Array 1 4538517-4534043 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913013.1 Rudanella lutea DSM 19387 RudluDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 4538516 37 100.0 37 ..................................... TCCTCAGGCTTGAGGTTTTCTAAGTAGTGGTCCTCTA 4538442 37 100.0 36 ..................................... CCTCACCGACCATCAGGAACTCTACCGGGCGATTTT 4538369 37 100.0 36 ..................................... TAAGACGTTCGTATGTAGAGCGTTATTTGCTCGACT 4538296 37 100.0 39 ..................................... TTCGAGTGTAGCGAACACGTACCAACCCGGCCCCGATGC 4538220 37 100.0 38 ..................................... AAAACAGGCTGAATTGTTTCGAAACACCCATCAGCACC 4538145 37 100.0 35 ..................................... CTCAATTATCAGCCTCTTGTTTTGCTTTTTTGTCA 4538073 37 100.0 36 ..................................... GTCTAACGTCACATTGCCCGTTTTCCCATTGACTGC 4538000 37 100.0 40 ..................................... GGGTCTGCATTACGTACAACCTGATACGTTTTACCCTCAA 4537923 37 100.0 36 ..................................... AAGCAGACGCTATCGAATGGATTGGAGAAGCTCTTG 4537850 37 100.0 44 ..................................... CATCCAGATGAGCACCTAACAGCTTACGTGAAGGACGAGAAGCA 4537769 37 100.0 37 ..................................... TCACCGGGAGCCAGCTTTACCCGTACCGGTATATACG 4537695 37 100.0 37 ..................................... TAAGTGTCCTGTTTGCCCCGCTCATAGCCAGCATCAT 4537621 37 100.0 36 ..................................... CGGAGCTACGCCATTCATGGATTTCATGAAGTGGCG 4537548 37 100.0 36 ..................................... AAAAACCGATCACGCAAGGCGCCTGTTTCGACCGGG 4537475 37 100.0 36 ..................................... TATACAGCACGGAGAACGAAAAAAGTGTGCCTCTAT 4537402 37 100.0 37 ..................................... ACCATGTACACGTACATCGAGATTATCGACCAATCCG 4537328 37 100.0 36 ..................................... TTAAGCCGCCCGTGAGCGGACTGATAGAGGTCGGAT 4537255 37 100.0 39 ..................................... AACATTGGAAAGAGTATTGGATAGACAAATACTCCGGTT 4537179 37 100.0 37 ..................................... CAGGTCGATGTTCTCAAGGATAGCTTCAAGAATATCA 4537105 37 100.0 36 ..................................... CTGGATATTCGCGTAAACGGGAAAATTAGCCGGTCA 4537032 37 100.0 37 ..................................... GCGGCTGGTGGCAAACTCTGATCGTAGCGGACAGAGG 4536958 37 100.0 36 ..................................... GGCTACCGGGAGGCCCAGCAATACGCCCGCAACCGT 4536885 37 100.0 38 ..................................... TCGGCAGCCGAACAAGGCAACCTATAACCCACAGAAAA 4536810 37 100.0 37 ..................................... GTACACCAAACCATTGATACAACCTACCCGATTTCTG 4536736 37 100.0 36 ..................................... ACTGAACGCTCACCGAGATTTCCGCAGCCGGTCTTC 4536663 37 100.0 36 ..................................... TCCGCGACGAGCGGTTCAAGAAGCTGGTCAAGTCGA 4536590 37 100.0 36 ..................................... TGCGGTAATAAAGCTAAAGGTGCTGAAACCTTGCAA 4536517 37 100.0 36 ..................................... AGATTGAGCAGTATTTCGAGACAATTGAAATGAGCC 4536444 37 100.0 37 ..................................... CCGGACAGGAACGGCTAAAGCAACAGGCCGAAGCAAG 4536370 37 100.0 36 ..................................... CCGTACTGCCAGATAACTACATCACCGACTTGCGGG 4536297 37 100.0 37 ..................................... TAGACAGCAATCAGGGTAAAAAAATCTATTACGTTCA 4536223 37 100.0 36 ..................................... CCCAATCAACCCCCAAATCATCGAACCTCATGCGTC 4536150 37 100.0 37 ..................................... AAACGACGTTTCAGCTGGTGGATTTTCCCGGTGCAGT 4536076 37 100.0 38 ..................................... CCGTAGATGCGGGTTTCGGCCTCTTCCTCGCCCAAATC 4536001 37 100.0 37 ..................................... CCTGACCATTACGCAGCTGGGGGCATCGCTGGGTTTT 4535927 37 100.0 37 ..................................... GTAGCCTAATCGAAATGGCCACCGCACCCGGCACCTA 4535853 37 100.0 38 ..................................... TCTACGGCCGAGGTAGCCGACCCAAACAGACCCGGCTC 4535778 37 100.0 36 ..................................... AGTTGCTTACAGGCATCCTCTACGGCTTCGTTGTCT 4535705 37 100.0 37 ..................................... GTCGGCCGTGCGGCTTGCCCATAAAGGCGACTGTCGG 4535631 37 100.0 38 ..................................... GCGAATACATCAAAATGACGGGTGTACGCGCTATTCTA 4535556 37 100.0 37 ..................................... TAACCCTTGCCGCCAGCCACATCGAACACGATGGCGT 4535482 37 97.3 37 ...................A................. AACTGCTCAATGTCCTGTGCTGAAACAGGTCGCAATT 4535408 37 100.0 35 ..................................... CTAATGTACTCAATCTATCGCGGTTTCCATCTGGA 4535336 37 100.0 36 ..................................... CGCCCCCAGGTGGCGGCACGGCGGCCCCGGTAACAG 4535263 37 100.0 37 ..................................... GGTCTGGGTTTCCGAAGAACTCCAAGCAACAGCTCAA 4535189 37 100.0 37 ..................................... TAGCGCTCCGATGTAGGCGCGCTCGCGTTCAATCATG 4535115 37 100.0 38 ..................................... CAAAACGTATAACTTTGCTTATCAAAGTGATGCACAAC 4535040 37 97.3 38 .......T............................. GGTGAGGCCAGTAGTCCCTCAGCCGCTTCGAGTAGCGT 4534965 37 100.0 37 ..................................... GTGGCCAGACAATCGCTTTCATTGCGAATCAGGCCAA 4534891 37 97.3 35 .....................C............... ACTGTCAGCAGCCCCCCAAGCACGCGCTAAATCGA 4534819 37 100.0 36 ..................................... AAAAGGAGCGGGGCAAACTGCTGGCCTCATTGCCTG 4534746 37 100.0 36 ..................................... TCGCGGTGGTAGGGTAGTTTGGCCCCGTTCGGTATC 4534673 37 100.0 49 ..................................... TTGCACTGGGCACCGCTGATCTGAACGCGTTCAAAACAGCGGGTTCGTG 4534587 37 100.0 36 ..................................... GGGACTATACCCATACCCGACAGTGCAGTTGATCGG 4534514 37 100.0 36 ..................................... ATGATGGTAGGGGGTGGTCAGCCTTTACGAAGGTTC 4534441 32 86.5 37 ...................-----............. TACCGTTGGCTCCGAGGTAATAGATTCGTTGGCAGAG 4534372 37 91.9 36 ........C.T............G............. GTAGCGGGGGTGTAGCGGAGGGTACACCTGCAGTTG 4534299 37 94.6 35 ........C.T.......................... ATCGTATCGACACTCCAACCCGCATCTCTGGCCCG 4534227 37 89.2 35 ........C.T.......T................G. CCGACAATGTGGTGATTAACCAGCCCCTGTCCCCC 4534155 37 94.6 39 ........C...........................T GTATTCGGCATCCAGACTGCAATGACGCGAGTCTGGGCA 4534079 37 94.6 0 ........C.........T.................. | ========== ====== ====== ====== ===================================== ================================================= ================== 61 37 99.1 37 GTCACTGAGCAACATCCACGATAAGAAGGATTGAAAC # Left flank : CTCGATTACAAGTTTGCGGAGTATAAAGATCGGGTTTATGACACATACAGGACTCAGTTATACTGTTATGCCTGGCTGATTGAGGAGAATTTTGGGCGACGGGTTGACCGGGGTTTTCTGGTTTATACGCGGAGTAATAACCGGGTTATTGAGGTACCTATTTCCGACGAGAATAAAACCGATGTGAAGCGGGCGGCCGAATCAGTTTTTGCAATTATTGACCAAAATCGGTTTCCTAAGGCGACGAAATCCAAGGCTCGTTGTGTAACTTGCACGTATCGGAACGTCTGCATTCGGTGATAGGTAGCTTTCCGGGTGCAAACGTATTTGAATCAACTCCAAAAACGACCTTAAGCTACTATGAATCATCGGGTTAGCTTTACGGAGCGATGCATATTTGGGCGCTGTAAACCGTTCTTTGACGTGCTAAATTATCTAAAAAGAGAGGGAGCAAATAGCGGCTTTTCCCCACTAAATCAAGGCTTTACACATATCAACGC # Right flank : GGCGATAGTAAGAATCCATTCAACCGCAACGCAACCAAATTAGTCATTTGGCCAATGGACGTACGCGGACTCCGACGGGGCGTCACCAGCCTTGATTCCCCCGCGATTTAGCCGTATTTTTGTGCTACTGTCAGATAGAAACTGACCCCAAGCAAGCATGATTCATCAACTGTCGCTCTCGCTCACACCCGAGCAGGCCTTTACCGACGCGACCTTCCGCGCCGAGGCCCTTCGCCAACTCCGGCTTCCTGACTCACCCGACATTACAGTCCGTAAAAAACGGCAGTCTATCGACGCCCGCGGCCGTCAGGTACGTGTGCATGTCGATACGGAGGTGTTTGTCGGCGAGGCCCCTACCCCGCTGCTTCAGCACGGGTTGCACTACCCCAACGTAACCAATGCCCAACCAGTCGTTATTGTCGGGGCAGGGCCAGCCGGTTTATTTGCCGCCCTGCGCCTGATTGAGCTGGGGATTAAACCGATTATTCTGGAACGAGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTGAGCAACATCCACGATAAGAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [36-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 4728811-4726407 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913013.1 Rudanella lutea DSM 19387 RudluDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4728810 37 100.0 34 ..................................... CAGTCTTCAACGAAGAATTTGAAAACTGTAAGCG 4728739 37 100.0 34 ..................................... GGAAAGTTATCACCTAATATTTATTTAGTCGTTT 4728668 37 100.0 38 ..................................... ATGTTTTCTCATGAAGAAAACGGTGATTTTATAAATGC 4728593 37 100.0 41 ..................................... CCGGAGTCCATAAATTCATCATTCGCGGTGTGATCGAGAAG 4728515 37 100.0 38 ..................................... AATGATATTGAGAACGCATGTCTGATCAATCCCGGTGA 4728440 37 100.0 39 ..................................... TCAAATCTTCTCCGTTCTCAACTGCTAAAGCTACTGGTA 4728364 37 100.0 39 ..................................... ACGTGGAGCACTTCAACACACAGACCGAACCCGGTGTAC 4728288 37 100.0 39 ..................................... TTCTTGTTGAAGAAATCAAAGCTACTTCGAACCCTTCGA 4728212 37 100.0 37 ..................................... ATAACCCTGTATGAGGTTTCGTTGCGTGAAATTTTGG 4728138 37 100.0 35 ..................................... TTGTGCCAAAACAGGATAGTCGTTACTAACGAAAA 4728066 37 100.0 34 ..................................... ATTGAACCCATCACCAAAACGGAAATGGGTTCAG 4727995 37 100.0 39 ..................................... TTAGTTAGAGATTGTATTTTGGTCAATACAATTAAGAGG 4727919 37 100.0 37 ..................................... AATTATGAAGAAGGATCTCAACTAAGTACCGTTGAAG 4727845 37 100.0 37 ..................................... CAAGCTTGCTGCTGCTCAGATCTACTGGTTGACCCTT 4727771 37 100.0 36 ..................................... AAGGCCAAAAATGCCGCCACCGTACTGGGTTTCGAT 4727698 37 100.0 35 ..................................... TTGTGGAGGATTAGCGAAATAGAATATCAGCCGGA 4727626 37 100.0 39 ..................................... ACAACCAACCAAAAACCTTAAAACGGTTTCGGTTGAGAA 4727550 37 100.0 34 ..................................... CAGTAAGCCGGTATCGAAAGATTTTCACGACGAG 4727479 37 100.0 38 ..................................... TGTGTGTTCATTGCAGAGTAGGCTAACGCCTACTTCTG 4727404 37 100.0 36 ..................................... TTCACCTGAATTGTATCAAGTGGAGGATGATCGGTA 4727331 37 100.0 34 ..................................... GGAAAGTTATCACCTAATATTTATTTAGTCGTTT 4727260 37 100.0 36 ..................................... TAAAAACTAGAAACTATGAAAGTAGATCGGTTTGAT 4727187 37 100.0 32 ..................................... CACCTACATTAAGGATTACGCTGCCATTAAGG 4727118 37 100.0 37 ..................................... GCTTCGTTGGTGACAACGAAACGAAGACGGATTTCGT 4727044 37 100.0 38 ..................................... GTTTTGTTCGCCCTTGCACTCCTATTTGTTGTCCTCAG 4726969 37 100.0 41 ..................................... TAACGATGGTAAAATTTTTAAAGGAGAGAAACGCACATATA 4726891 37 100.0 35 ..................................... CATCAACCTGGGTAAGAATAAGCAGCTTTCTTGTA 4726819 37 100.0 39 ..................................... CTGATAAAGGTAACTTGTACATGGTCATTAACAATCGTA 4726743 37 100.0 41 ..................................... CACATAAAAACCGGGCAGCATTAGACCTCCATAAACAAGGG 4726665 37 100.0 36 ..................................... CATTGAACCCATTACCAAAACGGAAATGGGAGCAAT 4726592 37 100.0 39 ..................................... CTCAAGTTGCAAAATCTTCAAACAAAAATTTGAAGACTG 4726516 37 100.0 36 ..................................... GGTCCATTATACTACCATCATTCTCCCCCTACGGAT 4726443 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 33 37 100.0 37 GTCTTAATCCTTGTTATGAGGGAAGTGCGACTCTGAC # Left flank : GCACGGCCCAGCGTTACGCGGCCAATTTCACCAAATCCAACTGCGACGCCTACCGGGCTGCCCTCACGGCCTACATACAAGCCGGCGAGCAATGCCCCGGCACCAGCTCTACCGACCTTGCCAACGCCAAAGCCGCCCTTGCCGCGCTCAAGTGCCAGTAAGGCTGACCCTAACGGTACGGGCCTTTGAGACTTGCAAGATGTACGGGTACGTCCCAGAGCTGTCAGCTCGTTTGGTGAGCTGACAGCTCTTTTTGTGGGCAACGTTTTCGCCTTAGGTTGGGCAGTCAATAGCACGCGGGTAACGCGAATCGGGCAGATGTACGCTGATCTCCTTTATCAATCCCGCCTGGTTGGGCTTAATCGGTGTTATCTGCGTGCCAATTCCTCCATACTGTACAAATGTTCAATACGGAAACGATACATCGTAGAGTTTGACCCAGTACTTATGAGACGCGACTCTGACTTTCAAAAGTGGTGCGATTTAGAGGCATTTGCCCA # Right flank : AGTTCAAGTGGTGACATGCCTGATTACCAGTAAGTAAAGAACTAAATTGTGAGAAATTTCACATTGGATCACGGAAAAAGCCTGTCAAAAAGGAACATTCTCCCGCTTACATCACAAGTTTACGGGTTCTTTTTGAATCCTGAAAGCCCGCCAGCCCGATTTCTGTTTACCCGCATCCCAAGCCTGCACAGCCTCTACACGCACCAACATATCGGCCCCTACGCCAGCCAGTAGATCGGCTGGTACGTACACATCGCGCACAAATCCCACGGCCTTACCGGGCAGCATTCGCAACGGCCCCGCTACCTCACGTATAGAGAGGTACGTTAGCACTTCATCAGCCACGAGCCGCGCCTGTAGCACCCGAACCTGCGGGCGTCCGTTGCGCTCAGTAGGCACATAGCGGATGGCAACCCGATCGCCCAGGGCAAGCGTCAGGCCAAACTTACGGACCGGAAAACTGCCTGTCAGTCGCTCATCAATCGCGATATTGGCGTAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTATGAGGGAAGTGCGACTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 3 6008161-6010476 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913013.1 Rudanella lutea DSM 19387 RudluDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 6008161 37 100.0 36 ..................................... TCTTTTAGGTTTTTCCCCTTATACATACCGAATGGA 6008234 37 100.0 36 ..................................... GTAACTTTCCCAACCTTTAACAACGATATAATCGTT 6008307 37 100.0 40 ..................................... GTTGGTTTATGCTTGCGCTGTGATAACTCTTTTGCTTTGA 6008384 37 100.0 37 ..................................... GTAAGCGTCACCACATATTGTAATCAACTTATATATA 6008458 37 100.0 34 ..................................... TCTGTTTCCTTGGGTATATCGTTCGTGTCCAGCT 6008529 37 100.0 34 ..................................... ATCGACTTGATTTTGATTTGGTTTGTAATTTGCC 6008600 37 100.0 40 ..................................... AGCCTTTTGTCTCTGGTAGCAAAGGCTTCTGGACATTTCT 6008677 37 100.0 33 ..................................... CTTGATACAGATGATCAAGAAATCCAATTCTGG 6008747 37 100.0 34 ..................................... TCATCATCGCAGCCCTGTTCGGCTGCAATAGTTG 6008818 37 97.3 37 ....................................T AGTAAGACACACTGATGAAAGAAAACAATTAACGCAG 6008892 37 100.0 40 ..................................... ATGATGAGCGAGTTGAACGGGGGTACTTCCTCTGCCTTGC 6008969 37 100.0 30 ..................................... GTCATCCTAAGGTAGATACGTATTTCTCGT 6009036 37 100.0 34 ..................................... TTAATCGGTTGTTGCAGTCGGCTAAAATAGCGTG 6009107 37 100.0 38 ..................................... CACCTTGAGCACTCTCCCCTGAAATGCCACCATATAAT 6009182 37 100.0 36 ..................................... AGTTCAAACCCCAACCGAAGAGGAGCGTTACCTTTT 6009255 37 100.0 36 ..................................... AATGATACCTTTACTTTCGTCAAATCATGCACAAAC 6009328 37 100.0 43 ..................................... CTGTCGGGATCAGTCCGCTTGACGAGCTTGGTCGTGTCGGGGT 6009408 37 100.0 40 ..................................... ACTCATAAGAGCAGACAGGCTAATGAAAGGATTAGGCAAA 6009485 37 100.0 35 ..................................... GATCTTTCAAGATCCATCAATTCTACAACCAATTT 6009557 37 100.0 34 ..................................... CCTCCAAGTGAGCCCGACACTCCATGTCAACCGT 6009628 37 100.0 37 ..................................... AAGCCTTCATTACGAAGAAAGGTAAGGAAATCCTTTA 6009702 37 100.0 38 ..................................... GTAAACAACATTAGGATGTTTGTCAAGATAAGCCTTTA 6009777 37 100.0 36 ..................................... ACTTTATCCCGAAGGATGCTTATGGCATTTAAGATG 6009850 37 100.0 37 ..................................... TCTTTTTTTGAAATACCCCTTGTTCAACCGTCATGAT 6009924 37 100.0 39 ..................................... AAAAAACGGGTCTGCACCGATCGGGATTAATCCCCTTGG 6010000 37 100.0 37 ..................................... CTTGTTCGAGAGAACTTGTCTCTCTACAAGTTTGTAA 6010074 37 100.0 38 ..................................... CCTCTGCCTGAAATAAGTTTACGACGGTTGTTGTTGCA 6010149 37 100.0 37 ..................................... TTATTCCGAGGCACCCACTGCGAGAAAGCGTTCAATG 6010223 37 100.0 38 ..................................... TGTGTTTTCATCGGGCACTAAGCCCTCAAACACCAAGT 6010298 37 100.0 34 ..................................... TCCCAAGAGTTCAACCACTCCTGCTTTAAGCGGA 6010369 37 100.0 34 ..................................... GTTTTCTCCGCAGCGTAAAAATCCGCAGAGTCCA 6010440 37 89.2 0 .............T...................C.GT | ========== ====== ====== ====== ===================================== =========================================== ================== 32 37 99.6 37 GTCAGAGTCGCACATCCATTACAACAAGGATTAAGAC # Left flank : GAAAGTTGACGACCATAGCGGCAGCTATTTTTCGGGCACGGCCATCGTATCAAAAAAGGGGTTGCCGCTTACCGTACAATCTACGATCAACCAGACGTTCCGTTCTGATATACCCGGCAATAAGAACTTTATGTGGAATGTGATGCTGGCGTACAACTTCCGAAAGACCCTGCGCGTGATGCCCTAAAGCGTAAACAAACGGTACCCTATATACGTAACGCATAAATTAGCCCTGAAGGTCATTGATTGGCTCTTCAGGGCCATGTACTTTATCGAGGTAGTACCGGTTTGTGAAGTGGTTTTTACTAGATAGGGTTTTATATGCGCGCATGGGTAAAATGAGGTCGTATGCCCTTCGGAACTCACAAAAGTTTTGTAAAATTGCCCAATCGGACGGGGTTATGTTCCTTTTTCGATAGGCTTTTGGAAAGATTCAATTATAAATTTCCAATTTTACGCTCTTTAACATATTGTCAATCAGGCTTGTCACCACTTGAACG # Right flank : TTAAACTTGCAGGTATTTGAGAACTGTACGATTTGGTGGAAGCCCACAAAACAGACAGAGATGTCATCTCTCCAAACGAGATGACATCTCTTGAGGGAACCTCTTCCGCAAAAGGAGACCGGCCTGATTGACACGAGACGGTTAAACCTTGCAGGTCTTTGAGACCTGTAAGGTTTGGCGAAAACGAGGACCAGTTTATAAACTTGCGTTGCGACCAGCCTGAAAAACAAGAAACCTGTAAGGCGGGCGGCTGATGCCGTTCCCGAGTCCTTACAGGTCTATACAAGTGATTAAGTAACGCGTTATCGGATGGCCCCCTCCTCAAATTACGTACGGGTGGGCCACAGTATTGCTTGCGGCTTCCACGTGGCTTTGTGGCCACCCCCCTGCTGAGGGCATTACAAAGCCTCGGCAATTCGTTGCAACTCCCAAACCTTCCAATAATTGTAGTTCGTTTGACGAACCAACAGTTTTCGCCGGGTCAACTGTGCCCGCTGCAA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGTCGCACATCCATTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 574-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913014.1 Rudanella lutea DSM 19387 RudluDRAFT_scaffold2.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 573 29 100.0 32 ............................. CCCCTTTACATCCTTACGGGCAGAGGTAAACC 512 29 100.0 31 ............................. CGAACGAGCATTACCCCGTAAGGCGTCCTAC 452 29 100.0 32 ............................. TCTCGCACGTGGAGCTGGTCGTACTGGAGAAA 391 29 100.0 32 ............................. TTCGTGTTGGGCCACGGCCACGGCGTTCCGGC 330 29 100.0 32 ............................. AACTAAAGTCAGGCGTGATTGACGACAGCTTC 269 29 100.0 89 ............................. TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 151 29 55.2 32 NNNNNNNNNNNNN................ GGGCTTGGCAATAGTGAACCTCTGTACTCCAA 90 29 100.0 32 ............................. CTGCCCAAGTTGTTCGTCGTGTGAGGGTGGTC 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================================= ================== 9 29 95.0 39 CGGTCCATCCCCACCCGCGTGGGGAAAAT # Left flank : AGTAAAGTATAATCTAAACATATCGTGGCTGTTTGCTGAAAATCCTGACTTAATTACTGTGGAAAACTCAGATCCGGATCAGACAAATATAAATCAGGATAAACTGAAAACGATTACCGCTAAGTTCATCAGGGAGGCTGAGGAGCTTCTATCGTAAGGTATCATATCGGGAAACAAAAAGAGGGGGCTTGGGTCTCCCTCTTTTTGTTTCTGTCTGGTTCTATCTACTAAGTTAACTCACGATGTAGTCGGATCAGTTCGAAAGGATAGGGCCAGACAGTGAATTGATTCTTACGTACAAAGGAGACAGCCAGCAAGGAGAGTAAGGTGGCCATAGGGACGGGTAAGCTTTCCTGGTACGCATAGATCCGGTAGAAATGGTGCCCACGTTCTTCCCTACTGGTACTGGATGTCATACTACTGACAACATATTGGTAGGGACTTTCTGAATACCATGTGCCTCCGGCATATACACCAATGGCTTCACGTCTTCGCGCCGA # Right flank : T # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.58, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCCATCCCCACCCGCGTGGGGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 89286-89850 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913014.1 Rudanella lutea DSM 19387 RudluDRAFT_scaffold2.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== =================================== ================== 89286 40 90.0 35 ..A..........A......GG.................. CCCATTAAACATCGCATACATATTCGTCACGTTGG 89361 40 90.0 35 .............A......GG............T..... TTCAACAAACATTAAACTCATGTCAGTAACATTAG 89436 40 87.5 35 ............................A..T..CG.T.. CTGGTAAAACATCGCATACATATTCGTAAGATTGT 89511 40 100.0 35 ........................................ CCCATAAAACATGAAACTCATATCCGTCACCTTGA 89586 40 100.0 35 ........................................ TCTATAAAACATCCCATTCATAGTAGTAACGTTGG 89661 40 92.5 35 ...........A.A.......C.................. CCCATTAAACATCGAATTTATAGTAGTAACGTTGG 89736 40 97.5 35 .G...................................... TCCAGAAAACATGAAACTCATATCCGTCACCTTGA 89811 40 100.0 0 ........................................ | ========== ====== ====== ====== ======================================== =================================== ================== 8 40 94.7 35 CCGTATTCCACGAGCCGATGTTTTGATTGAAAGCACTGGC # Left flank : GTTGACCGTGACGGTTACGCTTGTCTCGCTCCGGCAACCCGACGCATTCATACCCGTAACGGAGTAGGTGGACGTGCTGGCGGGCGTGGCCGTGAAGGGGTTAGCCGTGCTGCCGCCCGTCCACGTGTAGCTGGTTGCCCCCGATGCGGTGAGGGTGAGGGTCTGCCCGGCGGTGATGGTGAGCGAAGGGCTGGCGGTGATATTCAGGCTGGGGACAAGACTTGCATCCCCGGAGATGGTCCAGCCTTTGGGCCCCGTCAGATTGGCCCTGTCTGCCGCTGATGTACAGTACTGCCGACCAGTGGCCCCCAGATTCCGGCCCGTGACCGTACCGGAGTTGAAGCCCGTTAGGGTGGCATCGTAATTGGCCACGCTCATGCCGCAGTTATCCAGCATATTGGCCAAATTGACGGCGGGATTCAGACGGGTTCCCCAGGCTCCTAACGATTGATTGAAAGCACTGGCTCTCAAAAACATCAGACTCATATCCGTAACCTTAG # Right flank : CATTCGTAAACATCTGGAACATAATAGTAACATTGACTGTATTCCACGAACCGATATTGGCCGGGCCATTGAGTGAACTACAACCCCGGAACATATAACTCATATCACTAACACCGGCCAAATTCGGCACATCGCTGGCCGAAACGGCCAGCTGATCACACCCGTAAAACGCAGCGTTCATCGACGTCCAGCCTACCGTACCCCACTGTCTTACATCGATCAACCGGCTTCGGTCGGTGCCATTGCTGATTCTGATGCGTTGGAAATTAGCCGGGGCAATGCTCAGGTCAATGGTGGCCCCGGCGGGCAGGCCGACAATGGTGGCCGTTGAGCCCGTAAACGTACCCGAACCCGACGCCGATCCTGGCGAGACTTCCTGCCAGGTGTAGTTGACCATGCCGGAGGTGGCTACCCCAAACGTTAATGAGGTTGGCCCTGAGCCCCCCGTGGCCAGGTTCCAGCGGGTGATGAAGGGGCTGCCCGTGACCGTGACGGTTACG # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTATTCCACGAGCCGATGTTTTGATTGAAAGCACTGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [9,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : NA // Array 3 193024-192812 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913014.1 Rudanella lutea DSM 19387 RudluDRAFT_scaffold2.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 193023 29 100.0 32 ............................. CGCATTGATTATATGAAAGATACATTGTCAAA 192962 29 100.0 32 ............................. ACTCGTAAAAATATTCTTCGTAATAAAGGAGA 192901 29 100.0 32 ............................. GCACTAGCGGAGGAAGAAACTCCCGCCGAAAC 192840 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ATGCTCCCCACCCGCGTGGGGATGAACCG # Left flank : CTCTGACCGAATACGACGTAGATGAGGCTGCGGGAATGGAGCCGTCCGATGGAGCCGTTGGCGTGGTGGCAACGCCCGCCCGTATCTGGTTGGGTCGCAAAGGCGAACAACATGGATTCCGGGTACTCTACGCTACATCAGACGATTTCTGGTTGGGTCGGGCCGCGTCAGGTCGGGCCGCGGCAGGTGTGAAGCCCGACCTGACGGACAAACAGCGGCTTCCGCACTACGGAGTTCGGTTTGATGGGTTGTTGCAAGTGACCGACCCCGCTCTGCTCGCCGAAGCGCTTCGGCAAGGCATTGGACCGGCTAAAGCCTTCGGGTTTGGGTTGCTCTCGCTGGCTCAACCCCAGTAAGACGGCGTTCAATTCATGCTATTATGAACCGTGCGACGATGCCTCTCGGGTACCGTCGCACGGTTGTTTGTCACCAAATAAGGTGTATACAGACATAAACGTTCTTTGACCTGCGAAAACCCTATTTTTACGCAAATTTCCAGT # Right flank : TTGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTGCCCATAACCTCCAAAAGTGCGATGCTCCCCACCCGCGTGGGGATGAACCGATTCTTAGAGTGAACCGCGTCAGCCCCTGCATATGCTCCCCACCCGCGTGGGGATGAACCGGGTTAGTGGTGGTAATGGTGATTGTGCCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAACCCGGCGCGTGGTCCAGTTCGGATGCTCCCCACCCGCGTGGGGATGAACCGCCCTTTGGCCGTTTAAACACACGTTAGAAGAAATGCTCCCCACCCGCGTGGGGATGAACCGGATGGGACGCGCGTTATAATCTACTCCCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCACCCGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGTGGGGATGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 203546-203683 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913014.1 Rudanella lutea DSM 19387 RudluDRAFT_scaffold2.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 203546 29 100.0 32 ............................. GACCACCCTCACACGACGAACAACTTGGGCAG 203607 29 100.0 32 ............................. TTGGAGTACAGAGGTTCACTATTGCCAAGCCC 203668 16 55.2 0 ................------------- | ========== ====== ====== ====== ============================= ================================ ================== 3 29 85.1 32 ATTTTCCCCACGCGGGTGGGGATGGACCG # Left flank : CCGATAAGCCATGATGGTGTTGATGGTTGAACGGGTATCGCCCTCGTTACGGGGCGACCTAGGCCGCTGGCTGATTGAAGTACAGGCGGGGGTATTTGTGGGCCGAGTGAGCGAAGTGGTACGTGAGGCCTTGTGGGAACGAGCTACCAACCGCGCCGACGATGGTACAGTCACCCTACTTTGGCGGACCAGTAGCGAACAGGGCTTCGATGTGCGGACGTGGCAACCTAAACAGTACGTTCCAATTAACGTAGATGGGATCTGGCTCACGCTCCGCCCAGCGGCCGACACATAAACGGTAGAAACGGTCAAAAAACCTCTTCTCCGAACAAATTGGCAGTATTTTCCCCACGCGGGTGGGGATGGACCGAATCACGTCATTACATTTGCACTCACAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : | # Questionable array : NO Score: 4.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.25, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCCCCACGCGGGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //