Array 1 874960-876058 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082323.1 Thermus thermophilus strain N-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 874960 36 100.0 35 .................................... TCGTAAGCGATAACGGGGAGGGCGACGCCAATCGC 875031 36 100.0 41 .................................... GCCACGGCGTACGCCGCCGCCCAGAGGGCCTTCTGGTTCAG 875108 36 100.0 39 .................................... TTTGCGAGGATTACCCCCTCGGTGGGCCCGAGGAGGTTC 875183 36 100.0 39 .................................... CACGTCCCTCACGACCGAGGCCAGGGACGTCTTCACGTG 875258 36 100.0 38 .................................... CTCCCTCCTTTCCCGCCTATCTTACTCCCCCATGAGGT 875332 36 100.0 42 .................................... ACTTCAAAGTGAAGGAGCCTAGGGGCTTGGTCATAGACTGGC 875410 36 100.0 39 .................................... GGCGAGGAGCCGCCGCACCCCGATGATCTTGCCGTCGGA 875485 36 100.0 40 .................................... CATTGGCGTGGGTGCCACCCCGCCTACGCCGATGCTACGG 875561 36 100.0 43 .................................... TTTGCCCTTCTAGGGCCTTCTGGAGTTCGTGAAGGTTCGCCAC 875640 36 100.0 40 .................................... CTTCAGGAATGGGCACGCCCACCTGCCGGAGAAGTTCAAT 875716 36 100.0 41 .................................... CTAAGCAGGAGGAGGCCCACGGCCTGGTAGAGGCCAAAATA 875793 36 100.0 42 .................................... ATCTCTAACCAGGCTACGGAGAGGATAGTGGAACTCTACCGG 875871 36 100.0 39 .................................... TATCAAGGGTCTTCCGCAAGCGGAAGGCGCGCGGGGAGT 875946 36 100.0 41 .................................... CAGCCCGCTCCATCTCGGCCAGCTCTAGGGCGTGGGGACCA 876023 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== =========================================== ================== 15 36 99.6 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AGGACCCGGGCCCGCAAAAAGCGGCGCCGCTAAGGCTTCCGCAAGCCCCTGGGGGGGCTGGCAGCGCTCCAGGCCCAGCGCCTGGAGGCTGCCCTCTTGGGACGGGGGCGCTGCGCCCCCTTTTACTTCTGGCGGTAGAGCGGGCCTTTGCTATACTTGTCAGCAAAATTACGATGCAACTGGCTTTCTTTGGGCTTTGAAAAACAAAGCTCAGTCCGGTAGCCCCTTCCTCGCCGAAATTTTGACCTGGCCCAACGTTGCGGTGTGTGCTATACTCCCCCTAACCCGGACCTCCGGGTGGGGACCTTGAAAGCCAGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTCCTCCTGTGGCTTTGCATCGGCATAAACCCCCGAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTTGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACCTCGGCCTCGGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCGAGAAGCCCCTTCACGCAGGCCAGCTCCTTCTGGAGGAGGGCGAGGACCTCCTTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 877256-877594 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082323.1 Thermus thermophilus strain N-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 877256 36 100.0 40 .................................... CACCTCACCTCCACTCGCTTATCACGCGCCTCCACCAATG 877332 36 100.0 41 .................................... GGGGTCATAGATCCAGTCCCTAGGCGGGCCGAGGCGAATCC 877409 36 100.0 40 .................................... TTGCTGATTGTGAATGATGCCCATTCCTCCTTAGAAGGAA 877485 36 100.0 37 .................................... GCTCGTCACGGGAAGCGCAAAAAGGTAGCTCCTAAGG 877558 36 94.4 0 ...............................A..T. | T [877591] ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 98.9 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : CCTTGGCCTTGCGGAAGGCGGCGAGGTGGTAGGGGTTGACCAGGGCCACCTGGAGGCGGTTTTCTGCCAGGAGCTTGAGGAGGGGGAGGTGGTAGGCGCTGGTGGGCTCCAGGGCGACCCAGGCGGGGTTGTGGTGGGCGAGGGCGGCGAGGAGGGCTTGACGGCCTTCAGGGGAGTTGGGGAAGCGGAGGCGGGTGGGTTTGGGGGAGTTGGAGACGAGGGCCAGGTCCAGGTGGGTTTTGCTGACGTCAATGCCGGCGAAGGTCATGGGCTCTCTCCTTTTGGTAACCTGAGGGAGGTGGCCACCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTGACGACCGGGATACTGTGCGGCGGGGAGGCCGGGGTGGGTGGCTACCGATCAATCCCGCGGGCGTGGTGGCCCGGCAACCGGGGCGGTGGGGCCTCCCTCAGGGGGCAAGATACATGCGACTCGGTTATGGCCCTCCAAAAGGCCCTTGTCTTCTCCA # Right flank : CTTGCCCATCAAGCGACCCCTTTGTCGTGGGTGAAGGCCTGTACCCCTCGCGCTAGGAGGCTTTCACGCAGGCCCCGGCGCGCCTGCCCACCCACCTTCCGGGCCCTTTCCCAAAGGGGCGCTCCCAGAAAAGGGGCCCGGGCGGTTCGGCGCCCGGGCCTTCGCGTCGTTCCAAATCTGGGGCTCTTTAGAGGACCAGGGTGCCCGCCCCCACGGCGCTTAGGGTGGGGGCCTCGAGGTCCAGGCGGTGGGCCAGGACCTTCCCCTTCCTTTCCCGGAGGAGGGGGAGGAGGCTTGCCACCACCTCCACCCCGTCTATGCGGGTGGGGTTGGCCCCCAGGAAGGCGAGGGCGGCCTCCGGCTCCCCTTCCGCGAGCCTTTCCAGGAAGCCCAGGTCCCGCCTCCTCGCCTCCTCCGCCAGGGTGCGGGTGAGGGGGGTGTCCCCGAAGCGGGGCCCCACGTGGGAGAGGTCCACGGCGAGGACGAGAAGGCCCGGGAAG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 1474-1662 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082324.1 Thermus thermophilus strain N-1 plasmid unnamed1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1474 36 100.0 41 .................................... ATGTGGCAGTCCAACGACGACGGCTTCGGCATGTTCTTTCG 1551 36 100.0 40 .................................... CATGATGAGGGCGTGAGCGGCCTCGGGCCGGGACTGAAGG 1627 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== ========================================= ================== 3 36 98.1 41 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : GGAGCGCTTGTTGGAGGGGGTGAGCCATCCCCTGGGGTTCCGCAAGCCCCTGGGGGAGACGATTGAGGTGCAGGCTCAGCGGCTGAAGGCGGCCCTTCTGGGGCGGGGGCGCTACACTCCCTTTTACCTATGGCGGTAGGGGCAACTCTTGCTATACTTATCCGCAACATTGCGATGCAACTGGCTTTCTTTGCGCTTTTTCAAACAAGCTCACTTTGGGAGGCGTTTCTTCGCCGATATTTTAACCTGGTGCAACGTTGCGGTGTGTGCTATACTCTTGCCAACCCGGACCTCCGGGCGGGATCTTGAAAGCCGGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTTCTCCTGTGGCTTTCCATTGGTGTAAACCCTCAAAAACCCCCATTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTTTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGTCGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGCAGGAGGGCCAGCACCGCTGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACCTCGGCCTCGGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCGAGAAGCCCTTCACGCAGGCCAGCTCCTTTGGGAGGAGGGCGAGGACCTCCTTGCTC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 2861-3804 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082324.1 Thermus thermophilus strain N-1 plasmid unnamed1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 2861 36 100.0 39 .................................... TGCTCTAATCGGGCCTGTTCGGCTATGGCCTTGGGGCTC 2936 36 100.0 40 .................................... ACAACCCGCCCAAAGGGAATGCCGCTAGCCCCAGACACAT 3012 36 100.0 36 .................................... CAGTCCCACCCCTCGTGGGGGGCGGCCCTGTCGTCG 3084 36 100.0 39 .................................... CGCACCCTCCTTCCGAGCTTCCACCCGGCGTACATGGCC 3159 36 100.0 39 .................................... TTCAGCAGACCGAAGTGTCTTCCGTTGCGAACAGTGTAG 3234 36 100.0 42 .................................... CCTCATCAGCGCATCTAGAGCCTGAATTATCCTCATTTCTTC 3312 36 100.0 40 .................................... GCCATCACCGTGAGGCCGCCCTCCACCAGCTCCCCCTCCA 3388 36 100.0 40 .................................... TTTCTTAATTACGAGCCAGTCATTCGGATAAACCATGAGA 3464 36 100.0 39 .................................... TGAAAGTTTCGGTGGTCCCCCCCGCCCTCCACCAGCGGA 3539 36 100.0 40 .................................... CCGCAGCTGGGGCAAGTGCAACCGCAGTAGCTCATACTCC 3615 36 100.0 40 .................................... TTGGCGGTCAGGGTTTGGTACCGCACCGTGTTCGGCGTTA 3691 36 100.0 42 .................................... TTCTTGATTATCCTGACCTTGTCCTTCATCTTTGACCTCCTT 3769 36 97.2 0 ..................................C. | ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 99.8 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : TGGCCTTGCGGAAGGCGGCGAGATGGTAGGGGTTGACCAGGGCCACCTGGAGGCGGTTTTCTGCCAGGAGCTTGAGGAGGGGGAGGTGGTAAGCGCCCGTGGGCTCCAGGGCGACCCAGGCGGGTTGTGGTGGGCGAGGGCGGCGAGGAGGGCTTGACGGCCTTCAGGGGAGTTGGGGAAGCGGAGGCGGGTGGGTTTGGGGGAGTTGGAGACGAGGGCCAGGTCCAGGTGGGTTTTGCTGACGTCAATGCCGGCGAAGGTCATGGGCTCTCTCCTTTTGGTAACCTGAGGGAGGTGGCCACCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTGACGACCGGGATACTGTGCGGCGGGGAGGCCGGGGTGGGTGGCTACCGATCAATCCCGCGGGCGTGGTGGCCCGGCAACCGGGGCGGTGGGGCCTCCCTCAGGGGGCAAGATACATGCGACCTAGGCAGACCTCTTCCCACTCCGTGAGCGGGTATGGCATG # Right flank : CTCGCGGGGGCCTTTGGCTAGCCTTTTCCCATGGGCAAGCGTCTCTATGCCGTGGCGTACGACATTCCGGACGACACTCGCCGGGTGAAGCTGGCCAACCTCCTGAAAAGCTACGGGGAGCGGGTCCAGCTCTCCGTGTTTGAGTGCTACCTGGACGAGCGGCTTCTGGAGGACCTGCGGCGGAGGGCCAGGCGGCTTTTGGACCTGGGCCAGGACGCCTTGCGCATCTACCCCGTGGCGGGCCAGGTGGAGGTTTTGGGCGTGGGGCCTTTGCCGGAGCTCCGGGAGGTGCAGGTGCTGTGAGGCCCCGCGTGCACACTTCACACGGGTCCTGGGGAGGCCCGTTTATACTCGGGCCATGCTTGGGGACGGCCTGAGCGTGGCCCTGGCGGGACTTTTGCACGACGTGGGCAAGCTCTATTCCCGCGCCCGCTGGGGCGAGCGGGACGATCAGGTTCCCGACCGCACCCACACCGCCTACACTGCCCACTTCGTCCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 11834-12547 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082324.1 Thermus thermophilus strain N-1 plasmid unnamed1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 11834 36 100.0 41 .................................... CGGAGGGGCCCCCTTCTCCCCCCGGGGCGGCATTTTCCCGG 11911 36 100.0 42 .................................... TCCCGAGGCCCGGTAGTGGGCCGTTGACCTCGGGCGCCTCCG 11989 36 100.0 37 .................................... GACCTTGAGGAGGGCTCCGAGTCTTTTCAGGGCGGGT 12062 36 100.0 38 .................................... AACCCTCCGCGCCATCGCCTCCCGCCTCTACCACCTCT 12136 36 97.2 40 ...................T................ CCGTAGATAAGGCGCCCGGGGACGACCACGTCAAGGCGCA 12212 36 100.0 38 .................................... CGGGGATGTAGTCCCCGGAGCTAGCCGGGGGAGGACCT 12286 36 100.0 42 .................................... GGTGCGAGGGGGTGGACCGCTAGTTGCGCCTCTATTCAAGAT 12364 36 100.0 37 .................................... CCGGGAAGGCCGTGGGCTCGGGCACCGCCGCCCCGAG 12437 36 100.0 39 .................................... CACAGAGCGGCCCTTTGGGGTGGGTTAGAAGAAGAAGAA 12512 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 99.2 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : CGGCCCGGTCGGCCACCTCCAAAAGCCCCTCCTCGGCCAGGGCCAGGAGCAGGGGGCCTCCTCCTCCGGGAGGAGGTCTAAGGCCAGGCGGAGGACCTCCGCCTCGGTGCGCCCCGTGGCGCGGGCTAAGCGCGTGCGCCTTTCCTCCGGGGCCAGGGGCCACTTGACACGACGGAACAGGCATTTTTCTCGCTATCGCAAAGGGAAGTAAAGTAGCGAAGGTTCTTTTTGAGGCACATTTGGACGGGGTACACCGTTTCAGCGAGGTGCTATAATGCCTTTGTCCGGACCTCCGGACGGGGATCTTGAAAGCCAGCTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTCCTCCTGTGGCTTTCTATCGGTGTAAGCCCTCAAAAACCCTCATTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTTGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACCTCGGCCTCGGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCGAGAAGCCCCTTCACGCAGGCCAGCTCCTTCTGGAGGAGGGCGAGGACCTCCTTGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 13747-14688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082324.1 Thermus thermophilus strain N-1 plasmid unnamed1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 13747 36 100.0 42 .................................... TTCGAAGCGCCCCGCCCCGAGGCACTTCCCACACCCTTTCCC 13825 36 100.0 44 .................................... GTGCTCCTTCAAACTCCTCTCCAGAGCCTCCTGGATCAGTTCAT 13905 36 100.0 40 .................................... ACTCCCTCTACGCCCCCTAACTCGCGGTACGCGAAGAGGG 13981 36 97.2 36 ........A........................... GACAGGTAAGGGTGTAGAGGTCGTCCAGCTTCATAA 14053 36 97.2 37 ........A........................... AAGTGAGGATGTACCCCCGCCCCTTGAGCTTCTTCTC 14126 36 100.0 37 .................................... CTTTGCGCCGCGCGGCCTAGCGCCGACCGCGTATCCC 14199 36 100.0 37 .................................... CTTTAAGGGAGTCGCCTTCGCCCACGTCTTCCTTGGT 14272 36 100.0 40 .................................... ATTCTCCAACGAACCATGAGATTCACCCCCTTTGAGATTC 14348 36 100.0 38 .................................... GCGAGGAGCCGCCGCACCCCGATGATGCGCCCCTGGTC 14422 36 100.0 40 .................................... TCCTTCTTTGGGCCAGCTGATGCCCCAGGCAAGCCCCGGT 14498 36 100.0 41 .................................... GCTTCTCCGTTGCGCTGAGTTCGCCGTTGCTCCAGACATGG 14575 36 100.0 42 .................................... GTGTGGCCGCGGCTGCGCGCCGCGCGGCCCTTGCGCCCATGC 14653 36 91.7 0 ..............................G..CT. | ========== ====== ====== ====== ==================================== ============================================ ================== 13 36 98.9 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : TTGGCCTTGCGGAAGGCGGCGAGGTGGTAGGGGTTGACCAGGGCCACCTGGAGGCGGTTTTCTGCCAGGAGCTTGAGGAGGGGGAGGTGGTAGGCGCTGGTGGGCTCCAGGGCGACCCAGGCGGGGTTGTGGTGGGCGAGGGCGGCGAGGAGGGCTTGACGGCCTTCAGGGGAGTTGGGGAAGCGGAGGCGGGTGGGTTTGGGGGAGTTGGAGACGAGGGCCAGGTCCAGGTGGGTTTTGCTGACGTCAATGCCGGCGAAGGTCATGGGCTCTCTCCTTTTGGTAACCTGAGGGAGGTGGCCACCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTGACGACCGGGATACTGTGCGGCGGGGAGGCCGGGGTGGGTGGCTACCGATCAATCCCGCGGGCGTGGTGGCCCGGCAACCGGGGCGGTGGGGCCTCCCTCAGGGGGCAAGATACATGCGACCTGGTCTCGGAGGGGGTGCGGTTGTGAGCCGGGCCCTGA # Right flank : CGGGCCTGGGCTTGTATCCTTTCCCTAGGAGGCGTCCATGCAAGCCCCGGTGTACCTGTGCCTTCTGGGCAACGACCCGGCCCCGGCCTACTTGGGCTTGAAGGTGGTGGAGCGGGAGGCGGGGAGGGTGGCGAAGGCCGTCTTCTACTCCTTCCCGGCGTGGAACGAGGAGTACGGGAAAAAGCGCCAGGCCTTCTTCCGCCTCCTTTCCGAAAAGGGCGTCCTCTACGAGGAAAGGCCCCTAGAAAAGGGACTGGAAGAAGCGGAGGCCCGGGAGGTCTGGGTGAACCTCACGGGAGGGGCCAAGTACTGGGCGGTCCGGTTCCTCGGGCACTGGCGGCGGCCCGGCGCCCGGGTCTTCCTCGTGGAGGGCCACCGCGCCCTCGAGGCGCCCAGGGCCCTTTTCCTCTGGCCCCGGGAGGAGGAGCGCTCCCTTGAGGCCGAGGCCCTCACCCTGGAGGAGTACGCCAGGCTCTATCTGGAGCCCCTGGGGGAGGCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 5 58653-57212 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082324.1 Thermus thermophilus strain N-1 plasmid unnamed1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58652 29 100.0 32 ............................. ACGCCACCCGCTCCTACTCCGAGGTGACCCGC 58591 29 100.0 32 ............................. ACGATTTGGCCGGGGCCCTTTACGAGCTCTCT 58530 29 100.0 32 ............................. GTAGACCTGGCCCGCTTCGCGGCCGCCACTCC 58469 29 100.0 32 ............................. AGGTCATCGCCGCCAACATCGCCTATCTGCAA 58408 29 100.0 33 ............................. GCCGGACGCAGAATATAAGACGACCTTTGTCTA 58346 29 100.0 33 ............................. TAGGCAACCTCCTCAACGGGCTGATTCTCCACC 58284 29 100.0 32 ............................. CTGACAGCCCCCACCCGTCACAGGAGGCTAGG 58223 29 100.0 33 ............................. GGCCCTATCCAGTTTATCCTCAAGCTTGCGAGC 58161 29 100.0 33 ............................. GGTTAGCGCTATAAGCCCAAGGCCAAGGGGGTG 58099 29 100.0 32 ............................. ACCTCGTTGGGCGGCCAGAGAGAACAAGAGGG 58038 29 100.0 33 ............................. GGGGCCGCAGACCTGGTGGCCTGGTGTGGAGGC 57976 29 100.0 33 ............................. GGGCCGTAGTGCCTTGGGGCTCAGCAGCGCCTC 57914 29 100.0 32 ............................. AGGGTACTCAACGAGGCGGACGACCCACTCGG 57853 29 100.0 32 ............................. CTGGCCCGGGCGGCCTACCTGTGGCTCCTCCG 57792 29 100.0 33 ............................. CCTTTAGCCCAGCCGTGGCCCAGGACCCGGGCC 57730 29 100.0 33 ............................. CCCTCCGCCGTCCTGCAGGCCATGCTCCGGGCC 57668 29 100.0 32 ............................. GTGAAAAATCGGTTCCCGGCGTAGACCTCCAC 57607 29 100.0 32 ............................. CTTAGCCATTCGGCACCCCCTCCGGCCACGCC 57546 29 100.0 31 ............................. GCGATGTTGCCGGTAGTAATAGTAATGGCAA 57486 29 100.0 32 ............................. CCCCTGACACGACTCCGGGACGTGAAGCGGTC 57425 29 100.0 33 ............................. TCCTCTAGCAAGGCGCGCCGCTCCCGCGGGGGC 57363 29 96.6 33 .............G............... GGTCTTACGACCCCTCCGGGCCGGGCCTCCGGC 57301 29 96.6 32 ...........A................. CCGGAGGAGGTGCCCGACGAGCTTGCGGACGA 57240 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GCATGCGGGCGAGTTTGTCCAAGGCCATGCGGTACTGGCGCGTGGGGGCCTGGTGGTAGAGGAGCCTTCCCGCGGCGAAGAGGGCCAGGGCCTCTATAGGGTGGAGGGAAGGGGGGCGGTCGGCGATGCGGTAGAGCCCCCGGGCCAGGCGCTCCACGGGAAAGCCGAGTTCAAGAAGGGCCTCGAGGTCCCGCTCCACCGTGCGCTCGCTCACGCCGAAGCGGCGGGCGAGTTCCCCCACCCGCATGGGCCTGAGCTTTAAGGCCTCGGCCATCTGCAGGAGGCGGGCGCTCTTGGCCTCTTGTCCCATGTGTTCATGCTAAGCAAGCCGTTTGGGCCAGGGTGTGATTTTTGACCATGCTATACTGGGACCAGCGCCCATCCTGGCCTTTCCCCCTCCCCCGTTCGGGCGCTGGGGAACTTGACAGAAAAACCTGCAATCCTTCCTAAACAGACACATAAAGGGGGGTAAGCGGGCGTTTGTGCCGTCCTGGTCATGT # Right flank : ACCCCCTTCGGGCAACCCTTCCGTCCGACGGAAGCTTCCCCGGGCCGTAGACTGCCCTCATGAAGCGAAACGCTTGGGAGGTGTACGGCGAGGTTCTTAAGACGGCCCGGGAGCTTGGCCTCGAGGGGGAGGAGCAAGAGGTGGCCAAGGCCCTCCTCGCCTGGCCCAAAGAGCGCTTCCACGCCCTCGCCGCCCGGGTGGGCCTAAAGGCGAAGTACCTGCGGCACGACCTTCTCCCCATCGCCTTTCTCCCCGAGCCCCTGCGGGAGGCGCTCCAAGGGGGGCTCCCCCTCCGGGAGGCCCACAGGCTCCACCGGCTCCTGAAGCGCGGGGAGCTTTCCCTTCAGGACCTAACGGGCAAGGACCCCAAGGCCCTCATGGCCCTCCCGGCCAGGCCGGGGGAGGTGGACCCTCGCCTCCCCGTCTGGTTCTTCCCCCCTGAGCCCTGGGAGGAGGCCCTCCCCATGGCGGTGGCCCGGGCCCTGGTCCAGCTCTACACG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 68516-69783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082324.1 Thermus thermophilus strain N-1 plasmid unnamed1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 68516 29 100.0 32 ............................. GCTGGCCTGCAGGACCTCCAGCATCTGGCGGG 68577 29 100.0 33 ............................. GCCCTAGACTCGGGCTATCCCGCCATCAGCGGC 68639 29 100.0 32 ............................. CCAGCGGATGGCGTCCTCATAGCGCATGCGCA 68700 29 100.0 33 ............................. GCAACCCCAGGGTTCAGGGGTTCAGTCGCCCAT 68762 29 100.0 33 ............................. TTCACCCAGCTTGACGGCGCCATCATTTCCCAC 68824 29 100.0 33 ............................. GCCATCCCGAAGCCGTGCGGGTTGCCTTCCCAC 68886 29 100.0 32 ............................. CTATCTTTCGCGAACTACCGGGCTTGGGCCGC 68947 29 100.0 32 ............................. TAGGCCATCGTGTCTAGGGAGGGGTTAGACCC 69008 29 100.0 33 ............................. GACGGTAGACCCCGAGACCGGGGAAATCCTGGA 69070 29 100.0 32 ............................. GAAAGCCCGAACTCATGGCGGACCGCGAACAC 69131 29 100.0 33 ............................. TGCCCCTCTGGCGGCCTAAGGAGGGTCATAAGC 69193 29 96.6 34 ............................A GACGACATCCTTAGCGCCCTCCTCATGGCCCTAC 69256 29 100.0 32 ............................. GTTCCGGCCTCCACCCTCCGGTACGCGGAGAA 69317 29 100.0 33 ............................. ACCATGAGCGGCGAGTTAGGGTGCGAAATCGGG 69379 29 100.0 33 ............................. GAGGCTCGCGGAGAAGGCCGCCACCTGCTCCCC 69441 29 100.0 33 ............................. TCCGACCCGCGCCGCCTCCTCTCTCTCTCCCTG 69503 29 100.0 33 ............................. ACTCGGGAGCCAAGACGTAGGTGGAGAACCGCC 69565 29 100.0 34 ............................. GACATGACCCCCGAGCAGCGCCGCGCCCTCAAGC 69628 29 100.0 34 ............................. GTGGAGTCTTCCCCTTCCTCTTCTGGCCCCCAGC 69691 29 100.0 35 ............................. AGCTCCCGCTTGAGCTCGTCCAGGAGGTACTTCGC 69755 29 93.1 0 .............A...........G... | ========== ====== ====== ====== ============================= =================================== ================== 21 29 99.5 33 GTAGTCCCCACGCGTGTGGGGATGGACCG # Left flank : GGACCCCACCCGCCCCGGGGGGCTTTGGGACCTCGAGGGCGAGGTGGAGGGCGGGGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTGCCGAGGAGCCTGAGGGGTGACCTCACCCGCTTCCTGGTAGAGGTGGACACCGGGGTCTTCGTGGGCCGGGTCAGCGCCACGGTGCGAGAGCTCCTTTGGGAACGGGCCGTGGAGAAGGCCGAGGGCGGCCGGGTGGCCCTCGCCTACCGGACGAACAACGAGCAGGGCTTCGCCTTGCGGCTTCACGGCTACCCGGACCGCTTTCTGCGGGACTTTGATGGTATAGTGCTGGTGAGCGTTCGGAACGCCGAGGCGGTGCGGAAGGCGGAGAAGCTGTCCAGGCAGGTTGAGAGGTACAAAAAACGCCTTGCCAAGGGTTCCGAAGGGGATCTTGAGAGCCAAAGTCCGTAACTGCTCCCGAATAGACACATAAACGGGGGTGAGCGGGCGTTTTCGCCGTCCTGGTCATGT # Right flank : GGCGCTAGAAGGCCCTCACCTCCACCCCCGCCTGCTCCAGGGCCTCCCGCACCGCCCTCGCCACCTCGGGGGCGTTGGGGTTGTCCCCGTGGATGCAAAGCGTGTCGGCCCGCACCGCCACCTCTCCCCCGTCCAGGGCCTCCACCTTTCCCTCCAGCACCATGCGCAAGGCCCTCCGGGCCGCCTCCTCGGGGTCGGTGATCCAGGAGCCCGGCATGGAGCGGGGGGCGAGCTGGCCGCTTCGCAGGTAGGCCCTTTCGGGGAAGGCCTCGAGGACCACCCTGAGCCCCGCCTTCCGCGCCTCCTCCTCGTACACCGTCCCCGGAAGGACCACGAGGGGAAGCCCCGGGTCAAAGGCCTTCACCGCGAGGGCGATGGCCCTCGCCGTCTCCCGGTCGCGGCAGGCCTTGAGGTAGAGCGCCCCGTGGGGCTTGACGTGGTGGAGAGGAAGGCCCTCCGCCTTGAGGAAGGCGGAGAGGGCCCCGATCTGGTAGAGCACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCGTGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 94904-93990 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082324.1 Thermus thermophilus strain N-1 plasmid unnamed1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 94903 36 100.0 41 .................................... TGGGTTGTGGAAAGGGAGGCTGAACAGCACAACCTAATCCT 94826 36 100.0 37 .................................... GTTGTAGTCCACGTTGTCAATCTGGCACCGCTGCCAC 94753 36 100.0 36 .................................... AGCCGATACCCCTCTCTCCAGTCCAGGGGGGCCTCC 94681 36 100.0 36 .................................... GGCTTGGGAAGCCCCTCAGCCAGCTCGTCCACCAGC 94609 36 100.0 36 .................................... CGGGCCCAGCCCAGCTACTCCCCGGCGGCCCTCCTG 94537 36 100.0 39 .................................... TGAGTGATAAGCATCCTTATCGCCCTTTTGGTCTTTTGG 94462 36 100.0 36 .................................... CCTCCTCTTCACCACGTCCGCCCATGTGATGTACCC 94390 36 100.0 36 .................................... CCCACTACGGCCACCCTATCGCTATGCCCTATCCGC 94318 36 100.0 37 .................................... AGGAATGGGCGCTTCTACGCCCTCATCGCCGGACTCC 94245 36 100.0 36 .................................... CCATCCGGGGGGGTATGGGGTTGGGGGGTGAGCCCC 94173 36 100.0 40 .................................... GGCGAGTGCGTTGTTCGCGGGGTGAAGCCCCCCCTTGGGA 94097 36 97.2 36 ..........T......................... ATAGGATGAAGGCCGAAAGGAGGGTGAACAGCGATG 94025 36 83.3 0 ..........T...T.................GCCA | ========== ====== ====== ====== ==================================== ========================================= ================== 13 36 98.5 37 GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC # Left flank : GCCTACGATACCCCTGACGACCGTCGGCGGGCGCGGCTTGCCAAGCTGCTCAAGGGCTTTGGCGAAAGGCGGCAGTACTCCGTGTTTGAAGCCCGGTTGACCCGGGAGCAGTGGGCCCACCTCAAGGGCAAGCTGGAAGCCCTGGTCAACAAGGAGGAGGACGTTTTGGCGGTGTACTTCTTGCCCCCGGAGGCGGTGGGACGCACCTGGCGCATCGGCCACGAGGGGTTGAAGCGCCTCGAGGACCCCGACTTCGTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCTGTGCCAAACCGGGGGTTTTTGCTGTACAGAAGGCTGCTCTTTTGAATTGCATACTTGTTCTTTCCCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCTCCTCTTCCAGGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : CCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTGACGACCGGGATACTGTGCGGCGGGGATCAGGGGGCAAGATACATGTACCCGGTCGTCAAACCGGAGGCGTGAAAGGGGGCCTGTATTGCGAGGAGTTATCGTTCGCAATACTCATAAAATCCGACCGGAATACTTGACTTTTACCTCCCCCCTGGCTAGCCTGGCCTCCAGGAGGTGCGCCCGTGTTCGTGACGATGAACCGCATCCCCGTGCGGCCCGAGTACGCCGAGCAGTTTGAGGAGGCCTTCCGGCAGAGGGCCCGGCTCGTGGACCGGATGCCGGGGTTTATCCGCAACCTGGTCCTGAGGCCCAAGAACCCGGGGGACCCCTACGTCGTCATGACCCTCTGGGAGAGCGAGGAGGCCTTCCGGGCCTGGACAGAAAGCCCCGCCTTCAAGGAGGGGCACGCCCGGAGCGGCACCCTGCCCAAGGAGGCCTTCCTGGGGCCGAACAGGCTGGAGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 8 143228-142968 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082324.1 Thermus thermophilus strain N-1 plasmid unnamed1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 143227 36 100.0 40 .................................... ACCAGGGTGGGGGAAACCTTCTCCAAGGCCTTCTCCAAGG 143151 36 100.0 38 .................................... CGCTTAGGTCCGCCGTCAGGGCGGGCGACGATGGTCGC 143077 36 100.0 38 .................................... ATGAGCCCCTTTATCTCCCGGTCGTCGTTGACAACCGG 143003 36 91.7 0 ................................ATG. | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 97.9 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : TCAGGCCCAGGTCGTCGTGGTGGAGGATGAGGACCCGCCGCCCTCCAAGTCCGAGCCGCTCCAAAAGGTCCACGGAAAACCTCCTTTCCCCGCCTGGCTTCCATTCTAGCCCAGGTTCGCGCCTTCCCAAACACGCCCTTTTACCTTCGGGGCTAGGGGGTACTTGACACGACGGAACGGGCGTTTTTTACGCTTTCACAAAGCGAAGTAAGGTGGAAAAGGGGCTTTTTGGGGCAATTTTGGACGGGGTACACCGTTTCAGCGAGGTGCTATAATGCCTTTGTCCGGACCTCCGGACGGGGATCTTGAAAGCCGGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGTCCCTTCCTCTTGTGGCTTTCTATCGGTGTAAACCCTCAAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTCCC # Right flank : TTTGACCCTTCGCGGGCGTGTGGCCTCAAGAGGTACTCCGGGCTCCCGGGCCGGTATCGTGGGGAGCGAGGACCCGCCCGAAGGTGGACGGTGTGGCGGTCTTTGCGGGTTGACCTGAAGGCGAGGAAGGCCTCCTGGCAAGAGGTTCCGCCCGAGGAGGTGGCCTTCGGCGGGCGCTACCGTACGGGGCAGGCGCTTTGGGAGCGGGAAGCCTACCGCGTTGACCCCCTCTCCCCGGAAAACCCCCTGGTCTTCGTCGTGGGGGCTCTTCCCCCTCTGCCATCTCCCTGAGAGATGGCATTGTCTTTCCGCTATTGAATGACTATCATTCAAGTATGGAAAGAACTTTCCTGCCCCGCGCCGCCGGGCCCCTCCTGGAGCGGCTTCTAGTGGCCTGAGGGGGCTTTCCGCCCCGGTCCATCCCCAACCTTCATGTGCGTGGGTGCTGGGCCAAGCAGAAAGTCAAGTCGCGATTTTTGTGGGGTTCTCTGAACCCGGAC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //