Array 1 517659-517805 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMEL01000022.1 Streptomyces sp. Root1295 contig_7, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================ ================== 517659 23 100.0 30 ....................... AGTGTGCCGGGCCGTCCGGCGCTTCGTTCT 517712 23 100.0 48 ....................... GAGATGCAGGCCCGACGTGGCTGCCGGGCCGCCCCGCGCAACGGTTCC 517783 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ================================================ ================== 3 23 100.0 40 GTCCTCAAGCGCCGGACGGGCTG # Left flank : CGGGCAACAAGTCCGAGCTGGCGGTCGGCTACTCCACGCTGTACGGGGACGCGGTCGGGGCGTACGGGCCGATCAAGGACGTCTACAAGTCGTCGGTCTTCCGGCTGGCGAAGTGGCGCAACCGGGCCGCCGAGGAGCGGGGGCAGACTCCGCCGATCCCGGAGGCCTCGATCACGAAGCCGCCGAGCGCGGAGCTGCGGCCGGGGCAGGTCGACACGGACTCGCTGCCGGACTACGACGTCCTGGACGCGATCCTGGAGATGTACGTCGACCGGGACCAGGGTCTCGACGCCATCGTGGCGGCCGGGTTCGACGCGGAGCTGGTGGCGAAGACGCTGCGGATGGTGGACGCGGCCGAGTACAAGCGGCGGCAGTATCCGCCGGGGACGAAGATCTCGCCCAAGGGGTTCGGGAAGGACCGGCGGCTGCCGATCACGAACCGCTGGCGCGAGTCGTCGTAGCGGGTGGGCGGTTACCGGGGGCGTCCGGTGGCCGCCTTC # Right flank : GGAGTGGGTGTCGGAGTGGGGGCTCGACGGGCTTGTTGCCGTCGGTTCGCGGGGCGAGGTGCGGGGGCCTCCTGCCACCACGCGGGATTTCGGTGACGGGTCCCGGTCCAGGTGGCCCGCTGTCACCGCCACTGCCAGGCCCGCCACCGCGAGGACCGCGCCGACCAGGGCCGGGGACGTCCAGCCCCAGCCCGCCGCGATGGCCACGCCGCCCAGCCACGCGCCGCCCGCGTTGGCCAGGTTGAACGCGGAGTGGTTGGAGGCGGAGGCCAGCGTCGGGGCGTCCTTCGCCTTGTTCATCACCAGCATCTGGAGCGGCGTCGTCGTCATGAACCCCACGCCGCCCAGCAGCACCACCATCACCAGCGCCGCCCACGGGACGTGCACCGTGAACGGGAAGACCACCAGGACCACCGCGAGCGCGCCGAGCGATCCGTACAGGGTCGGGCGCAGCGCCCGGTCCGTGAGGGGGCCGGCGGCCAGGGCGCCCAGGGTCATCC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCAAGCGCCGGACGGGCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 578882-578014 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMEL01000021.1 Streptomyces sp. Root1295 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================== ================== 578881 28 79.3 40 AA.....T..........-......C..A AACGCATGAGGTATGGGTCCCTACCCTTCTCCGTCGTGGA A [578858] 578812 28 79.3 68 ..-.G.......T......G..CC..... GTGTTGCGCGACACACTGCGCGGCGCGTTGCCTCGACGTCCGTTCCTTGAAACGTGAAGAGCGTGATT G [578808] 578715 29 89.7 32 ..TG..C...................... GACGTCCTCAAGGAGGACTGGGCGAAGGGCAT TA [578705] 578652 29 100.0 32 ............................. CAGTACTGCACGTGCCGCATCCGCTTGATGAC 578591 29 96.6 32 .................T........... GTGTTCCGAAACGGCCCGTACGTCATGGGTTT 578530 29 100.0 32 ............................. CTGGGGCGTCCGTGGAAGACGGACAAGCTGCG 578469 29 96.6 32 .......T..................... CCGTGCTTCCGGATCCCGTGCCCCGACCCGGT 578408 29 100.0 32 ............................. ATGGAAAGCAAGGGGACCGCCGAGGTCGGCCT 578347 29 100.0 32 ............................. GACCTCCTGCCCACCGTCCAGGGGTTCGTGAC 578286 29 100.0 32 ............................. TACAGGACGGGGACGTTGCCATGCACCGCCAG 578225 29 96.6 32 .........................T... GCGCTCACGGACGCCCGCGCCGAGGCCGGGAA 578164 29 93.1 32 ..........T..............T... AACGACGTCATGGACGGCATCCGCACCGTCTC 578103 29 96.6 32 ..................A.......... ACGTGCTGGAGGGTGTCGGTGCCCCTGAGGCC 578042 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================================================== ================== 14 29 94.8 35 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : TCACGGGATTGGCCTTCCGAAGAACGCAGCAGAAGAAGCTGTCTCGCAATGCTTCGTCGCCTTGCTGCATCTTCGTAAAAACCGGCGCGGGGGAATTCGGACAACCGCAGGTACACCAAGTTCGTGGTCCCGTAGAGTACTTACTGCTGCACGCCTCTCTGGGAGGTGCGCGGAATCCCATTGGCTCTTCAGGCGACAGCACATCGAGATGAACGCACGACCCTCTCGAGGGATGTGGCGCAACCTCGACCGTGTCTGCGCTCTGGAGAAGCAGTGTCTCGGTTCCTGCGGAAGTTCGTTCTGCGACGCGAGGTCCTCCTCGAGGTATCGCGCGTGGTGGTCAGCACGGTACTCCGTGTCCTGATCAACGAACTCGTCAGCTGGCTCTTCTGAGCCAACGGCGACGGACCCCAGAGGTCCGTCGCCTCCTACATGGCGAGGATGTCCCGCTGGCTTCCGATGTTTCCCCATTACGGCTCTGTCTTCCCGCGCGTCCAGCA # Right flank : CCTAGAACAACGAACAGGCACACAGGGCAGAGGCGGTAGAGGGGAACGATGCTCTTCTCGAAGATGGACAGGGGTGGATGCCCTTTACGTTACGAGGCGGGCCCGTACTCGACGGTCGAGTCGGCGCACTGTTCGGCGAGGTCGAGGAGGGCAGCCTGCTCGGTCTGGTCCGCGTTGAGGTTCCAGCGGAGCTTCGTGGCGGTCCAGTCGACCAGGTACGTGCACGTCGCGGACTCGGCGGGCGGCATCCACTGGGCCGGGTCCTTATCGGCCTTCGACCGGTTGGTCTTCGCGGTCACCGCGACCAGCGACCGCTCGGCGTCGAGGTCGTTGGCGTAGGCCTCGCGGCGCTCGGGCGTCCAGTCGTGGGCGCCGACTGGCGGGGAGCGTCATTCCAGAGGTGCGGTATTCGGTGCTGCCCATGGGTCGTCGTACACGTGGCCGTTGTCGGGGGAGGTGGATTCGTGCTGCTTTGCCCGGGCTCCTCGTTCCTCCTCCCG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 588482-590154 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMEL01000021.1 Streptomyces sp. Root1295 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 588482 29 96.6 32 ..........................T.. TTCGACCCGCACTCCGGGAAAGTCCTGGAGGA 588543 29 93.1 32 ..A...............C.......... GAGTCCCCGGTCGATGAGCGGGTACGGAAGCG 588604 29 86.2 32 .AA.......T.T................ GGGGTCACCAGGCCGTGGTGGTTGCCGCCGGC 588665 29 96.6 32 .....T....................... GTGCGGTGAATGCGGCACTCAGTGGAGAGCAG 588726 29 100.0 32 ............................. GGGGACGCCAACGCGGCCACGCCCGGCGCGTC 588787 29 100.0 32 ............................. TTGTTCGGCCGCGTCCCCGGGTGCCGGACGTA 588848 29 96.6 32 ..A.......................... CCCAACCGCAAGGTCATCCGCCTCCAGCAGAT 588909 29 100.0 32 ............................. GTGACCCAGCTCGGCACCCCCGGCGCCGGCGT 588970 29 96.6 32 ................T............ GGGGCCCGGTGACCACCCAGCCCGAGCGCATC 589031 29 100.0 32 ............................. TCGCTCAAGGATGTGGGGATCACCCCGCCCGA 589092 29 100.0 32 ............................. CAGCCCTGGCAGGCGGCTCGGGGTACGTACAG 589153 29 100.0 32 ............................. ACGCCTAGTTGACCGCGACCATGCTGTGGAAG 589214 29 93.1 32 ..C.....................G.... ACGATGGCGGCTCGTGCGGCCCGGAGGGCGGG 589275 29 96.6 32 ..C.......................... CTCACCGGTACCGTGGACGTGCCCGTGGTCGG 589336 29 100.0 32 ............................. TCGACTTGCGCGGGCTAGTCGTCGCCCAGGAG 589397 29 96.6 32 ..T.......................... GCGCCGTCCGCGAGGCCCCAGACCTCGTGGAG 589458 29 100.0 32 ............................. TTGTACGCGACGTCGGAGTAGTTCTCCTTCCG 589519 29 100.0 32 ............................. GCGGTGATGGTGCCCGTGACGAACCCGTTGGC 589580 29 100.0 32 ............................. CACTTCTACGACAAGGTCCTCGTACCGCTGCG 589641 29 96.6 32 .....................A....... GCGCGACGTCTCCGCCGCGCCCTCGTCCGCCC 589702 29 96.6 32 C............................ TTGATCAGTTGTTGTTATCACTCCTTCGAGGG 589763 29 100.0 32 ............................. GTGACCCGGTACGCGTCCTGACGACGGCGTGA 589824 29 100.0 32 ............................. GTCCGGCAGGGGTTCCTCACCATGTCCCCGTC 589885 29 100.0 32 ............................. GGCGGTGATGATGCGGCTGCCGTGCTCGTGGC 589946 29 100.0 31 ............................. TCCATCGCGGGCGGTTGCCCGCCCTCCTCTT 590006 29 100.0 32 ............................. TGACGCAGTACACCGTCTCCCCAGTCCACAGG 590067 27 86.2 32 ........--.A........A........ CAGGAGGGCACCCGCCGACGTCGGCGGAGGCC 590126 29 93.1 0 .................A..........T | ========== ====== ====== ====== ============================= ================================ ================== 28 29 97.3 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGTGCCGTACACAGCGGCCCAGGAGCGTTGGTTCGGCAGGTGGCACACGCCGTCGATCTAGCGGGACGTCACGGTCTGGGTGAACAGGGGGACGTGAAATTGAGACCATCATCCAGATCGTCAATCCGTCGCTGCTCGACGACCTCCGCGAGCAGCAGAACACCGGGAGCCCTTCATGACCGACGCCTTGGTGGCCTTCCTCCGGGCGCGGCTCGACGAGCAGCTGGAGAAGGCCCGCTTCGCAAGCAGCACGATGGCTAAGGTCCCCGAGCGGTTCGGTGTGGATCCCGAGCAGGCCGCGGCGCATGCCCGGTTCTCCGTCGCCACCGCCGAGGTGCACCTCGCACTCCTGGAGGACACCGTCATCCCACACCTGGGGGCAGGTGGGGCAGCCGACTGGACTGCTGAGTACCAGCTGCGGCTCCTCGCCCCCCTACGTCGAGCACAAGGACTACCCGCACGACTAGCGCTCGACGGCAAGTCCCCTGCCAGGGTCTCCC # Right flank : TGAGCGCTTAGGGCGCCCCGCCCTCGCAGAAATCGGGGGAGCCGAAGGCATGTCTGGAGGCCGTAGAATCCACGATCGCGCGACACTGCCCATGAAGGAGCACACCGAGCCATGCGCACAGCCACAGCGGCGATCACCGCGTTATCCGCAACCCTACTGCTCACCGCCTGCGGCGGCAGCAGCCCTGAGTCGAAGGCCGAAACCAGCGCCACGGCCGCGCCCACTATCACCCAGGCCCCGGCGATCACTCCATACATGGACGGTTACGCCCACGGTCAGGAACGTCGCACCGACCCGGAGTTCAAGAGCACCGAGAAGGCCATCATCTTCGACCCGGTCACCGGGCAGCCCAAGGCGAATCCGAAGGACGACACCCTCACGGTTGCCCTGCGGGTCGCAAGCCACTGTCGTGACTGGTCACAGCAGGAGTACACCGACTCTTCCGACCAAGACGCCTACTTCGAAGGATGTCGCGCCGGCATCGACGACAGGCCGCCCAC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 590841-591599 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMEL01000021.1 Streptomyces sp. Root1295 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 590841 29 93.1 31 .......TT.................... CCGACCCCGCGGAGGAACCCGCCCGGCGTGA 590901 29 100.0 32 ............................. GCCAAGGGCACCCCCGTCACCTACGCCGGGGT 590962 29 93.1 32 .G...............A........... ACGCGGTCCTGGCCCAGCGCTCCCTCTACGCC 591023 29 96.6 32 .G........................... TCCTGCTGGGTCATGGAGTGCTGGGCCTTGGA 591084 29 100.0 32 ............................. TAGCCCTCGTAGCCGAGCCGGCCGATCACACC 591145 29 100.0 32 ............................. CCGACGCCCAGGAGCGGCTGGAGCAGGCCCTG 591206 29 93.1 32 ....G........C............... ACGTCCTTGATGATCCCGCCGATGTCGGCCAG 591267 27 93.1 32 ............--............... GCGTCCATCAGGTCGGCCGGACGCTGGCGCTC 591326 29 100.0 32 ............................. CACTCTGCGGCGACAGGGGCGAGAGCCCCACT 591387 29 96.6 32 .......T..................... AAGCAGTTCCTCAGCTTCGGGTCCGGGTCGGT 591448 29 100.0 32 ............................. TGGCGGACGGTCCCCTCGACGCGCACCACGGG 591509 29 100.0 32 ............................. ACGAACTCGGCGTCGCGCTCCTGAGAGTCGTC 591570 29 82.8 0 ...........A.......G.A..CT... | T [591573] ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.0 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : AGTCGAAGGCCGAAACCAGCGCCACGGCCGCGCCCACTATCACCCAGGCCCCGGCGATCACTCCATACATGGACGGTTACGCCCACGGTCAGGAACGTCGCACCGACCCGGAGTTCAAGAGCACCGAGAAGGCCATCATCTTCGACCCGGTCACCGGGCAGCCCAAGGCGAATCCGAAGGACGACACCCTCACGGTTGCCCTGCGGGTCGCAAGCCACTGTCGTGACTGGTCACAGCAGGAGTACACCGACTCTTCCGACCAAGACGCCTACTTCGAAGGATGTCGCGCCGGCATCGACGACAGGCCGCCCACCAAATCCTAACGAAGATGATGTAGCCGACGGCGAAATCGGCGCCATAAAGCACGTTCTGCCCGCTATGAGCACGTAACGCGGTCATGACCGGGCTTCTTGAGGCGTCTGAAGCAGATCAGGCAGCAGGCCAGGGAGACTTTGACGTTCGGGCGGCCCTTGCGCGAGGTGACAGGCCATCAGTTTATC # Right flank : GGCCGCTGGATCAACGGGGAACTGTGTCCTGGCGGTCGCCGGTAAGGACTTCGCTGCAGGCGAGCCGGGAGTGGTCGTCGACGGTGGAGTGGACGTAGTAGTAACCGATCACCGGCGAGGCGGGCACGCCCACGACCGGACCGATGCGGGCCGGTCCCAGCTTGCGGTCCCGACTCAGCGGCAGACCTGCGCCTCGACTTCGGCGGATGTGTCCGATGCGCGGTCCTGGCAAGCCAGCTGGAGCGGTCATGCAGGCTCTCGGCGAGGCGGCTGGGCGATCAGCCGGACGAACTGGGCACCCCGTCTCCCTCAGCAACTCCGCCTGGACCGGTTTCCGGCATCCGGGCGACAGTCAGCCATCATCGCCTGACTTCCAATCAGGAAAGTCAGCAAATGGTCAGCATCGATCCGATTGAACCCTGACACACAAGCTCGAACACGAGACTCGATGCGCCTTCCTTCACATCCAGCAGACCTTCGGACCCCGGCCACAGGGCAGA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6117-5966 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMEL01000024.1 Streptomyces sp. Root1295 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6116 29 100.0 32 ............................. ACGCGCGCCGAGGCCGTCGTCCACGCCCTGGC 6055 29 100.0 32 ............................. ATTTCGCGCAGGGCTCGGTCAAGCTGGTATTG 5994 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GAACTGCCGGTAGGCGTCGGGCAGGGCGATGTCGTGCTCGGCCTCGAACGCAGCGACGCGTGCCTCTGCCAGCTTCGGACCGGGACGGAACTCGTGTTGTTCTTCTCCGAAGGAGTGGCTGCGCAGCGGTTGGAACGGGATCGCGGCCAGCTTGCGACGCAGGCGGGGTATGCGGGGATCCATGGTGCATCTTCTCTCGTCCCTGTCACCCTATGGGTGGCTGTAGCCAGCTGGCCAGAAGAACTCTCTTCCCCAGGAGAGCGAAGCCGGCCCGGCCGAGCATCTGGCGCTCGATCAGCTTCCCGAGGTCCCGCCCGCCCGAAAAACGTCACTCCGCGTGATGGTTCACGGAATGTGTGCCAGAACCGCTTGAAGTGAACGAAGCCAGCTGGGGATAGCCTTGTCGTCACGGCAGGAGAGAGCTGATGGTTGATATGTCGGATTCGGTGAAAGTGCTCGAGAATCACGCTTTCCCGCTGTAACGCTGCAGGTCAGGAAGT # Right flank : GTTAGGGGGCCGCCAGACGTGCCCGCTCTGCTCATACAGCTTCGTCAGCGCCGCAAATTCGCCTCGGCGGTGGGGGCTTTTCGTCATGCCCGGAGTCAGCCGAGGGAGTCGATGGCCTTCACGATCAGGGCGCGCGCCGCCGCGCCGTACACGGCCATGCCGCGCAGTTGCTCGAACGCCTTGAGGTAGAGACCGATCTCACCGGGCTGGGTGATGTTGACCTGCGCGGAGAGCAGTTCGACCGAGACGAGGGTGTCGTCGTAGACGTGGAAGGTCTCCTGCGGCCATAGCACCCGTTCCCGGGCGGCCATAGGAATGATGCCCAGCGACACGGTCGGCAGCGCCCCGACGGTCAGCAGGTGGCCGAGCTGCGCGGCTACCGCGTCGGCCGAACCGAGCTGGAAGTACAGCACCGACTCCTCGATGAGAAGCACGACTCGGTGCCCCGGCTCCCGGATGATCCGGGACCTCTCGACCCGCGCCGCAGCCGCCTCGGGCCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 37157-38919 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMEL01000024.1 Streptomyces sp. Root1295 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================================================== ================== 37157 29 100.0 32 ............................. CGGTACGTGAACAAGACGCCGCGCAGGAAGTT 37218 29 100.0 32 ............................. CACCTAAAGTGTCCGAGCCGAGGGTGGCCGTC 37279 29 96.6 32 ............................A CAGGAAGGGCCCCCGGATCACCAGGGGCCCCA 37340 29 100.0 32 ............................. TGGCCGTACTGCGCACCAACGACCTGGGGAAG 37401 29 100.0 32 ............................. GATGCACACGTACGCGCACATCGTTTCGTGGA 37462 29 100.0 32 ............................. GGCGGCTGCATGGGGGCGAGGTCCAGCACGAA 37523 29 96.6 32 ............................A ACCCTCATCAGCGGGCGGGTCCGGACCTCGGT 37584 29 100.0 32 ............................. AACATCATCCCGGGCGCCGAGGCCGCCGGGAT 37645 29 100.0 32 ............................. CGTTCGATGCCACGCCGGGGCCGCTGACAGAG 37706 29 96.6 32 ........A.................... GTCGCGGGCGAGTCCGCCGTCGTCTTCCGGCT 37767 29 96.6 32 ............................T GAGTCGGTCTCGAAGTTCCACGTGGTCAGTCA 37828 29 100.0 32 ............................. GCGCACGCGTGTCGCGCACGCGCGAGGAGACG 37889 29 100.0 32 ............................. GGGTTGCCGATCAGGTCGCTCAACAGGTTGCG 37950 29 100.0 32 ............................. GCCCGCCCCGAGCGCCCGGCCGGACCGGTCCG 38011 29 100.0 32 ............................. GATCGGCGGATCCGGCTCCCACACCCTGACGA 38072 29 96.6 32 ........A.................... GGCACGGCAGCGTGCTCCGCTCCGTCGTACGC 38133 29 100.0 32 ............................. GTGCCCACGGCACGTCGCGGTTGTGGGTCTCC 38194 29 100.0 32 ............................. CGTCCGTCGCCTCCGCCTCCGCGCTCCACCCG 38255 29 100.0 32 ............................. AAGCTGATCGCGGCGGGCCAGTCCCGCCTCAA 38316 29 93.1 32 ..............G..A........... TCGGCTCAGGGCATCATGCGCCGGCCCGACTG 38377 29 100.0 32 ............................. ACCCCGTCCATGCTGGGCTGGTCGACGTCGTT 38438 29 96.6 32 .......T..................... ACGGGCCGGGTCCGGCACCCGGTGTTCGGGAA 38499 29 100.0 32 ............................. GTCGAGACCACGGTCTGACGTCAGCTCACCGA 38560 29 96.6 32 ............................G AAGTCCGGCACGGACGTCGAGGCCGAGGGCGA 38621 29 93.1 31 ...........G.............C... GTCTGCAATCCCGGATGGTTGTACGGACCGA 38681 29 82.8 181 .AA....A...G................A CGGCGGGGTCCGGAGCCGGAGAGCGCGGCCGTCTGCTCGCTTACGGGGCTCAAGTAGTAGCAATTCTCGCTGATTGCGCACTGAAGGTGAGCGGAAGTGAGCAGGATGCGCCTAATGGTGGGCAAGGTGGGCTTCTGCAACACGGATGGCATAGATGATCAGTTACATCTCTCACTACTCA 38891 29 69.0 0 A..G....T...TAGC.A......A.... | ========== ====== ====== ====== ============================= ===================================================================================================================================================================================== ================== 27 29 96.8 38 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TTGCCTTCCCGATGTCATGCACCCCAGACAGCCACACCACCAGTTGCCGGGCATCCTCCACCCCGCCGGGCAACGGCCCCGCGATCACATCCCGAACCTGCTCAGGGAGCCACTCGTCCCACAACAGCCCCGCCACAGCGGCGCTGTCCTCCATGTGCCGCCACAACGGCAGCCAACCCTCCGTATCCCGGTCGTGCTTCGCCCACACTCGCCGAACAGCACCCTGCAGCCGCCCCCCAAGGCCCGAACAGGCCCCACCCTCATCAGCCATGTCAGATGAATACAGGCAAACAACTGAACAACACGCCCTGATCAGAAAATCTGATGCTTTTCGATCGACAACATCACTTCAACCGATAACTCGCCGTAAGATCCGCCCGACGTAATCCGCGACCCAGCACAACAGGCAACAGGAAGATGCCGAAATAACCTATATGTCGAAATCGGTGAAAGTGTGTGAGATCTCGGCCCTCCCGCTGTAACGCTGCAGGTCAGGAAGT # Right flank : CACGGAGGGCATCGCAAGTGCTTGCTCCCTGCGCACGCAGGGGTTTCCGAAGTTCAGCCGTTCCTCGACAGCCCGACATCATCAGCAAGCATGCGTGGACGCGCCACAGGCAGGCATGATGCTGAGTAGGTCAGTCGCTGAGATGGACGGAAGCAGGCTTCATGACGAGTGCACCGGACTACAGCCAAGGCGTTGATGCCGAACGCGCGTTGAAGTTCGCTGTTCAGCGCATCCGTGGAGACCGTGTCCAAATCATCGAGGGGATCATCGAGCCTGTGTCACCGACCTGGGATCACGAGCGCGCTGCGAAGCTCGTCCGTCGGCAGATCGAAGATCGGGTAGATGATCTTGGGTGTGTCGAAGGCTCTGGAAACTTGGATCTCCCGGGGTCGTCCAACTGGTACGTCCCAGACATCGCCGTGGTCCCCGAGGACCTTGCGAGAGGCGGAGGCGCACTGCTCCCGGACCAGACCCTGCTGATCGTAGAGGTGACTTCAGAG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.52, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 39771-40530 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMEL01000024.1 Streptomyces sp. Root1295 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39771 29 86.2 32 .........A.C........A....T... ACCCTTGATCAGGAACCGGAGCCGGGCCCACG 39832 29 82.8 32 .........A.G.T.......C...T... GACCGGATGGTCCAGGCCGAGCGGACCTTCGT 39893 29 86.2 31 ...........G......A......T..G ACGGCGCTGGCGGCACCGACGGCATGCCCGA 39953 29 93.1 32 .....A...................T... AACCGCAACCCGGAGCGCGACGAGACCGACCG 40014 29 86.2 32 ..C..........G...A.......T... AGCTCCGCGATCTTCGCGGCCACAACCGGGTC 40075 28 82.8 31 T..........G.GT..-........... CGCAGTACGTCCAGTGCTCCGCGTGCAGGAC T [40099] 40135 29 100.0 32 ............................. GAACCGCAGCTGCACCCGGCCAGCGTCGCCGG 40196 29 100.0 32 ............................. AAGGTCGGCCGCCGCCACCAGCTCGCCCGACA 40257 29 100.0 32 ............................. TTGCACGCATGCATGCTCACCTTGCTTGCATG 40318 29 100.0 32 ............................. GGTTATGACGCCGCCAGCCTCAAGGCCACCGG 40379 29 100.0 32 ............................. ATGGTTGACCCGTCGGTACCCAGCGCAGAGAG 40440 29 93.1 32 ................T........T... GAGACGCTGTGGCACATCCCGCCGGGCGAGTT 40501 29 96.6 0 ...........G................. | T [40526] ========== ====== ====== ====== ============================= ================================ ================== 13 29 92.8 32 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : GTGTGTCGAAGGCTCTGGAAACTTGGATCTCCCGGGGTCGTCCAACTGGTACGTCCCAGACATCGCCGTGGTCCCCGAGGACCTTGCGAGAGGCGGAGGCGCACTGCTCCCGGACCAGACCCTGCTGATCGTAGAGGTGACTTCAGAGTCAAACGCCGAGACCGATCGAGTAGTGAAACGCCGCCGGTACGCCGAGTACGGTGCCCCGCTCTATCTCCTCGTGGATCGGATGGAGGGGAGCCTGACCCTGTTCTCGGAGCCGGGCCGGCTCGGCTACACCCGAGTCGACGGACCACACCCCTTCGGCACCACAGTGCACCTGCCAGCGCCATTCGGCCTTGACCTCGACACGGCCGGCCTCGCGTAGCAGTCAGATCTGGCAGTCGGGGCTCCGCATGTACAGAGGGATGGCCGCCTCCCGGCACAGGGCAGCCGGGCCACCCTGCCTTCGGGTGCGGGGCTACATCCCACTTCCGGATATCCGGAAGTGACTCATCGAT # Right flank : CGCGCCGGGCGGGGGGTCCTCGATGCGAAGGCCCCCCTCCTCGACCTCGAAACCACGGCGGACATCCCCACCGCCCCCTACCCCGGACTCGTCACCCTCGGAACGACGGAGAACGGGGACCTGCTGCTCACCGACCTCCTGCACACCGGGGCACTGCTCCTCGACGGCACCGCCGACGACGTCCTCGCCGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCGAGATCATGACCGTCGGACTCGGGACCCGCCTCGCGACGCTGCTGCCCCGCGGCCGGGTCCGGCCGCTGCCCCATGTGTCCGCGTCGTCGCCGACCTCGGAGCGCTGCTCCTGGAGGTCCACCAGCAGACCGGCACCACGGACATGCCCGAACCGCTGCCGTGGATCCTGGTCTGCGCCGGAGACGTCGACGCCGAGCAGACCTGGCAGCTCGCCGACGCCGTCTCGGCCGCCCGGGACCTGCTCATCGCGATCGTCCTGCCCGCCA # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 43002-43639 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMEL01000024.1 Streptomyces sp. Root1295 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43002 29 86.2 32 GGC.........................T ATGGCTCGGATCCGGGCCCTGGAAACACTGGT G [43004] 43064 29 100.0 32 ............................. GAGGGCATTGTTCCTCTCTGGAACCGCGTAGC 43125 29 100.0 32 ............................. GGCAAGGTCACGGCCCGAGGTGAAGAGCAGGC 43186 29 100.0 32 ............................. TCGTCGGTGATCCCGGCCCCGACGAACCCGCT 43247 29 100.0 32 ............................. GCGCGGGGGCATCCGCACTTGACCTTGACCCG 43308 29 100.0 32 ............................. TCCCACCGCATTCAGTTCCATACCAGCGCCAG 43369 29 100.0 32 ............................. CAGGAGTACCAGCTCACGATCGATACTCTCGG 43430 29 86.2 31 .........A...GT.............T CGCCCTCGATCAGCGTGGCGTCGATGATGAT 43490 28 82.8 32 .......TT...-.....A.....T.... GACGAGTGGATCGGGCAACATGGGTTCAGTGA 43550 29 93.1 32 ...........A.T............... GAAGCCGGGTTCGTCGCCTCGTGGAACGCGCC 43611 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.0 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GTCCGGGACCGGTAGCCGCTTCTCCAGTTCCCACCGCTTGATGTTCTCCCAGTCGAACCACCGGCCGCCCTGGGCCTGTTGAACGACCTTGGCCTGCTGATCTCGGGTGCGTCCGGCGCGTTCGCGGATCGATCGAAGTAAGGCGCCGATGCCGTCCGGGGCCACCATGACACTTTCCCTCCGTCGCCGTCGGGGGTGGCCCTCATCCTGGCCCCCCGGAGCGGCCCCCCGCCGGGAAACGCACCCCTTCGTGGCCCCTCATTCCTTGTGTTCCCCGGCAGTTCAATGGGCGAACGCCACCGACCCCTCGGCTCGTCGCCGGAACGGTCTCGGCGGCGGGCCGGGGTTCCACCGGCCGCACGGCGCCACCCGGACAGACAGGCCAACTGGAGGGGATCATGGACACCGAAGCACCCGTGGATCGGCTGCCGGCTCGCGTCGCCTGGGAGGAGACGGGAACGGCCATCGTTCCCGGTGTCCTTGAGTCGGACCGCTTCAAG # Right flank : CACCCGACCGAGCCCGAGTACGAACCTGCCCTGCTCCTTGGCCGAGCCGCCGCAGGCCCGCTCACGAACTCCTCTCCGCACCATGGAGTGGGAGCCCGGTGGATTCCCGCGTCCTACAGGTCGAGTACCGCCCACATCCTGCGGCCGTCTTCTGCGGTGTCCGTTCCGCACGAGACCGCGCCCAGGCTGGTCAGTTCTGCCAGGACGGCTGTGCCCGCGACCGCGAGACCTGGCCGGTGGGACAGGGCGACGATCAGCGCCTGCCGGTTCTGGTCCGCGAGGTGCAGGGACACCCTTCGGCCGCCATCGGCGACCGCAGCCCGCACCAACGCCTCCGTCAGGTCACCCGCAGCTTGGTCGGCCTCTCGGTATCCCCAATCGTGCAGCTGGCGCACGACATTGGTGCAGGCCTTCTTCGGCGACCAGGCAGCTGCCTCGAGCGACCAGTTCGCCGACCGCCGGTTCCGTACCAGCATCCGAGCCCGCGCCGTTGCTTCCAG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 44412-46636 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMEL01000024.1 Streptomyces sp. Root1295 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 44412 29 100.0 32 ............................. GCGCCGACCTGGAGGCCGGTCGGATCGAACTG 44473 29 100.0 32 ............................. GGGACGTAGCCCTCCCCCATCGTTTCGGGCTC 44534 29 100.0 32 ............................. GACGGGCCCGCGCTCGCGGCCAGGCTCGCCCG 44595 29 100.0 32 ............................. GTCAACTTGAAGCTCGTGACGGGGAGCTTCAG 44656 29 100.0 32 ............................. GTTCCGCTCAGCGTCCGCACCTCTGCGCCGGC 44717 29 100.0 32 ............................. CACGCCATGAGCGCGGCGAGGAGCGCGCCGCC 44778 29 100.0 32 ............................. GCGGCCTGGCTGGCGGCGTTCGGCTCGGTGTG 44839 29 100.0 32 ............................. CAGGCGGACAGCCGGAGGCTGACCCGGGCGCG 44900 29 100.0 32 ............................. ACCAGTCAGAAATGCGCACGGCCCCGGTGTCT 44961 29 100.0 32 ............................. GACGACGCCCAGGAGCGCGAGTGGTCGGAGGA 45022 29 100.0 32 ............................. GGTGCACGGCGGTTGGTGTTCCTGGTGCGGAC 45083 29 100.0 32 ............................. GACGCCAAGCTCAAGGACTCCGAGGGCCGGAT 45144 29 100.0 32 ............................. GCGGACATCTTCGGCCGGCTGACCGCCGGGAA 45205 29 100.0 32 ............................. TCCGCTTGCCCCTGCTGGACATCCGATGGCCA 45266 29 100.0 32 ............................. GCGAGGACGGCGGCGCGAATGCGGGCGGATGC 45327 29 100.0 32 ............................. GTTCCGCCGGTCGGTGCCCCGGTGACGGTGAG 45388 29 100.0 32 ............................. CAGGCACATCAGAGCGCCGGGCCAGATGCCTG 45449 29 100.0 32 ............................. AACAGCAGCGCCGCGAGCTTGATCGTGGGCGG 45510 29 100.0 32 ............................. TGCTTGACCATCCGGACGTCGTCGGCCAGCTC 45571 29 100.0 32 ............................. ACCGGGGCTGCAAGGGCCGTTCCACGTGAAGG 45632 29 100.0 32 ............................. GGCGGCGACTGGATCGGCACCGTCATCCGGCA 45693 29 100.0 32 ............................. GCCCCCCAGGCGGATCATCGACGATGCCATAT 45754 29 96.6 32 ............................G AAGAGCCGCATCGAGATCACCCCGGACACCGG 45815 29 100.0 32 ............................. GCCATCTCGAAATCACGGTCGAGCGTGGGCAA 45876 29 100.0 32 ............................. TGACCCACATCGGGACAACCGAGAACGGACGG 45937 29 100.0 34 ............................. GAGGCCCGGTCCCAGATCCTCACGACGTGGGCAA 46000 29 96.6 32 ...............A............. GAGAAGGACCGCGGGGAGGACGTCCTGGCGGT 46061 29 100.0 32 ............................. GGGCTGCTGGCGATGACCAGCATGCGGCTGAT 46122 29 100.0 32 ............................. ATCGACGTCCGGCGCTGGCAGGTCGAGCAGGA 46183 29 100.0 32 ............................. TGACCATTCCGCCCACGTGGGTGGCGGACCTC 46244 29 100.0 32 ............................. GTGTCGCCGGGCGCCTCGGTCGGGCTGATCTT 46305 29 100.0 32 ............................. CAGCCGCCGCCCTGGACCGGGATGTCGATGAG 46366 29 89.7 32 ...........G.GT.............. TCGGCTGGGCCGACGTTCCGACGCGCGGCTCA 46427 29 89.7 32 ...........G.GT.............. GCCACGGACCTCCGGGGCAACGCCAACGCGAC 46488 29 89.7 32 ...........G.GT.............. AGCAACGGTGCGGCGCAGTGGCTGCTGCGGCA 46549 28 89.7 32 ..............A........-.C... AGGGCGTCCAGGCCACCCTTCTCGGCGTCACG 46609 28 75.9 0 ....-.....GG.A.AG.......A.... | ========== ====== ====== ====== ============================= ================================== ================== 37 29 98.1 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TCCGCGAGGTGCAGGGACACCCTTCGGCCGCCATCGGCGACCGCAGCCCGCACCAACGCCTCCGTCAGGTCACCCGCAGCTTGGTCGGCCTCTCGGTATCCCCAATCGTGCAGCTGGCGCACGACATTGGTGCAGGCCTTCTTCGGCGACCAGGCAGCTGCCTCGAGCGACCAGTTCGCCGACCGCCGGTTCCGTACCAGCATCCGAGCCCGCGCCGTTGCTTCCAGGCTCGTTTCAGGACGCGGCGGCTGTACAGGTCGCTTCGGCGGTGGCGGAGTCTTCGGCGGGTAGTCCGGTGTGTGATCCAGCACGAGTGCTCCCAGGATCGGCGCGGGTACCCATCGTAGAGGCGCGATTACCTGGCGGGACCAGAACTGTTCGCCGGGTGCTGGGGATAGCCTGGTCGTCACGGCAGGAGAAAGCTGATGGTCGATATGTCGGATTCGGTGAAAGTGCTCGAGAATCACGCTTTCCCGCTCTAACGCTGCAGGTCAGGAAGT # Right flank : CCAGTCGCGGCGTGGGAGCGGCGGCTTAGCTTCTGCTTCGTGCGGCGACGGGATCCGTGCGACGCCCGGACATCCTCGCGCTTTTGCGGGGTACGCGGATGGCATACCGCTCGGAGGAGGAATCATGGCCGGACTGATCGCCCGTCTCACGCAGTTCTCCCGCAGCCCTCAAGGGCGGCGGACCTTTGCGTCGGCCCGGCGTGCCGCGGCCGACCCGGGTAAGCGCGCCCAGGCTCGCAGCCTGTTCGGCCGGCTGCGTGGACGCAGGTGACCTCGGCGCTTCGGCGGACGACCGGAGGCACCTGCTGACGTTGCTCATCGGAGTCTGAGATGAGGGGCCTTGGGCGGAAGTCGAGCGCTACTCTGGGCATCCGGCGTGTTGGAGGAGAGGCATATGGCGCACGAGGACTGGACAGTGGACCGGTTGCACGTCGCCCTGCCCCACTCGGCTTCCCGGCAGCAGCTGCTCCAGGACGTGAACCTCACACCGCTCGAAGAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 47698-48878 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMEL01000024.1 Streptomyces sp. Root1295 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================== ================== 47698 29 100.0 32 ............................. CATAGAGTTGCCGCCTGGCGGCCTTTCACTCA 47759 29 100.0 32 ............................. GGGCGTCGGTTGAGTGGGAGGGGAAACGCACT 47820 29 100.0 32 ............................. TTGCTCGTGTTGCTCGTGCCCGGGACCGTCGA 47881 29 100.0 32 ............................. GCGAGGCCCGGCCTCCCGCCTGGCAGCTACGG 47942 29 100.0 32 ............................. GACATGATGGAGCTCCTGCTCCGAGACATCAG 48003 29 96.6 32 .............C............... GCGGCGGGCTCACCCTCATCGCCACACGCATC 48064 29 93.1 33 ...........G..T.............. GGCCCCCGTCGCCACAACGAGGACCGTTCACCT 48126 29 93.1 32 ...........G..T.............. GCCCAGGTCTCGTCGGTGATGTGCAGGACGGC 48187 29 89.7 32 ...........G..T..........C... ATGTCTCCGTCGGCACCGAGGAGGGGGCTCGG 48248 29 86.2 32 ......T.T..G.C............... GGCCGGCCGATCGTCCGCGAGTTGTACGGCGA 48309 29 82.8 149 ..........TG.CT............T. GCCCTCGTTCCCCGTGGTGTCGATGGTGATCTGCTCCTTGCGCGGCAGGGACCCCGACGAGTGGATCGGGCAACATGGTTTCAGTGATTACTCCTTCGCGAACATGAGGATGGCCCCGGTCCGTCGCCATCGACACCTGAAGGCCGTCG C [48334] 48488 29 93.1 32 ...........G.C............... GAACTCCGGGACGGGTGGCTGGGCACCGTCCA 48549 29 89.7 32 ...........G..T........A..... AACGGCCTGGTGGACACCGCCACCCGGAACGG 48610 29 86.2 32 ...........G.CG.............T CGGTCTGTCCGGCCCGCAGCCCCGAGCCTCAC 48671 28 82.8 30 .....-......TC........G..C... TGACGCAGCCACCACCTACGTGCTGTCGTC 48729 29 72.4 32 .A....G....G.C.T..AC.T....... GTCTCCTCTCTCGTCGAGGCCGCGCGGATCAG 48790 29 82.8 32 A....T...A.T.............C... ACGTCGGTGTAGGTGTGGGACGGGCCGGTGTG 48851 28 72.4 0 .......G...-....A.CATG.....T. | ========== ====== ====== ====== ============================= ===================================================================================================================================================== ================== 18 29 90.1 39 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : ATCGAGACAGCCCGCCGCACAGCACTTGGCGGTGCTCTGCCCGTCGAACTGGAAACGCGGGACGTCACGGCGGACGTGATGCGGGACGCCGAACCGCGCCAGGGGCACGGGGCCGGCCGCGGCCGGGGCGCCGCGTGACCTATCGGCTCCACTTCCCTGGGGACGTGTTCGACACGTACAAGCAGCTGCCCGAGCTTGCCCGGCGGGATCTCGCGCTCGCCCTGGTCGACGCCCAGGAAGACCCTCTCGCGAGCTCCGAACCGTACGGACAGGACGACGGCATCATCCGCACCGTCGCCCAGGGACACGTCACCGCCGTGCTCCTCCTCGGCCAGGACACGAGGACCATCACCGTCCTCACCATCGCCTACGCCGGAACCACCTGACCTGCGGTCAGTGACACAGCGAAGGCTCAAGGTTGAGGAATGGTTGATTTGTCGGAATCAGGGAAAGTGCTCGAGAATCGCACCCACTCCTTGTAAAGCTGCAGTTCAAGAAGT # Right flank : CTCCGTGGTCGCGGACAGCCGGCCAACGTGCTGTTCCCCGCAGCCGCGGTTGGCGTCCGTGCTGTCGTCGCGGTCGAGGTGCTCCGCCACGATCCGCGGGCTATCGGCTCGATGCCACGGCATCAGCCACACGGAGGCGGAGCCAACTTCATGACCGATATGTCGCATTCGGTGAAAGTGCTCGAGAAGTGCACCAACCCGCTGTAAAACTGCAGGTCAAGAAGTCTGCTCCCCGCGCGTGCGGGGATGGTCCCGCCGGTTCGAGCTTGGCCCCGTTGCGGGCGTACTGCTCCCCGCACCCGCGGGGATGGTCCCGAGCTCGCCGCCGCCTTCGGCATTCTCAACCCTGCTCCCCGCACGCGCGGGGATGGTCCCTTCTGTGACACGGCCACTCTCCGTGACTGCGGGTCACCGATTAGATCTCGAACAGGGCGTCCTCTTGTGGCGGGATCGGAGGGTCAAGGACGTCGCGGAGGCGGGTGATGTCCTGGCGCCACTTC # Questionable array : NO Score: 4.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.62, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-35] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //