Array 1 170691-171523 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSY01000110.1 Nostoc sp. ATCC 53789 scaffold2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 170691 37 100.0 34 ..................................... ACGAGTAGATTGAATCTGTTTGCCATTCCACAAC 170762 37 100.0 36 ..................................... GTAAGTACTTTTCTTTGATTACGGCGAGGGCACAAT 170835 37 100.0 31 ..................................... ATTTACATTTGTTGGATCTGCCTTGAGGAAA 170903 37 100.0 35 ..................................... ATTTACTTTCATTTACGCTGATAAACAGCAAGTAT 170975 37 100.0 37 ..................................... CCGCCATCACCCCAGACTTACACAGAGGAAGAGCTAC 171049 37 100.0 35 ..................................... GGGAAATTTAATTCTTTTAATCCTAAAGTGCTAAC 171121 37 100.0 37 ..................................... GATATGGTGACAAATAACCCTGTAGCCGCCGCCGCTA 171195 37 100.0 36 ..................................... GTGTAAAAACAAAACATAAAAATCCCAAGCCTTGAT 171268 37 100.0 35 ..................................... GAATACTTCAAATACTCGCACCAAAAACCGTATCA 171340 37 100.0 39 ..................................... TTCTCTCGTGTTGATGTAGACCAAACTGGGGTAACTGGC 171416 37 100.0 34 ..................................... TAGCAATACCACTCGGTGAAGTTCCAGAGGTAGC 171487 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 100.0 35 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : AAGAAGGTGTGGTGCATTATGGCGTTCCCAATATGCCAGGGGCAGTACCTTGGACAGCAACCCAGGCACTCAATAATAGTACATTACCTTATATCGTCCAGTTGGCGAACTTGGGAATTATGGCGCTAGAAGTTAACCCAGCCTTAGCTAAGGGTGTGAATGTGCAGAATCATCGCTTAGTGCATCCGGCTGTACAAGAGGTATTCCCTGATTTGGTAAATTAAGGTCTGTAAGGATTAGGCGATCGCTAATCAGACTAATTTTCTTGCCTTATGCGCGGATGGGTAGGTGTACAAAATGAGAAGGAGCAAAAAATGGCTACTGCTCCATCTATACAATGCTTTCAGGGCACTAGTATTTTTAAACCATCCGCGCACCTTATGGGGACTGGCTTTCAGCGATTTGCATCTTGTGCTATGACTATTCCCTATGTTATGATTCACACATTCGCGCAACTGCACCTTGAAAACCAAATACAGCAGCGCTTTCAGAAGCCAGCA # Right flank : CAATCGCCTCACTTTATCAATCGGCTATTGCAGATGTTAATGCTGCATTAAGGCAGTAATAAAATCAACTTTTTAAAGCATCACCAAACTACCTTCTGCTTCTTCTTCTAGTTCATAACCATTAGCTAATTTTTCAATTGCTTGGTCAAGCATACCCAAACCTTGATCTACCTTTTCAACTAAACTTAGCTGTCCTCGAAGTTCGGCAGCACCAACGAAACCCTTAGCATACCAAGTCATGTGCTTACGGGCTTGACGCACGCCGCGATCGCCTTTATATTCCCATAATGCTTGTAAATGATCTCTTGCACATTCCAAACGCTGAATCGGAGTAGGTGTCGGTAATATTTCCCCAGTTTTCAGGAAGTGATCGATTTCTCCAACCAAAAACGGATAACCCAAAGTTCCACGGGAACACATCACACCATCAGCACCAGTTTGTTCTAAACATTTTACCGCCGCTTCAACGGAAAAAATATCTCCATTGCCAATTACTGGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 134724-134970 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSY01000013.1 Nostoc sp. ATCC 53789 scaffold11.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 134724 33 100.0 38 ................................. TAGTTTACAGTCTGCCATCTGATGAATCTGCTAGGTTT 134795 33 100.0 39 ................................. GTGACAATTGATGGTGAAATTGTTGATAATGCTTTGTTT 134867 33 100.0 38 ................................. ATTAAATCGCTACAAACCAGCAACCATAATGCTTGTTT 134938 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================= ================== 4 33 100.0 39 CAATCCCTAATAGGGATTTAAGATAATTGCAAT # Left flank : AAATGGGATGGTTATGTGGCTTCGCGCGATCGCCTCATGGCTTTCCTCGGACAGCGCCAGCCCTCTAATCCAGTATCCTTAGCAGGCGATGTACATTCCCACTGGGCGATGAATCTCAAAGCTAACTTTGATAATCCACAATCCGCCACAGTTGGCAGTGAATTCGTCTGTTCTTCAATTAGCTCTGGTGGTGATGGCTCAGACAGCACCCCCGCAGTTGAAGCTTACTTACCCGATAACCCACACATTAAGTTTTTCAATAATCAACGGGGCTATGTTCGTTGTTCCCTGACTCCCACAAACTGGCAGACAGACTATTTGGTTATGTCAAATGTCACAACCCCATTTGGCACGCTTAGTAAGCGGGCTTCATTTGTGGTTGAAGATGGTCGTCCAGAAATACAACAAGTTTAATGGTTTAAAATTCCCAGGTATTGACACCAGATAATCACAGATGGATACAGATAAATTATCAGTGTTCATCTGTGTTTTCATTTTCA # Right flank : TCGCTGGCTTCTGAAAGCTTTGCCCTATTTAGTTTTCAAGGTTCGGTTGCGCGAATGCTGAAATGATAACACGATGAATTGTGATTTTGCTAGAGGCAAATGGCTGAAAACTAGTCTCCATAAGGTGCGCGGATGGTTTGAAATGCGTAGGCGTAGCCCGCCGCAGGCATCGCTCCCAAGTTCTTACATATAGCACAGTTCAGCCATTTTTATAGTTACCCCTTCCCCAACACCTACCCATCCGCGCATTTAGCAAAAAAACTAATCTGATTGGAAAGCTGCTTACTTATAAATACCCTACTCGATTAGTTAGAGTGATGCCGGGGTGGGCTACATCTACAGAATACCAGCACCCCCATGATTAACTTTATTTGCCAACGTCTTCAAAGTCTGTTATCGCACAAGCAAACTCCCTAAAAGCTGTTTTAATCAAAACCTCTTTCGTTCCCCTTTCCAGCGAAGAATTACGTATCATGTCTGTTAATTCTATGAACAGTAGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATCCCTAATAGGGATTTAAGATAATTGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.70%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 56220-58095 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSY01000122.1 Nostoc sp. ATCC 53789 scaffold21.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 56220 37 100.0 37 ..................................... ACAGCTAGGGTGAAGAAGCTGTATGAGTTGGAAGTAA 56294 37 100.0 34 ..................................... CAATCCCAAAATGATTGGCATTGTACAAGCTTTC 56365 37 100.0 34 ..................................... CATTCAAGACATCATGCTGGGTCAATATTTGCGA 56436 37 100.0 36 ..................................... CGGCTAATGCTCCGATTGTATTCAAAGCTTATCCTG 56509 37 100.0 35 ..................................... TAGTAGATGCTACTAGCGGTAAATACATTAAGGTG 56581 37 100.0 35 ..................................... TTAGCTGCTCTAGCTACAACTAATTCTGCTTCAGA 56653 37 100.0 38 ..................................... ACTTGTAAGATTAGTTCCTGCACCTGAAACATCGTTAG 56728 37 100.0 43 ..................................... CGATCGCCTGCCAGTTTTAGCTGTCTCAGCCTGAAGCCCTCCC 56808 37 100.0 37 ..................................... GCTTATCAGGAATAACAGCAGTTCTGAATAAACTTGG 56882 37 100.0 37 ..................................... AGTTTATTAAAGCTACAGAGAATATGCCTATGCTGGA 56956 37 100.0 36 ..................................... CCTCAAAACTGGGAAGAATTTGTTAATCTCACCACA 57029 37 100.0 36 ..................................... AAACACACGCCGATTCTATTCGCGGAATGGCAGAAC 57102 37 100.0 36 ..................................... CAGAACAGCAAAGATTTACTCTGAATGACTCGGAAC 57175 37 100.0 41 ..................................... ATAAGTGGGAAAAACCAGATGAGTATAGGGAAGAATGGGTA 57253 37 100.0 36 ..................................... CATAGAGGCTGGGTATGTCGTTGCAAACAGTGTTGA 57326 37 100.0 36 ..................................... ACGATGATACACGCAAAAAGTTATTCCCCAAGTATG 57399 37 100.0 35 ..................................... GTTTAAAGTTGCTCTACCAATAGTGTCGTTTACGA 57471 37 100.0 36 ..................................... AAGCGGGGGCTAGTTACGGCTTGGAGTGGGCATTTA 57544 37 100.0 35 ..................................... CTTTTTGTTGTTCTGCTGACACTTGTTGAATTTTG 57616 37 100.0 37 ..................................... TTTACAAAAAAAACTATCTTTTAACTACTAGCGCATC 57690 37 100.0 37 ..................................... AACCATGAATATTCTGAAAAGAATTTAATAATCCCAT 57764 37 100.0 36 ..................................... ATCTTCTTCTATCTCACATATATCTTTCTCTATGTA 57837 37 100.0 37 ..................................... CATTTACATAACCACCCTCACGGTGTAAACGGTCTTT 57911 37 100.0 38 ..................................... CGTTTTGGACACTACAGGGATATAACTAAAAAAAGAAT 57986 37 100.0 36 ..................................... ACTCAAGATATGCTCATGAGGGCATTTAATGAAGAC 58059 37 97.3 0 ................................T.... | ========== ====== ====== ====== ===================================== =========================================== ================== 26 37 99.9 37 GTTTCCAAAGCCTATTACCCCGCAAGGGGACTGAAAC # Left flank : TGTGGGATGGTGAGTACACCATTGGGTTACAGCACCTGAAATCTTACGAATACTTGCCTGCCGAGTGTGAGCAGATGCAGGTGATTTGCGATCGCATCAATCGGGTGTATTTCGATTCGCTAGAGGAGACAGTCAAAACTCTGTTGCAGTCGTTAGGGAAATTGAATCGGCCTTATTTAACGGCTGTCGAAGAGAAATTGTTGAGTTTGATTGAGCGAGAATACGGGCTTATAGATCAATCTCCACAAACTCATAGACAATAGTAGATACACATCTTATGATTATGGAATCAATTTGATATTTGGCAAATCGAAGCGGGGTCAAAAACCCTGGGGATCTGCCAAAATCGCCAGAACCTTGACAAGTAAATAGTTTCATAGTTTCAGTGCGAAGGAAAGTTGCAAATTACTTGCAATAAGAGGGGCTGAAAATGACCTTTTTTTTCGATCCGTCAAAAACCTTCCCAGGAAGCTTACTCCGTAACAGTTTCAGATGGAGCG # Right flank : CCAACTCAAGCAATTAACGATATTTAGGTGAAAGTTGTAGAGGTGAAGGAATCATGTTCATTTTCAAGATTTTGACTGCACTCATTTGGAATATTGTCATCTTCGGTGGTTTACTATTCTTGCCCGCAGGGACGTTAAACTGGTGGCGAGCCTGGGTGTTTTTGGGTGTTGTCATTGTTGGCACTGTGGCAACGATGATGGGTGTGTTCCGAGAAGATGACGATTTATTCAAGGAACGGCTCAAACCACCCATTCAAGAGTCACAACCCCTGGCTGACAAAATTCTTGCCAGCTTACTGATTGCAACATTCCTAGGTATAATAGGCTTCATTCCCTTAGATGTGTTCCGATTTCATTTGTTTGCTCAACCAAGCGAGATCGTTTCAGTACTGGGATTGGTCGTGTATGTCGTTGGTTGGTGGATTATTTCTCTATCGTTTAAGGTAAATACCTTTGCAGCAACTGCGGTTAAACATCAGGCAGACTGACAACAAACAGTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAAGCCTATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 60819-59229 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSY01000122.1 Nostoc sp. ATCC 53789 scaffold21.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 60818 37 67.6 36 T...T.A.....T..C....TAA.A..CTT....... ACGCAACCACCACACAATGACTCAAGATTGCATCCA 60745 37 94.6 34 ............A................T....... CTCAGTTCTATAACAGCGAGGATGCAGAGTTTAT 60674 37 100.0 41 ..................................... ACTGGAATTATCTTGGCAGTTCTCGTAACGGCCCTTCTTTC 60596 37 100.0 38 ..................................... CTTCATGTCATTGCCTGGTTGAGCAAACCGCATTCTAG 60521 37 100.0 37 ..................................... ATAAGTGGATTTTCAGATTAAGTTGTTTACATTCGAC 60447 37 100.0 36 ..................................... GTACCCGGTGAAAAGCCCTATTCACAGTATCAACCT 60374 37 100.0 37 ..................................... AAGATTGGCTTTTTGAGGTAGTCATCCCAAAGCTTCG 60300 37 100.0 43 ..................................... TTAGCGGCGCAGGCGCGGTACTCAGTAGCTATCAGGATTTATT 60220 37 100.0 37 ..................................... TATTGAATAACTAAATTAGCTTTGGTTAGCTCTTTAC 60146 37 100.0 39 ..................................... CCCCCATTTGTTCAGCTTTAGCTTTAGTAGCTATAGCGT 60070 37 100.0 38 ..................................... TACTTTGTTGCTCAAGTTGCACTGATGGATGCAGAAGT 59995 37 100.0 35 ..................................... GTTGATATATTAAATCAAAGTAACAGCATTTATTT 59923 37 100.0 37 ..................................... TCACTATTATTTATAAGAGATATTAAATTATGTTTAA 59849 37 100.0 39 ..................................... TGTTGGTGGTGCGCCCTGTGCAACTCATCGCCAAAACAA 59773 37 100.0 35 ..................................... TTCTAGATAAGTCTAGAACTTGTTTGTAAACACTA 59701 37 100.0 34 ..................................... CCTCCGGTGATGTAAATTGGCTCGATTATGGTGG 59630 37 100.0 36 ..................................... GATAAACGACCCAGGAACAGTATACGGACTACTTGT 59557 37 100.0 34 ..................................... GTTTTGAGATGGCGATCGCTTACCTCTATAGCGA 59486 37 100.0 38 ..................................... CGCAGCCGATATCCGCGAACTAATATCTGCCGCTAAAG 59411 37 100.0 36 ..................................... GCCTACTAAGTGCGAGAGAATTCGACACTGTTCAAT 59338 37 100.0 36 ..................................... TCATGATTTTGCACTACCAGAAGTAATCTATGACAT 59265 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 22 37 98.3 37 GTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAAC # Left flank : GGCGTTCCTTACATTTCACATTTGTTAAGTGTAACAGCTTTAGTTTTAGAAGCTGGCGGTACCCAAGAAGAGGCGATCGCTGCTCTTTTGCATGATGTAGTCGAAGACCAAGGTGGCAAACCCATTCGTGAGGACATCCGTCAACTCTTTGGTGAAACAGTTTTGGCTATTATCGATGGCTGTACTGAGTGGGACACACCTCCTAAACCTCCCTGGCAAGAACGTAAACTGCAATATTTAGAAAAACTGCGCTATGCTTTACCTTCTGTACGCTTGGTTTCTTTGGCTGACAAACTGCATAATTCCAGATCGCTTTTAGCTGATTGCCAACAATATGGAGATGTCATCTGGACTAATTTTAGTGCCGGTCGAGAAAAAACTTTGTGGTTTTACCAATCATTAGTTCAGGTTTACCAACAGACCGGATCTGATTGGATGACACAGGAAATCGAAAGAGTTGTTAATCAATTGTGCCAGGAAAACCCTGCTTAATCTTTAGA # Right flank : CGCTCGGTGCTGAAACTGTTACAGAGCAGGCTTCCTGGGAAGCATTTTGGCAGACCTCAAAAATAGGTCGATTTCAGCCGCTATTATTGCGACTGATTATCAACTTCCCTTAGCACTGAAACTGTGAAACTATTTACTTGTCAAGGTTCTGGCGATTTTGGCAGATCCCCAGGGTTTTTGACCCCGCTTCGACTTGCCAAATATCAAACTGATTCCATAATCATAAGATGTGTATTTATTATTGTCGAGTTTCTTACATTTAAGTTAATCTAATGATGCGTAGACGTAGCCCGCCGCAGGCATCACAAGCAAGAACTGTGATGTTCACTGAAACTGCGATCGCTAATGTATTGCCCTGGTAGGGGGATAAAGGTAAGCAGTACTCATACAGGGCAACTTACCAGAGATATGGCAACAACTTATACCTAATTTTTTGTGTATAGCTGTCGTAGCCCTTAAGTTCTTGCCGTAAAAATTGCTCCTCAAATTGAATCCGTACA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 3 88639-90524 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSY01000122.1 Nostoc sp. ATCC 53789 scaffold21.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 88639 37 100.0 38 ..................................... ATATTCTGAAATTCGACGGCCATCCGTCGAAGCTATAA 88714 37 100.0 37 ..................................... TAATAGCATTGTTATGAATATAGAGAAAAAGAAAGTG 88788 37 100.0 36 ..................................... ATTAAAGAGTTGGCTAGCGATCGCAGAATATGAACG 88861 37 100.0 34 ..................................... CAATAGTTGGATCTGAAAGCATCTCAACTATTTG 88932 37 100.0 35 ..................................... TTGCCAGTTTCATGGTCTTCTATAAGCACTATGGC 89004 37 100.0 37 ..................................... ATTAAACGTGAAACCTGGATTACTTGGGAGAAATTAG 89078 37 100.0 42 ..................................... TAAAGCTGCTCAAGTCCTTGGGTTCTGCCAAATAGCTCTAGG 89157 37 100.0 40 ..................................... AATAATTGGGCAACTGCGATCGCAATTACAAAACCACACA 89234 37 100.0 38 ..................................... TAATCAGCACACAAAGCACAGTTTAGCTTTATTCCTGC 89309 37 100.0 37 ..................................... AAGAGATTGCCTTTTTCCTCAACCCTGATTAATTCAA 89383 37 100.0 35 ..................................... ATATACTTTTATTTTTGATGCACTCATAAAAGAAG 89455 37 100.0 36 ..................................... CTACATTTTTTAAAGTTAGACTCCAATAGTTAGTAT 89528 37 100.0 35 ..................................... ATTTTTTTCACACCGACTGAAGCAGCAATTTTAAA 89600 37 100.0 42 ..................................... CTCCCTAAAGCAATCTTACCTTTGTTAGCTGTCTTTTGCCAG 89679 37 100.0 36 ..................................... TTGTATGAGTAACAACACCTATCAAATTAATCTTGT 89752 37 100.0 38 ..................................... ATACTCACGCAGGCTTGATAACTGGTATCAAGGCAATG 89827 37 100.0 37 ..................................... CTCACGATGAGAAAGTGGAGAAGCAAGCCCGTGCTAT 89901 37 100.0 35 ..................................... TTACATTCATGCTTGTAAACTTGTAAAAGAATTAA 89973 37 100.0 34 ..................................... GTTCAGAAATTTTATCCTTAATGTTTTTGTTTGG 90044 37 100.0 37 ..................................... AAGAAGAAACTCATTCCATTAACAAAGTTAGTCCGGC 90118 37 100.0 37 ..................................... TATGAGATGGAAACATCTTGTCCTTTAGCTAATTCCT 90192 37 100.0 38 ..................................... CAGAACGATAAGTATAAGGCTGGTGGTCATATAGTACC 90267 37 100.0 35 ..................................... AGAGTTTTTATCAGCATCAAGCAGCATCCCAAATG 90339 37 100.0 41 ..................................... ATTCCTTTATGAGTGATTAGCGATCGCTGAGAACTTCAGAG 90417 37 100.0 34 ..................................... AATTAAAGTTCTCAGCTTTAGCTTGGGCAATAAG 90488 37 94.6 0 .....................AG.............. | ========== ====== ====== ====== ===================================== ========================================== ================== 26 37 99.8 37 GTTTCCAAAGACTATTACCCCGCAAGGGGACTGAAAC # Left flank : TCTATTTGATTATTTACGACCTGCCTGATAACAAAGCTGCAAATAAACGTCGCACTCGCTTACATAAAATGTTGTCTGGTTACGGGAAATGGACACAATATAGCGTTTTTGAGTGTTTTTTAACAGCGATACAATTTGCAACACTCCAGACCAAGATAGAAAAACTGGTTAAGCCTGAAGAGGATTCGGTACGATTGTATATACTTGATGCGGGTGCAATCAAACGAACAATTACATACGGATCTGAAATCCCTCGACAAGAGCAAACAATAGTTTTATGATTATGTAATCAGCTTGATGGATGGCAAGCCGAAGCGAGGGCTAAAACCCTGGGCATCTGCCAAAATCGCCAGAACCTTGACAAGTAAATAATTACAGCGTTTCAAAAATTCGGGAAGTTGCAAATTACTCGCAATAAGAGCGGCTGAAAATGACCTTTTTTTTCGATCCGTCAAAAACCTTCCCAGGAAGCTTGCTCCGTAACAGTTTCAGATGGAGCG # Right flank : CTTCAAACATTAATTGCGATCGCAGTTGTTCAAATTAGTTTTCGACAATTAACTCATCGCCAGGGGAATTAATTGTTGTTTGCCTTTTATTAAGTCAAAGAGGATTGAAATTGCGTACAATATTGAGCATTATTTGTGAAGCCCTAAGCAATGCCAAGAGCAGCATCATCTACTAGTGGTAAACCAAAGCCAAAGCAAAAATCTGTTGCTTCTGTTGTCACATGGGCAGATGAGACAGAATTAGTGGGATTAGTGTTTGAACTGGAGTCAACTGCTTCTGCTTTGCTTTATTCGCAGTACACAATAGGACTGCACGCGTGGTTTTTGGAGCAAGTACGGCAATTTGATCCAGACCTTTCAGCTTATCTTCATGATGGAGAGTCAGAAAAACCCTTCAATATTTCAGCGCTGTCAGGTCAACTAATTGCCAGTGGCAAACAACTACGATTAGAAGGGAATCAAATATACTACTGGTACGTGAACGTTTTATCTCAACGGGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAAGACTATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 92165-93814 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSY01000122.1 Nostoc sp. ATCC 53789 scaffold21.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 92165 37 100.0 38 ..................................... GTTCAAATGCTGTCTCTTATCAAAATCAAGTTCGAGGA 92240 37 100.0 35 ..................................... TAATAGCATTGTTATGAATATAGAGAAAAAGAAAG 92312 37 100.0 37 ..................................... ATATCTGAATTTTTCGAGACTGGGAATATTCATAACT 92386 37 100.0 34 ..................................... AATTAACTGGTTGCGCCTGCTCAACAACAATCGA 92457 37 100.0 36 ..................................... ACCACCGGAGGCAGAAGGAAATCTGGTGATCGTATC 92530 37 100.0 36 ..................................... TAACTGCTCTGCCACTTCCCGATAGTCATCTGCGAT 92603 37 100.0 37 ..................................... CCCAAGAGAATATTGACGCTTTAGTTCATCTAGAAAG 92677 37 100.0 37 ..................................... ATCACACGCTTGGTGATAACGCAATACTAGGACTACA 92751 37 100.0 37 ..................................... TCATCTTGAAAGCCACTTACCAAAGAATTGGATTAAG 92825 37 100.0 35 ..................................... CTGTACTTCTCTAAAAAGATGGAAATTCCAGGTGG 92897 37 100.0 35 ..................................... GCTAGAGGCGATCGCTATCTATACTCGCCTCCAAC 92969 37 100.0 37 ..................................... GGGTTATTAAGCTTTACACTACCCTTTCTAAAGCCAT 93043 37 100.0 38 ..................................... ATTTTTATCGCTCAGATGCACCATACAAAAACTTACTG 93118 37 97.3 36 T.................................... TTCAATCCACGCTTTCATTATTCCAACAATTTATGC 93191 37 100.0 35 ..................................... CTACTTCGGTTGTCATAGTGTGTTAGTCGTTTTTG 93263 37 100.0 37 ..................................... GTTCCGTTACCCATGTCAATTAATGTCCAATCCCTAT 93337 37 100.0 36 ..................................... TTCGTAAGCATACCCTCTGCAATCAGACAAAGGATG 93410 37 100.0 36 ..................................... CAAATCAATGGTTGTCTGTGCCTGTTAATAACATTA 93483 37 100.0 37 ..................................... TCAAATTCAATTACTTGATGAAACTCACCCAAGACAG 93557 37 100.0 35 ..................................... GCAGCAGTAGCTCGCTTGGATCATCCGGCAGTTTG 93629 37 100.0 38 ..................................... ATCATTTAGTTTGATTCTAAACTTTCCAATTGGGCTGC 93704 37 91.9 37 .......TTG........................... GAAAAAGCGGCAATGCGATCGTTTTCGTTAGAAAAAT 93778 37 89.2 0 .......TTG................A.......... | ========== ====== ====== ====== ===================================== ====================================== ================== 23 37 99.1 36 GTTTCCACCAACCAAATCCCCTCACGGGGACTGAAAC # Left flank : GAACTGATAAAATTGCAGTTACCTGGGCAACGATTTTGGCGCGGCGGGAGATGGGGGAATCATTGAAGGCAATCGCCGAAGATTTAGAGATGCCGATCTCGACCGTGAAAACTTACGTGAAATTAGCCAGGAAATCGCTCAAACAAGAAAGTAATAGCTGAAAAAAAAGTTAAAGGTTAAGAGTTATTTGCATTCACTCATTACCAGGAAATCGCTCAAACAAGAAAGTAATAGCTGAAAACCTTCGCTTATGGACAAGGGTAAGTAATTATCTTATGATTAGGTAATCAGCTTGATGTTTTGGCAAGTCGAAGCGAGGTCAAAAACCCTGGGGATCTGCCAAAATCGCCAGAACCTTGACAAATAAATAGTTTCACAGTTTCAGTGCTAAGGAAAGTTGATAATTAGTTGCAATAAGAGCGGCTGAAATCGACCTATTTTTGAGGTTTGCCAAAATGCTTCCCAGGAAGCCTGCTCTGTAAGGGTTTCAGCAACGAGCA # Right flank : CATTCGGATATTTCCTCACTAAGCGATCGCCTATAGGCAGTCTCCATTGACCAAATCCCCAGCCGCGATCGCTATGTTCAAAATTTCTTCAAAAGTGAGAGAATTCGAGAATTACGCTATTTTCGGCTATTGGCTAAGTCTTCATTGTGGGATGGGTATCATGTTCCGTAAAGGCGTTTGATCAAGCGAACGCTTAACCCTGTTATGTCACTCTCGGAAAACAATAATTGAAGCAAGATTCTGAAACTTTTATTGAGTCAAGCTTTGAGACATTATTTTCTAACAGAAACTAAAATTTCTAGCCAAAAACTGAAAAGTAAAGCTCTCAAAGGCTTTCAGGCATTGGCTTCTCCCAAAGTGACAGAACAGGGTTAAAACACCCAAGGTTTTTCCTCAAATAAACACTGGTATTCTTTTAGAAATTATGGCTACGGTTATTACTGAGTTACTTCAGTGCTGATGAGCTATTAAAAAATTTAAATTATACAAATTAACATCCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACCAACCAAATCCCCTCACGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 31262-30457 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSY01000141.1 Nostoc sp. ATCC 53789 scaffold27.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================== ================== 31261 37 100.0 35 ..................................... TTGCCAGTAGAGCCAGCCGATCTAGAAGTTGATAT 31189 37 100.0 34 ..................................... CTTATATATATAGATGTGAATTACATTAAGATGC 31118 37 100.0 32 ..................................... TGGTACATGGAAAAGGGATTGAATGGTTTCCA 31049 37 100.0 37 ..................................... TTGCAGTTTTAAAGCCTCTGGTTCAGGCGATTCTTAT 30975 37 100.0 34 ..................................... ATGAAAGATAATTATGCGAGAGTTGTTGCTATTT 30904 37 100.0 35 ..................................... TTCCAAAAGACATTATTGAAACAGTAATTAAACCT 30832 37 100.0 37 ..................................... GAATTATCTAAGCATTATTCAATCTGTGGTACACCAA 30758 37 100.0 35 ..................................... ATTTGTAATCCCTGCCCTGCTGCGATCGCAATTTC 30686 36 86.5 158 ............................C.A.-.C.G TTCAGTTAAGCATCTCTTTCTTCTCTCTGCGTTCTCTGCGCCTTGGCGGTTCGTTAAAAAAACGACTTTGGTAACAGAGTTTTAGCCTTAACTGAACCGTATTGCCCTATCAGGGATTGAAACTATTCCAATGCGAAAACCTATCAGAGGGATACGTA 30492 36 86.5 0 .........A..C...........T....-......T | ========== ====== ====== ====== ===================================== ============================================================================================================================================================== ================== 10 37 97.3 49 ATTGCAATTCATTAAAATCCCTATCAGGGATTGAAAC # Left flank : TTCGATTCTCAAGTCTTATGGACAATGGATGCAACTGAGTGTGTTTGAGTGCGATATCACTCCTACTCAGTATGCTAAACTGCGATCGCGTTTATCTAAATTGATTAAACCCGATACCGATAGCGTTCGTTTTTATTTTCTCTGTGGCTGCTGTCAGCGAAAAGTCGAACGTATTGGCGGAGAACAGCCACGAGACGAAACAATTTTCTTTGCTGAGTCCCCTTCTGGCTAGGTTTCTGTATTTCAAATGCGCGGAAGGGTAGGTGTACAAATTCCACAGGTCTAAAAAAGTGCTTCTATCCCAAGTACAGTAAGGCTTTCAACCCATTCTTTACCTAATCATCATCCGCGCAATCTCTGAAATGCTTATCAAAATACGATTTCAGCCTTTAAATTTTCTTGGCGCTCTTTCCAAACGAATTCTCTAATGCTATGATTGCCCTTGAATCGCGCAACCGTACCTTGAAAACTAAATACAGCTTGGCTTTCAGCGTCCCGCT # Right flank : AGTTGCAACGGCTCCCTGTCCCCTGTCCCCTGTCCCCTGCCTCCTTTAATTTAGCTTACCGATATAGCCAAACACGCAAGAGTGAAAGCAGTTGTTCAGTATCTACGGGTTTGGTGATGTAGTCTGATGCACCAGCTTCAATACACTTCTCGCGATCGCCTTGCATGGCTTTAGCTGTCAGTGCAATAATCGGCAAAGATTTAAATTGCTCGTTTTGGCGGATTAAGCTTGTTGTTTCGTAACCGTCCATTTCTGGCATCATTACATCCATCAAAACGACATCAATATCTGGTGTATTTTCTAACACGTTAATCCCCTCTCTGCCGTTTTCAGCGTATAACACTTGTATTTGATAACGCTCCAGCATACTTGTCAGCGCAAAAATATTACGCACATCGTCGTCTACAATTAGCGCTTTCTTGCCAGCGAGTAAGTAATCTATGGAATGCAATTGTTCAAGTATTTGTCGTTTGGGTGCAGGTAAATTTGCTTGGACTCGG # Questionable array : NO Score: 7.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:-1.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 30109-29904 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSY01000144.1 Nostoc sp. ATCC 53789 scaffold3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================== ================== 30108 25 100.0 35 ......................... CGCTAGCTGGGCGGACATCACCAAACTCCCCTGTG 30048 25 92.0 35 .................A..A.... CACTAGCTGGGCGAACGTTGCCGTAAGACGATATA 29988 25 100.0 35 ......................... GACTGGCTGGAATAACGTTGCCGTAAGACGCTGGG 29928 25 96.0 0 ........A................ | ========== ====== ====== ====== ========================= =================================== ================== 4 25 97.0 35 TCTGCGGGGTCGCCGTAGGGGTCTT # Left flank : TATTAAATCAGTCGCGGTTGTTGCCTGTAGCGGCATATCTGCAAGGTGAATACGGTTTAGAAGATGTTGTAATTGGTGTTCCCTGTCGTTTGGGATGCGGTGGAATTGAGAGTGTATTGGAATTGACACTCAGCGATGAAGAAAGAGAGGGTTTGCATACTTCGGCTCAATCTGTGCGTCAAAATATTGAGCGATCGCAGGAAATTTTGGCTAACAAAAATAATTCCTAATTCGTAATTCAACATGTCATATAGTGCAATACGGTTCGGTTAAAGTAAGAGACGCGATAAATCGCCGTCTCTACAAAGGACTGATTATTGTAAAGACGGCGATTTATCGTGTCTTTGTGGATAATTTATTTTTTGCAATTCCCTTACTACATAAAACAGTCCCTCTCCGAGTCGGAGAGGGACAGACTTGAACTTTAGTTCAAGGCAGGGAGAGGTTTGTCAAACTCACCAGAATATTTGTGCCGTTCGCGTTAACGACGGTAATCCTCA # Right flank : CGCTGGCTGGGCGGACATTGCGATCGCGGAATTCAGCATTTTGATCAGCTTGATCGCTGTTCGATCCCAAGAGTAAATCTTTCGCCTTTCGGAAAAATTCATTTACCATAATCTAGTCTCCTGATTTAAGTTCGTGTTTCCGACGTGCGCGATGGCGTTATCCTCCGGGAAACCCGCTTTATATTTACACACGCTTCGCGGATCTAGAGTGCTGGTGCTGCGGATGAAGTTATACCAGTTAGATCGCGACCTGTGGCACTCCGGTTATAGCCCTGGAATTCCCGATACTTTTGTGCTTCAGATTCGGGTACTCGGATTCCTTCTGCTGGTGGCGTTACCCAGTGAGCGCGATGTTCAGCATCGCGGTAGTATACGCGCCCGTTCTTGGAAAGATAGTACTTACCTTGCGCTCCTTCTTGGGGAGCATTCTTATGCTGGTTGTACATGTAGTAAAGTGCCGCAGCCCCCGCCAAAAGTGCCACTTTTTGACCTGTACCCAA # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTGCGGGGTCGCCGTAGGGGTCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 4417-3080 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSY01000164.1 Nostoc sp. ATCC 53789 scaffold48.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4416 37 100.0 36 ..................................... TCGATTTGGGGAGGCGCGATATCGCCACCACTTCTA 4343 37 100.0 37 ..................................... GTTGCAGATGCGATCGCTCCTCCATCACAATGTCCCC 4269 37 100.0 33 ..................................... TTGAATTTCTCCTCTATTACCTTTGATTGTGGC 4199 37 100.0 37 ..................................... TTTGGTCGTCATTGGATATGATGAAACGCCACGAAAA 4125 37 100.0 35 ..................................... AAGGAAATTGCAGTAACCTAAGCAGGCTGTATCAA 4053 37 100.0 34 ..................................... CTGATTATATAGCTCTACCACAGACCAACTTTGG 3982 37 100.0 36 ..................................... GTAACTGCTGTTGTTGATATAGTGAACCCATAAATT 3909 37 100.0 35 ..................................... TGTATACATTCTTACCATCCGGTGACTTACCTGTG 3837 37 100.0 36 ..................................... GAGCATCTATATACGGAAAAGTAGAGGAAGGCGCAT 3764 37 100.0 39 ..................................... GCCTAGATTTATCAGGGACTTTGGCGGGGCAATCTTTGA 3688 37 100.0 33 ..................................... TTATTCCACCACCACCAAACGTTACACTTTTTA 3618 37 100.0 33 ..................................... AAATAACAGCTACACAAGATGGAGATGTAGTTA 3548 37 100.0 37 ..................................... TAATATTTAAACGACCAATAAGCTTCTTTGATATACC 3474 37 100.0 35 ..................................... AATTGTTGTAGCATTTGGGTAAGCTTGAAGGAAAA 3402 37 100.0 34 ..................................... GCCAAAGCAATTAAGGTGCCGGAGCGATCGCCCC 3331 37 100.0 35 ..................................... GGATTTGACAATACAGGCATTAGAAAATCTTTACA 3259 37 100.0 35 ..................................... ACTCTGAAAAGTAATTAATCGCTATGGAATTACAG 3187 37 100.0 34 ..................................... AGTGCTTCACTTTTAGCTGGTGTGGCTATCAACG 3116 37 91.9 0 .......................C........T...G | ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 99.6 35 ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TATTTCTTTCATCATCTCTACCTTAAAATTGGCGGAAACTTGATTTTTGGTTATCAGTACAGTAGTACGACAACAAATATTACAATTTATGAATCAGTTTACCGTAATATTTTAGATTCGTTTGCTGTCCAAATGTTTTTTCTGTGTGGCTCTTGTCAGAGAAAAACCGCCTGTATTGGCAAAGAAAAGCCACGGGATAAGCAATTTTCTGTACTGAGTTACTTTCTGGCTGGGTTCTCATATCTCAAATGCGCGGAAGGGTAGGTGTAGAAATTCTAAAGTCCCCAAAAAGTGCTTCTATTCCAAATACAGTAAGGCTTTCAACCCATTAGTCACCTAATCCTAATCCGCGCAATCTCTAAAATGCTTACCAAAAGACGATTTCAGCCTTTAAATTTTTTGGCACTCTTTCCAAACAAATTCTGTAATGCTATGATTGCCCTTGAATCGCGCAACTGTACCTTGAAAATTAAATACAGCTTGGGTTTCAGGCTCCCGCT # Right flank : CAATGAGAAAAGGGTGGACAAGTAGCCCACCCTAAACCATTATTTAATTAGTATTACTTGACGGGTGCTTCAGTAGCAGACTTACCAACAAGCATTGCGGTATTTTCGTCGCTTTCGAGGATACCGAATTCAATCAACAACTCTTCTAACTCTTCCATCTCAATAGGAGTGGGGACAGTGAGCTTGTCGTTGTTGATAATCTTGGTAGCCAATGTCCGATATTCGTTACTTTGATTACTATCAGGAGCGTACTCGTTAACAGTCATCCGGCGCAATTCTGCGTGTTGAACAATGTTGTCACGAGGTACATAGTGAATCATTTGGGTGTTCAAACGTTTTGCCAAGGTTTCGATTAAGTCGATTTCCCGGTCAACGTTACGGCTGTTACAAATCAAACCACCCAAGCGCACGCCGCCAGTGTGAGCATATTTGAGAACACCACGAGCGATGTTGTTAGCTGCATACATCGCCATCATTTCACCAGAGGTAACGATGTAGAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 87753-88587 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSY01000166.1 Nostoc sp. ATCC 53789 scaffold5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 87753 37 100.0 34 ..................................... TAAAGTTTTCATTACTAGAGTTTATTTCACAAAA 87824 37 100.0 36 ..................................... AAGTGGTGAAGTGAAAACCGATTGAGCCTTAACACC 87897 37 100.0 36 ..................................... TAATTCAAAAGCACATCCATCAGTGATTGTCTGAAA 87970 37 100.0 34 ..................................... TGAAAATTCGAGCGATTGATGAACCAATGGGGTC 88041 37 100.0 34 ..................................... GCATTTTTATCTACTGTAACTTTTAGAGATTGGA 88112 37 100.0 35 ..................................... TGAACTATCAACTTCACCACCCAAAAAGGGATACA 88184 37 100.0 43 ..................................... AGCCGAACCATGAAACGACCCGCCGCTAAAAATTCCCTTACTT 88264 37 100.0 35 ..................................... CCTGTGGGGTAATCCAAGGACTAGCCACACCCAAA 88336 37 100.0 35 ..................................... ACGTGTATAAGTTACTTTTATTTTCCCGGCTTTAA 88408 37 100.0 35 ..................................... TTGAGTGACCCAGCGAGGACATTCAGGATTATTCG 88480 37 100.0 34 ..................................... AGTCTACACTAACACTTCTACCATATCCCCTATA 88551 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== =========================================== ================== 12 37 99.8 36 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : CCCCTTCTTTTTCGATCCCAATTTCGATGTAGAAGTGAAGCCCATCGAATTAGATAATATAGTAGCGAATGACAATATAAGCGATCGCTGGGATAACGCTAACATTCATGATTTTCGCGGAACTTATGGTGATTACGTGTTAAATAAGGTGTCTAAGGTTTTTCCAGAATTGCGGCGAACAGTATTATAGAGTTTAAAACCATTTATTCTTTGCTGAGTCACCTTTTCGTTAGATTCCTCTAGTCAAATGCGCGGAAGGGTAGGTGTACAAATTTTACAGTCACCAAAAAGTGCTTCTATCTCAACACCAGCAAGCATTTCACCTCACTAATCACCTTATGCTCATCCGCGCAATCTCTGAAATGTTTGCTATAAATGGGTTTTAGCTTTCAATCTGTCTCGGCACTCTTTCCAAACGAATTCTCTAATGCTATGATTGCTCTTGAACCGCGCAACCGCACCTTGAAAACTAAATATAGCTTGGGCTTCAGGCTCCCGCC # Right flank : CTAGCTGTTTCTACTTTTTGCAATACCTTACGTTCTATATTGAAACCCAAAAATTGCTGGTAATACTGGGGAGGGAAGCAAAAATGTATGAGTCAATGGGTTTATAATTGGAAACTGTGACTCAGCGAGAAGTTTGCTCTAAGGCATCCCTGGCTCAAATATCCTTCCAAGGAAAGATGCCAAGGGCGAACGATGACAACTCATAATTGGAGCGAAGCGACTGGTGGGCAGTTTATTACAAGGAGTTAACCTGTACTTAATTGGCATGATGGGCGTTGGTAAGACGACAGTAGGGCCCTTACTAGCAAAACATCTGGGTTATGGGTTTTTGGATCTTGATGGTGTCATTGCCAAAGCAACGGATAAATCTATCAATCAGTTATTTGCAGAAGAAGGTGAAGCAGGGTTTCGCCAAATAGAAAGTGATGTACTTTCACAAGTTTGTGCTTTTACAAAATTGACTATAGCAACCGGTGGGGGTATTGTATTACGGCGAGAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //