Array 1 29463-35116 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSFN01000005.1 Bacteroides intestinalis strain AM43-4 AM43-4.Scaf5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 29463 47 100.0 29 ............................................... TAGCGGCAACCTTGTAGAACGCCATTTCC 29539 47 100.0 30 ............................................... GGAAAATGTTCTGAACGTCTTCACGGGTTA 29616 47 100.0 29 ............................................... GGGGATAGGGATCGGAGAACTCCAAGAGC 29692 47 100.0 29 ............................................... GAACTTCTCTACGATAGCAACGCAATTAT 29768 47 100.0 30 ............................................... AATAACCTAATGAAGAAATAAAAATGGGAA 29845 47 100.0 29 ............................................... AAAGAACCGAGACGGGAAATCAGCCTCAC 29921 47 100.0 30 ............................................... TGGGAGAACTGAATAGCTGGTTTTATCTTC 29998 47 100.0 30 ............................................... AGCGCAGCTTACTTCCCCTGACCTCAATAA 30075 47 100.0 30 ............................................... GTCAGAGAAGATGGTTTTCACTTTAGTGAC 30152 47 100.0 30 ............................................... ATCTCGGCATGTATATTGGAAATCCTGAAG 30229 47 100.0 30 ............................................... GAGGGTGTAAGTGATGATATCACTAATAGA 30306 47 100.0 29 ............................................... TTCTGAAATCGTCATTGATAGTATATATC 30382 47 100.0 30 ............................................... ATCCTGTGGACTCTAACTCTTTTAATTTTT 30459 47 100.0 30 ............................................... AACCTTATTAGGACCTAGGAAAGTATCAAT 30536 47 100.0 30 ............................................... AGAGATGGCTATGGATGCATTAATAGGTAT 30613 47 100.0 30 ............................................... GGCTTTACGTATTAATATCATGTCAAGTAG 30690 47 100.0 30 ............................................... ATATGAGCAAAGGAAAAGAAGTGAGTGTAC 30767 47 100.0 30 ............................................... TGGAAAGATAGAGCTTATTAGCCGGATCGT 30844 47 100.0 29 ............................................... TGCTGCTTAACGATGGCGCGTAAATAAGT 30920 47 100.0 30 ............................................... TGTAGCAGTTGCGGCCGATGAAGCATCAAA 30997 47 100.0 30 ............................................... TGATTATCCCGGTAATATTCCAGTTCTTCC 31074 47 100.0 30 ............................................... GAATTTGTGAGCAAACATAACGCTAAACAG 31151 47 100.0 30 ............................................... GAAATGAAATTCCCCCATGGCATAAAGATT 31228 47 100.0 30 ............................................... CAGGTAAACCAAGTATGCATTCCCATAATT 31305 47 100.0 30 ............................................... TTCATCAGGAACAACTAATGCATTGGGTCA 31382 47 100.0 30 ............................................... AGAATATGGGTGTCAACTATGTAGATAATG 31459 47 100.0 29 ............................................... AAGCTTTTGAAATTATTGTTGCTAATGCA 31535 47 100.0 30 ............................................... TTCGTTACGCATTTCCAGAACGTCCAGAAC 31612 47 100.0 29 ............................................... CTTGACATTATCCCTCGTCCAGTTGTTAA 31688 47 100.0 30 ............................................... CTGAAACAGAGTTGGCAGGCTTTATTCAAG 31765 47 100.0 30 ............................................... ATCCGTTTATTGGCAATCCGGATTTATCGG 31842 47 100.0 31 ............................................... ACCAAGAGGATTGAGGAACTGTAATCCCGGC 31920 47 100.0 30 ............................................... AGGAAGAATGTTATAAGCAATCAACTTCTT 31997 47 100.0 30 ............................................... ATAATTCAGTAGATGAATATTGGGATAGGT 32074 47 100.0 29 ............................................... ATAAGCTCATTAGGGTCATTTATTAACTC 32150 47 100.0 30 ............................................... GTACAAGAGGTAACATTAGAACAACCTCCT 32227 47 100.0 30 ............................................... AAGGGTGATGCAAATAATTCCCGTAACCGT 32304 47 100.0 30 ............................................... ACCATTACACCCTCGTATTCACCAGTTCCG 32381 47 100.0 30 ............................................... AATATCAAATGTGGATTCGCTTCAGATTCG 32458 47 100.0 29 ............................................... AGATAACCGAGTAAATCCAATTCTGTAAC 32534 47 100.0 30 ............................................... CAGTAACATGCAAAGTGCCCTTACCTCACT 32611 47 100.0 30 ............................................... CATTTTTTTTCATTATATTATACTTAGCTA 32688 47 100.0 30 ............................................... CTATAAAGCCACAAACCTCCGATTATCCCC 32765 47 100.0 29 ............................................... CGGTACGCCTATAAATCCCATCGGCTACT 32841 47 100.0 30 ............................................... TTTAAAGCCTCTGCAAACTTCGGAAGTACA 32918 47 100.0 30 ............................................... ATGTAATCCACTGTGCGAACTATGCTTGAA 32995 47 100.0 30 ............................................... TGACATGCTTCTCCAACCGAAAGGTAGAGG 33072 47 100.0 29 ............................................... CAAAGAAATAATTGAAGTAAAGCCAATGT 33148 47 100.0 29 ............................................... CAAAGAAATAATTGAAGTAAAGCCAATGT 33224 47 100.0 29 ............................................... CAAAGAAATAATTGAAGTAAAGCCAATGT 33300 47 100.0 30 ............................................... TAGAGGAATTAGGTGATTGCACATCAGTAA 33377 47 100.0 30 ............................................... CAAATGAGTATGATACAGGAATAACAATTA 33454 47 100.0 29 ............................................... ACATTCTACAAGAATTATATGACGCAATC 33530 47 100.0 30 ............................................... CTCACTATGTCGGCGGTTCGAGTCCGCCCA 33607 47 100.0 30 ............................................... CTATTGTCAATAGTGTACTGATAGCCACTT 33684 47 100.0 30 ............................................... AACAGAAAGCCGCAGCGGCAGAAAACAATG 33761 47 100.0 30 ............................................... ACGTTCATATTCCAGTAATGTTTCAAGAAA 33838 47 100.0 30 ............................................... GGTAATACAGGAGGTATCGTTTTGAATGAT 33915 47 100.0 30 ............................................... ACGCTAATTCATAAATTCTAATTCACAAAA 33992 47 100.0 30 ............................................... GAGAATATATGTTGAGCGAAATTAAAGTAA 34069 47 100.0 30 ............................................... GTAATCAATAAACTCCAGTACTGACATCGA 34146 47 100.0 30 ............................................... AAGATCAAGAATGGATCGAAGAAGGCGATT 34223 47 100.0 30 ............................................... ACAGCCGCCACCGCTATGCGTCTACGTTGC 34300 47 100.0 30 ............................................... AACTTGATGAAGTTTAGTACTAAAGCTAGC 34377 47 100.0 29 ............................................... ATGGTGTATTAGTACCTATACCTACTTGT 34453 47 100.0 30 ............................................... AAGGTGGCGTAGGAATGAGTTGCTATGATT 34530 47 100.0 29 ............................................... ATGATATAATAGATGCCGAGGTAGTCGAA 34606 47 100.0 30 ............................................... ACAGGCGTTGTACATTGTACAGGATTTAAC 34683 47 100.0 31 ............................................... TTAAAAACGAACAAGCATTCATTGATTCACT 34761 47 100.0 30 ............................................... GGTATCTCGCAGGTGAAAACAAAGTTTTAC 34838 47 100.0 30 ............................................... GAGAAAAAGCCGCAGGTATTAAACACTTGC 34915 47 100.0 30 ............................................... ATAGACCCTGTAATGTGTTAATGTGTTGAT 34992 47 97.9 30 ...................C........................... TAACCCATATATGCTATTTCACCCAGAATA 35069 47 89.4 0 ...............................TT...T......T.A. | T [35096] ========== ====== ====== ====== =============================================== =============================== ================== 74 47 99.8 30 GCTGTTGCTTATCCTACAAAGATACTATTTTGAAAGCGAATCACAGC # Left flank : CTTCACTTTATAAATGTTTTAGTGGAGAGGTGCGTCGTATTGCCTATCCTGAGATGTGATGGATCGTTTTAGTGAATATCGTATTATGTGGCTATTGGTTTTTTTCGATTTGCCTACTGAAACAAAGAAAGAGAAAAAGGCGTATATTGATTTTAGGAAAAATCTTCAGAAAGATGGTTTCACAATGTTCCAGTTTTCGATTTATGTGCGTCATTGTGGTAGTAGTGAAAATGCGGAAGTACATATGAAGCGGGTTAGGTCATTTTTACCGGAACTTGGAAAAGTGGGAATTATGTGTATAACTGATAAGCAGTTTGGTGCTATCGAACTCTTTTATGGTAAGAAAGTGCAGGAAATAAATACTCCAGGGCAACAACTTGAATTATTTTAGAATTAAAAAATCCCGCTATTAAACGGGATTTTCTATTACAACAGCATCTGTTTTTTATATTCGAGTTTCTACTGTAAATGCTTGTAGTACAGTCTACTGCTGGTGATGA # Right flank : CCATATCCGGCTTTAGCTGATATTTTGCATCTACTATTATTTATCCTACATTACAAGCATATCCCTACCTAATCCTAAATATCATCCCCTCTCTTTATTAACGAATTGAAGAGAGAAGCCCCACTTCCTTTTCCGTACCCCTCCTCTCTTCAATCCCTTAATCTCACCTATCTATTTTATCTTCTCCCTAATCTTCGTCAGATACTGCTTCATCCCTTCCGCATCTTTCGTACTGATAATTTCCAGCAAATTCTTTAGCTCCAGACGAATATTTTCCACTTGCGAGGGAGTGCGCGGATTAAAGAGAATTTCCTGAAGCAAGTAATCATCCTCACTCAGCAAACCCTTGGCAATAGCCATATGCTTCTTGAACGTAGTACCCGGAGCCTCCTGGTGCTTCATCACCGCTGCAAAAACAAACGTAGAGACGAAAGGAATAGACAGAGAATAAGCTACCGTCTCATCATGCTCGTCGAAAGTATATTCGAAGATATTGAGGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTGCTTATCCTACAAAGATACTATTTTGAAAGCGAATCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.70%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //