Array 1 103154-107323 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047130.1 Colwellia sp. 20A7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 103154 28 100.0 32 ............................ GATTCTAAAAGTCGCAGCTTAGTTTTAAGCAA 103214 28 100.0 32 ............................ TAACAACAAATACATTAATTTATTGTGAGCTA 103274 28 100.0 32 ............................ GAGCCAATACCAGTATCAAGGAAATTGCTACC 103334 28 100.0 32 ............................ ATTCCAGAACCTGACTTATCATCAGGTGAGGT 103394 28 100.0 32 ............................ ATTTAATACACCGTAACTGGTACAAGGCAATA 103454 28 100.0 32 ............................ ATCATAGTGGTTTGAACTTTTGGATTGTTTAT 103514 28 100.0 32 ............................ GCCGCCAGCACTCGTCCACTCAGGAACTATGT 103574 28 100.0 32 ............................ TGTAGAAGTGTGATTAAAGCAGTTGGTAATGG 103634 28 100.0 32 ............................ GCGTCAGACTTTTTTATGTCTTCAATTTTTAA 103694 28 100.0 32 ............................ AGCGCGAAAAACTAGCACAAAGGCAGCGCGAA 103754 28 100.0 32 ............................ GGGCAATACATCACAAAGCACAAACGCTTTTA 103814 28 100.0 32 ............................ TGTACATGATCAAAGGCTTTTTTGTTGCTTGC 103874 28 100.0 32 ............................ TCACCAATTAGAGCGGTTAAATTCTCTATCAT 103934 28 100.0 32 ............................ TGACAACAAAGACATTAATTTATTGTAAGCTA 103994 28 100.0 32 ............................ TGTTAGCGCAATGATTGATTGAGCCACATCGA 104054 28 100.0 32 ............................ AGTATGGAATCGATGTAATATCACCTTCGCCT 104114 28 100.0 32 ............................ TGTCCAATAGCGCACCGAGCCGTCAGGATATT 104174 28 100.0 32 ............................ TGAACATTTTGATTATAACGGCTACCCTAAAC 104234 28 100.0 32 ............................ GCGTCGTCTAGCGTTACTGTAACTGCTGTTTC 104294 28 100.0 33 ............................ CATACGATGTGAAATTTAACACTGATGGATCTA 104355 28 100.0 32 ............................ GCCTTAAACGCGCCCGAATCACTAAAGCCGCT 104415 28 100.0 32 ............................ TCACATTCTTCGCGTTCAATATCCATTTCTTC 104475 28 100.0 32 ............................ GTAGCAAAGTCTGTTTCAATGATATCAAAAGA 104535 28 100.0 32 ............................ CTGCTAGCGCGTTAACACTGGGAGATCTGCAT 104595 28 100.0 32 ............................ GCTAAATCATAAGCGTATATAGCATCAGTGGT 104655 28 100.0 32 ............................ TGTTTTGTTGTACGTAAAGCCACCAACGAGAA 104715 28 100.0 32 ............................ CCATAGGAGTAACATTTAACAATGATGGTTCA 104775 28 100.0 32 ............................ ATGGCAGGGGTTAACTGCATCAATGTTGCAAA 104835 28 100.0 32 ............................ ATTATTGAAATGGCCGTTAAGTTTGCGGCTCT 104895 28 100.0 32 ............................ ATTCTTTCGCGCGGCTTCTGCTTTTTCATTTT 104955 28 100.0 32 ............................ CGTTGGGAATGAAGAGTAATACTATAGAAGAC 105015 28 100.0 32 ............................ AATAGTCAGACCTATACTAAACTTATTACTAA 105075 28 100.0 33 ............................ AGAGCTTACGAGCTTACACAGAGAATACCGCGA 105136 28 100.0 32 ............................ TAGCCCCGTAAACGGGGCTTTTAATTCAACTT 105196 28 100.0 32 ............................ TCTTAGAAGACTTGGAACCCCAAAACGTCTTT 105256 28 100.0 32 ............................ ATGCCAAAGTTGCTTTGTTATCGCAAGCAACA 105316 28 100.0 32 ............................ TAATAATAGGAATAAAAGGAGGCTATCAGTAC 105376 28 100.0 32 ............................ CCTCCCCTAACTCTACCCAATAATCGTACCAA 105436 28 100.0 32 ............................ TTGGACGTGATCAAAAGCTTTTTTATTGCTTG 105496 28 100.0 32 ............................ TTCATAGTATCCAATGATAAAATAGTCATTGT 105556 28 100.0 32 ............................ GTTGAGACTTTCTTTCAATTTTAAATAGTTGA 105616 28 100.0 32 ............................ TGTAACCAGTCCTACAGTGGCATTAAAACTAA 105676 28 100.0 32 ............................ CTAGAAAGCAAAACAATAAATAATAAAAAGAT 105736 28 100.0 32 ............................ TTTTCACAGTTTATTGTTTTAAAGTTGTAATC 105796 28 96.4 32 ...................A........ TCAAAACACGGGAGCTGTGTTGATGAGTAATT 105856 28 100.0 32 ............................ ACAATAACCGTTATGTTTTACCTTTCGATGAA 105916 28 100.0 32 ............................ ACAACGGTATGCAATAGGATCTACTTCTTTTA 105976 28 100.0 32 ............................ ACTAAAATCGTGAACCATTTTTGACGCTTCAT 106036 28 100.0 32 ............................ TAAAAGGTGCTAGTATAAAAGAGTTAACCACG 106096 28 100.0 32 ............................ ACATTAAGATCTTTAATAATATCAATACATAG 106156 28 100.0 32 ............................ TGTGCAGAATCGAGCCCAAACTGATAACCCCA 106216 28 100.0 32 ............................ TGTACAGAATCGCGCCCATACACCCATTCCCA 106276 28 100.0 32 ............................ TTGTTAGTGGCTCTAAATTATCAGGCTCACAG 106336 28 100.0 32 ............................ CTAAACATGCATTAGTAATGGTTAAGGAATCA 106396 28 100.0 32 ............................ TAGCAGTGTAGGTATTGTTTGCGGTGTTGGTG 106456 28 100.0 32 ............................ TCCACCGTATATAGTGGTGATAGCTTTTATAT 106516 28 100.0 32 ............................ AGCCCAACAGGGTTAGCTTTCAACAGCGACGG 106576 28 100.0 32 ............................ AAAAAGCACCCCGTAATACGAAACTGCAATTT 106636 28 100.0 32 ............................ GCCATCTAAGTCAATTTTTACGCGCGAGAAAT 106696 28 100.0 32 ............................ TGACTTTGTTCTTAGAACTCCATCGTCAGATA 106756 28 100.0 32 ............................ TTTAAAAAGTAGCTATAAAATAATTATCTCTT 106816 28 100.0 32 ............................ AAGGCGCACAAATGCAGCTCATAAGAATTAGC 106876 28 100.0 32 ............................ AAATGCTTCGCTTATTAGCTTTGTATGGGCCT 106936 28 100.0 32 ............................ TGCTAAATTAGATATTGTTGCTAGTTGGTTTT 106996 28 100.0 32 ............................ ACATAAGCGACCACGGAAACGAAATATTAAGT 107056 28 100.0 32 ............................ ACATTAAGATCTCTAATGATACTAATACATAA 107116 28 100.0 32 ............................ TAGCCACCGCTATGGGCGGGTTCTTATCATTG 107176 28 100.0 32 ............................ TCCCACCAACTCTAATCAATAATCGTACCAAT 107236 28 100.0 32 ............................ TAACAGATAACCTCATTAAAAGGTAAATAGTA 107296 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 70 28 99.9 32 GTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : ATAAAATCAATAAAACCCGTACCAGAAAAGGTGACACATGCGAGTTTTGTTAGAGTGCAAGTGAAAGGTGAAGCGCGTATAGAAAAAGATATGCTCAGCAAAGCGCAGCGTTGGTCTGAAAAATCTGGACAACCGCTTGATATTTGTTTAGCCGAGCTTGAAAAAAGCAAACCTAAAGCGAATAACAACGCACCTTTTATTTGGTTAGAAAGCCAAGAAACGAAACAACGTGATTTAGCTAGCAGTAGAAAATTCCCACTGTTTATCAAAAAGGTAGAGGTTGCCGAGCAACAATTTGGAAAGTTTAATTGTTATGGTTTGAGTGTAAATCATAACCATAAAGGAAAACTGGTAAGTATTCCCCAGTTTTAACCTTAATTTTTGCTCTTTAAAAATTAGAAACTAAAACAACAAGTTATAACAAACGATAAAAACAAGGTAAAAATTCATATTTTACTTTAATCAATTGTTGTAACTTGTTTTTTGCGTGATATTCTATT # Right flank : AAGTTTCACTCCTTTAGCTGTATTTATTGAGTAGTTTTTATCATTTGGCACGGATTTGTCACAAACCTGTCACAGGCATAAAAATTGGTTTTGTGACGAGTAAAAGTAACGGTCACTAAAGGTAGTGTTAATTGATTTGAAAATTATAGGAATTAATAAGATATTTATTTCTGATTACTCGCAGAGGCAAGTAATGGCGCACCATGCAGGAGTCGAACCTGCTACCTCGCCCTCCGGAGGGGCGCGCTCTATCCAAGTGAGCTAATGGTGCATATTACACTTTTTGACTGTTACCCCATGTGACACTTCTGGAGGTGACTGCTGCCTCCGGAGGGGCACGCTCTATCCAGCTGAGCTAATGGTGCATATTACTAATATTAACTATTTTCTTCAGTGTTCTCTTTTAAAATAACTGTAAACACTGAAGAAGAGGTTTATCGCGCTAGGCTTTTGATAGCATACGATAAGCGCGGAAATACTATAGCTAATAAGCGAGTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1547269-1548474 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047130.1 Colwellia sp. 20A7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 1547269 33 100.0 32 ................................. TTTAAGTCAGGGTTGTTATCATCTGTGCATAT 1547334 33 97.0 32 ................................G GTTTTTTGTTCGGTTGTTGACGGAGTTATTTC 1547399 33 100.0 32 ................................. TCATCGCTTAAATGCTAAGTCGCTACCAAAAG 1547464 33 100.0 32 ................................. ACGTAGTTGGGCCCTATGCCGTCGGGTGATGA 1547529 33 100.0 32 ................................. TTACAGCAGCACCTAACGCAAAGAAAAACCAA 1547594 33 100.0 32 ................................. CTGTGCTCGTTAATTGGTACTGATGCTAGCTC 1547659 33 100.0 32 ................................. ATAACACGTATACGGTAACGCACCTGTATCAG 1547724 33 97.0 32 ................................T TTGCTTGAACCTTATCGAATTATCAATATTTA 1547789 33 100.0 33 ................................. CATAGGTCTATCTCGGTTGCGAAACTACTACCA 1547855 33 97.0 32 ................................G CCCATGGTTTGGCTAACAATGCTAATACCACT 1547920 33 97.0 32 ................................G AACAACAATATTGGCAACTAAAAACAGAAGAT 1547985 33 100.0 32 ................................. CGTTATCGACTACGCTAGTGCGGAATTTACCG 1548050 33 97.0 33 ................................C CTGATTCAAAGCGCGCAAACTTATTTAGCAAAA 1548116 33 97.0 33 ................................T ATTTAAACAGGATTAAAAACAGTGAACACTAAA 1548182 33 97.0 32 ................................T CCTGAACTGCTTGAGATAACAACGGCATCAGC 1548247 33 97.0 32 ................................G TGTTCAAGCTGCCGATGAAAGTAACAATGTAA 1548312 33 100.0 32 ................................. ACTATACATTGGTTGAATGACAATGCTAAAAA 1548377 33 97.0 32 ................................T ACGTCTGTCAAATATGATGACTTAGTTGATTT 1548442 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 19 33 98.6 32 GTCGCACCTCCCGCAGGTGCGTGGATTGAAACA # Left flank : TTGCCCCAATGAGCGAAATGATGATGTTAGTATCAATAACACCAGATAAAGACATTTCATTACCTTGGGCAAAGCGTAGTTCAACAGTAAAGGGCGGTTGTGTGAGTAATGGCGGTGGTGAAATAGGAAGGTGCACAAATAGCGGTGCTTTTTCAGCAGGTTCAAGCGTATTTCGCCATTGCTTGAGCTGGCCGCCACTGATCCTTAATGCTGATGTTATTTTGCTAGAAGAATAGTGATTGAGTAATGCTACGGCTTGCTCACGCAATGCGATGGGCGTTGTGACTTGACGACCACTTCTGTTGCTACGCCAGTGCTCAAAAGCAGTAACGACCGTTGTTAATTGATCTTGGTTTGGCATGATTGCATCCTAGTAATTTGGTTGCGATCATTAAAACAGATCAAAAGGGGGAAGTTGAGCTAGGCTGCCGTAAGCTCACTAAAAGCCTAGCGAAAAATTATCATTTGAGTTAGGCTACATCAGTCTTTGAAAGAAGGCG # Right flank : AGATGCGTATGCGGCACAATTAAAGGCTGGTTTAGGTCGGACCTCCCGCAGGTGGAAAATCTCTAGTATCAGTGCCACCTAATTGCATTTACCTAAGCCAGCCAATTGCGTTCAACTCTGCCACAATATTTCGATCTTAATAGACCTTTCATCTTTGGATATATTGAACACCACTAACACACACTTTTGCAGCTAAGAATTGAACTAAATTAGTCCTCAAAATTAGGCAAATTTATGTCAACAAAGATACGAAAGCGGAACAAAATATAAATTCTATTTCAACACTTAATTTGTGTTTGGTGACATAAAAAATCAGTTGCAAAGAGGGTCAGCTTTATGTTCATAAAGCTGACATAAAATTAATAATCCTAAGGCGCTTTAGGGCACATTACGCCATAGAATTTCAATCTTGATTTAGGTTTCTTTGTCGACGGTCAGTATAAAAAATAATACGAAGAATGCAGAACTGTTAATAATAAAAGGAGTTAGCGATAAAGGAA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCCCGCAGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //