Array 1 3264-68 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETWB010000068.1 Belnapia arida strain T18 NODE_68_length_13224_cov_216.773701, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 3263 29 100.0 32 ............................. CAGAACAAGATGGTATGGGCTGGCGACAAGGC 3202 29 100.0 32 ............................. ACCTGGGACGACGTGCCCACCACGCCCGAGGG 3141 29 100.0 32 ............................. GCGGGCGACAGCACCGCGCTGATGGCCGTGAA 3080 29 100.0 32 ............................. GGGTGGCTTCTTTTCCGCAAGGGCGCGGCGCC 3019 29 100.0 32 ............................. CCGGAGACCGTGGCGACGGCCAATCCGGCGCC 2958 29 100.0 32 ............................. ACGGCAACCGATAGCATTGTGCGCTATACGGG 2897 29 100.0 32 ............................. GTGACGGTGAACTTCGGCATGGCCGGGGTTCC 2836 29 100.0 32 ............................. GTCGCGGGGCACGCCCCGGACCTCGGCCGTCG 2775 29 100.0 32 ............................. ATCATCATCGGCGCGCTGCTGGTGGTCGCCGC 2714 29 100.0 32 ............................. TTCTCGGACGAGGCGGCAGCGCTTTCGCCCGT 2653 29 100.0 32 ............................. CGCAGTCTCGTGCGGGTGCAGCCTCGTGCGCA 2592 29 100.0 32 ............................. TAGCCCATGGCGCCACCGATCACCGCGCCGGC 2531 29 100.0 32 ............................. CTGGCGGCCGAGCGGTTGTAGGTGACGCGGGA 2470 29 100.0 32 ............................. TCAGCGAAGCGGTCAGCCACCGCCTGCCAGAA 2409 29 96.6 32 ....................A........ GTCTCCAGCAGCGTCTCGCGGTCGGTCCAGAT 2348 29 100.0 32 ............................. GTGATTGCCCGCTCGGAGGTCAACGGGGCACC 2287 29 100.0 32 ............................. CCGGCGGGCTTGTGCGGGATGAAGCCGCGGAT 2226 29 100.0 31 ............................. GTGGGGTGTCCCTGCACCAAAACGCCCGGCG 2166 29 86.2 32 ......A..A..G.C.............. GGCGCCACAGGTGCGGGCGGCGTCAACGATCA 2105 29 86.2 32 ..C..T......G.C.............. ACCTACACGGCCGGCGCTGAAACCGCCTATCT 2044 29 86.2 32 ..........T.G.CA............. GCGACGTCCTGCGTGGTGATCTGCGTGTTCTC 1983 29 89.7 32 ......T.....G.A.............. ATCGGTGATGCGGACACGAAAATGCTGGTCAT 1922 29 82.8 32 A..........AG.C.T............ CGCAGATTGCCGATGCCGCGCATTTTCTGAAT 1861 29 75.9 32 ...C.......TGAC.........GA... ATCATTTCCACGTCCATGTTGTCAAACAGATT 1800 29 82.8 32 A.......T...TTA.............. CCGGCGAAGCCGTTTGCAAGAGCGCTGTTCAG 1739 29 93.1 32 ...G........G................ ACTTGGGTAATCTGGGAGCCCTGCTGCGTAAG 1678 28 93.1 32 ............-.T.............. GCGGCGCTCCCGACATCCGACCCGATGACCTC 1618 29 86.2 32 .......TT...G...............A TCGTGCAGAACGTCCTCGATTTCCCATCCCGA 1557 29 79.3 32 .......T....TCT..........A..T GCCATCATCTCTGCATCAAGATCGGCCCGCCA 1496 29 82.8 32 .......T...AG.T..........C... CCGACTGCCACGGTCGACGAGTGAATTGAGCA 1435 29 89.7 32 .......T....G.C.............. ATGGTTGCCGCCTTGTCGCTGTTGTCGAAATC 1374 29 89.7 32 A.......T...G................ AGGCCGATGCTCTTGGTGATGTGGCCGCGCTC 1313 29 82.8 32 .........TT.G.C.......C...... TCGATCTGGTTGCCGGCTAGCGCATAGAAGTG 1252 29 82.8 32 CCC.........G.T.............. TCGCCGCCGGTATCGGGGAGCCCGAATGCCAT 1191 29 82.8 32 ...G....T...G.C..A........... ATGGCAAACGCGCTAACGATGATCGACGCCTC 1130 29 86.2 32 ......T.....G.C.T............ ACGGCGCGTTCGGCGAGGTAGTCCGCGCAGAA 1069 29 79.3 32 A.......T..TG.T..........A... GCGGCGCCCTCCTTTTGGGCGAATTCGAACGC 1008 29 89.7 31 ...........AG.C.............. TGGGTGCGGTAGCCGATAACGCCGGTCTTGC 948 29 82.8 32 .......T....GAC.T............ GGCCAATACTGGAACCTCATGGAAATGGTGGC C [946] 886 29 79.3 32 C.......T...GAT...A.......... TAGGTCCGCAGCCGGCCACCGACCGTGAACGT 825 29 79.3 31 AA......T...TCC.............. ATGGTGAAGATGCCTGTTCCACCGGCGCCGT 765 29 82.8 32 .A..........G.C.T...........C AGGATATCGCCGTCTATTTCCTATACGGTGTC 704 29 86.2 32 ...G........GAC.............. TAGCCTTGGCCAGCGCTGTAGCCGACGGCGCC 643 29 79.3 32 ...........AT.C..A.......A..A GTGGTGAACGACGGGACCAACACAGGTGAAAT 582 28 86.2 32 C............T.-.........T... ACCGTCAACAACGGCGATGCTGCTCCGTGCTT T [572] 521 29 75.9 32 C..........AG.T..A.....A.C... CCGACAGCGACGGCCGACGAGTGGATTGAGCA A [501] 459 29 86.2 32 ........T...G.C.............A CTGAACACCGCCTTGTACGCCTCCCGCTCGTG 398 29 82.8 91 .......TT...T.C....C......... TCCGAAGTTGCGTGGACAGGGAAGGTGTGTCCGTGTTCCCGCGAGCGTGGGATGTGCCGTTCGGCCGCCTCAACCACAGTTGGGGTACGGT 278 29 89.7 32 ...C........G.C.............. TCGTACAGTGTGACGTGGTTATCGACATGCTG 217 29 82.8 32 ...........AG.T.......C...T.. GGGGTCCAATGCTAATGTCGGGCGAGATAGCG 156 29 86.2 32 ...A...T....G.C.............. ATCAACTACGGCAACATGACCATGACTGAGTG 95 28 82.8 0 ........T...T.T..........-..T | ========== ====== ====== ====== ============================= =========================================================================================== ================== 52 29 89.7 33 GTGTTCCCCGCGCGGGCGGGGATGAGCCG # Left flank : GGCTGCGCTTCACGCTGCGGGCGAACCCAGTATCGGCCGAGCCGGCCCCACCGAAGGGGAGCGGCGGCCCGCGGCGCGGCCGTCGGCATGATATCGTGACAAAGACGCTCCTCCCGCAGCGTGGCGCCGAACCGGGCACCATCGATTATGACGCCGTGGCCCTCGCGGCGGCCCGCGACTGGATGGAGCGGCGGGGCCGCGACGCAGGCTTCTCGCTGACCAAGGACTTCGTGGTGGAAGGCCGGGATTGGGTTAGCATCCGCAGACGGCGCCAGCGCCCTATTGAGATCGGGGTGATGGATTTGGCTGGTGTGCTGGAGTTGACCGATCCCGAGGTCTTCATGCAGGCGTTGGGTGCTGGGTTTGGCCGTAGCAAGGCATTCGGCTACGGTTTGATGATGGTGCGGCCGGCGGAGTAATCGCCGACCGTCATCGGCTCACACGCCGGTGAGTTCATTGACAACTGAATCCGCAAGCATTTTCAGGTGTTTCCGAGAAGA # Right flank : TCTGGTACGGCTTCGCTGTAGTCTAGTTGGCTGGACCTTGCGCCGGGGGTGCCGGTTCCTTCTTCACC # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGGGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [85-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11726-12420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETWB010000068.1 Belnapia arida strain T18 NODE_68_length_13224_cov_216.773701, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11726 29 96.6 32 ........T.................... GTGCCGGGCGGGCCGGTGGCGGCGGTGACGTT 11787 29 100.0 32 ............................. CTGACCGGACCGACCCTGGCCAATGCCACCGT 11848 29 93.1 31 .................AA.......... CGGCAGCCGGCAGCGCCGACCTGCTATATTC 11908 28 93.1 32 ........-...................A GGGCCGCACGACTATCAGGCCGATGTGCGGGG 11968 29 96.6 32 ...C......................... ATCGGCGTGACGCCGGCCGCGCAACCCAAGAC 12029 29 86.2 32 ......T......GT............G. CAGGGGATTTGCCCCTAATTGCCGCCCGGTGC 12090 29 86.2 32 .............G......A.C...T.. CTAATGCAGTTCGAGGGACATGGCGGAAGGGA 12151 29 89.7 31 ...........T.G......A........ TATGACCCGGCGACCGGCATTTTTGGCATGC 12211 29 82.8 32 C...........TGT..........T... CCGGGTGCGACCGTTGACGAGTGGACGGAGCA 12272 28 93.1 32 .............-..T............ TCGCCTGCGTTGTAGAGAATGCAGGTGTTCGT 12332 29 79.3 32 ......TT.....CT..........A..A TACCTGATGGCTCGGCGCGAGGTATGCGTCGT 12393 28 79.3 0 ........T...T.A.........-.T.T | ========== ====== ====== ====== ============================= ================================ ================== 12 29 89.7 32 GTGTTCCCCGCGGACGCGGGGATGAGCCG # Left flank : CAGCACACCTTGAACCGACAGCGAAATCAAGGGCCATCCCTGCTCAACAGGGAGCAGTAATCAACGGCTGGATAGAAGGGTGGACAACCTTTCAGCCCCTATGAAGAGCCCTGCATAAGCAACTGTAGCGAGAGATAGCTGCGTCGGGAAGGGCCGCATGAGTAGGAGCCAGTCCCAAACCCGTCACCTATCCACAGGTTCGTCGCTGTGTTGTAGGCGACAATTGACGTGGCCCACTTGGATGGACCTTGCGTCGAAGGTCCCGGTGCATGCTCCATTGATCGGTTGGAAGCGGGGTAACCGACTTATCGGCATGCTTATGTTGGCTGATCCTGAGGTCTTCATGCAGGTGTTGGGGAAGGGTCAGTCGCATCAAGGCGTTCGCCTACGTTCTGATGATGGTACAGCCGGCCAACTGATCGAAGACAGTCACCGGCTCACGCGTCAGTGCGCTCTTTGAAAATCAAATCCGCACAGCTTTTCAAGTGCTTCTGGGAAGA # Right flank : TCTAACCTAGAGTTACTCCCGGCCCCTGGTGAGCGGGTCTGGCACGGTCGGCTGCGTCATGGAGGTGCCGTAGTCCATTTGGCTGAACTTGCATCGAGGGCTCAAGCCTTCTCCACCAAGCGGTTCATTGTCGGAGGAGCATTGACCGCTTCGAAAACAGCCAAAAAGTTTGCTTTTAGCTGTCTCAAATCTCTGCCGCGGAACTCTCCTTCTGATTGATGACGCGATGATGGTTCTGGTAGGAGCCGGGTGCTGTTGGCTCCGGCGGTCGGTCTGCCCCCTATGCCGAGACTTTTGTCGCCGACCCTAAGCAAAATGGCTTGGAAGCAGCTTTGCCGGCATCGTTTGCTGGAGGTGCTAGGAACTATGCTTGGGTCCATGCTTGGGACAATACCGGCAGCCATTTGACTTGTTCGCCTGGACCCAACAATTATTGCCGCGATCCAATGGGTGCATTTCCGGCCGAGGTCTGGGTTGGACAACGGGTAAATACCTGTCTC # Questionable array : NO Score: 3.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //