCCCGCAAGGGGACGGAAAC # Left flank : AAACGCCGCACTAAGTTAGCCAATTGTTTGGAAGGTTACGGGCGACGGGTGCAATACAGTGTGTTTGAGTGTTTTTTGTCTTTGTCAGAAATGCGCAATTTACACAAGGCATTGCAAAAGCTGGTTAATGAGCAGGAGGATAATGTGCGCTTATATTGGATCACTCAGGATGCTTTTTCGAGAATTTTGACTATTGGCAGTCCTAAGCCGGAACCGCCGCCAAATTATTACATTATCTAAAGATGTCCGTAAAAAGTTTGTCAGGTTTGGAAATCTATTGCTAAGATTTTGCGTATTAAAAGCGCGATCTCCACAGGTCGCCCGAACCTTGAAAGCCGCATTATTACGTTGACCTATGGAGATGCCTTGCCCAGTAAGGGTTTCAGGCGTCGAAAATGAGTAATTTCCATTGGTTTTGGTCTGCTTTTTCGGCTGTTTTGACCCCTATGGAGATCCGCAGGGTTCAAAGGCAGTCACAGCAAAGGTTTCAAAATGGGTCT # Right flank : CGACATGCTCCCCCCCTTTCTCAAGGGGGGTTGGGGGGGATCCCACCCTTTAGCTACTTACAACTAGAGTTTGATATTCTTACGCCCTCTCCTTCACAACAAGAAAGTTGGGGAGATCCACCCTTCCAAACAAATAAACAGCCGTAATTAACAACACTCTTTTACCCCGCTGAGAGTAGATC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAACCCAACTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 18095-18636 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWS01000034.1 Synechococcus sp. NKBG042902, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 18095 35 100.0 36 ................................... CCCTCAACCCAAAGTCCTCCGTCATCACCGAAGTGA 18166 35 100.0 31 ................................... CGTAACAACTCTGAGGGACTGATATTTTTAG 18232 35 100.0 39 ................................... TGAGAACCAATACAAACATCATCCCCGCTGATGCGACAT 18306 35 100.0 40 ................................... TTCTCTCAAGGTTGAGTAGTGAGATGTAAACGTACATGAA 18381 35 100.0 39 ................................... AAGTAGTAGCAATTTGAAAAGACATAGCGTTTCTTGGGT 18455 35 100.0 38 ................................... TCCAATTTGTGGACATGCGCCACACAAAAGGCGGCTGG 18528 35 97.1 39 ....T.............................. CAGTATCCTCAGGGAGATCTAGAACGTACGGGTGTCCAT 18602 35 97.1 0 .....T............................. | ========== ====== ====== ====== =================================== ======================================== ================== 8 35 99.3 38 CTTTCCAAACCTTTACCCCGCAAGGGGACGGAAAC # Left flank : TGAGGATAGACACAAGAATCCTGCGATTTTGTGACTAAGTGTCAAGTCGACGGAGAAACTGTTTCGTTTAAGTCATCTACTTTGGGGGTGGTGGGAGTAACAACAATTTGGGCCACCGAAGGGAATCATAGCATAAGAGTGTGGGATGGGGTCAATAGGGGAATGATATTTTTTTGTGTGATACGGCATTAATTAAAGGTATGAGGGGCTTGGTGGTAGCCAAAGGTTAAAAAGTTTAAAGAAAAGCGACGTGACTCTGGTAGGGATGGGAATGGGCTGCTATGATTCAAGGCAATTGAAAGCGCATCGCCGCAGGTCATCAGAACCTCGAAAACCTAGTTTTTTCGTTCACCCTATGTGGATCACTTATGCCGCAAGGGTTTCGGACGCCACCTGTAAGCAATTTCCATTCGTTTTGGAGTGCTTTTTAGCTGGTTTTTACCCCTACGGAGATCCGCAGGGTTCAAAGCTAGTCAGAGCAAGGGTTCTAAAATGGGTTT # Right flank : CGATGGCTCCCCCCTTTACCAAGGGGGGTTGGGGGGGATCCTCACCCTCTCCTTTACAGCAGTAGGGATTAGGGGAGATCCCACCCTTCCAAATAAACAGCCGTAATTAACAGCACTGCTTTACCCTACTGAGAGTAGATCCCTCGCCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAACCTTTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //