Array 1 2300-2467 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATJW010000043.1 Listeria valentina strain CLIP 2019/00642 N43_20349nt_41.472672, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2300 36 100.0 30 .................................... CTTACTGTCCGCATCTTGCCTGTTTTTGAT 2366 36 100.0 30 .................................... AGCTTATCTTGATATGCGTGCTAGCGATCT 2432 36 83.3 0 ...........A.........A.....C..GGT... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 94.4 30 GTTTTAGAGCTGTGTTATTCTGAATGGTTCCAAAAC # Left flank : GTGAGCTTATTGGATTTGCGAATTTTATTGAGTTAGATAAAGGGAAAAGTGAGTTATCGGCTTTCTATATTCTTCCGAGTGAGAAAGAAAAGGGCTACGGAACGCAAGTTTTAGAGGAAGGAATCCATTTGTTTAACTTACCGCTGCCGATGTTTGTGAATGTGGAAAAAGGAAACGATTATGCCTACCAGTTTTACTTGCAAAGAGGCTTTGTTGAAACGGAGCGCTTTGTTGATGACTTTTATGGATATAAATTAGATACAATTCGGATGCATTTGACGCACAATATTGAAGAAGAATTGTGACAGTTTAGAAATGCCAAGTGGAGTCGCGCGAAAAAAGGACAATCTTGGTAGAACCTAACTTGTATTTTGAGTAGTAAAGTATTATGATGTTAATGAGCCTAAGTGGAGTCAGGCAAGAAAAGGGAACCATCAGAATTGAAGTCCTTTGCTAGGGACGAATAGCGTGATTACGAAATTTCGGAAAAACTTTCCGAG # Right flank : CATAACTAAAAAAGAAACACCTTGTTTTTGAGGCAGGGTGTTTTTCTATGTGCTTTGCTGAAAAATTCACAAAACGTTCAAATCATCTATGTTGTTCTTGTGCTAAACTGAAAGAATGATAACTAAAAAGGTAACTTAAAATGAAAAAATACTTATAAAGCAAGTAAAACTATAAACAGAAGCGCTGGGCAACTTGCCCAGCGCTTCTTGTTTGGCATCAAAAATGGACTTTGCGGAACTTGCCTGGCGTTGTGCCTGCATTTGCGCTAGCGAAGGCTTTGATAAAATGCGTGCTTGAAGAAAAACCACATTGTGCGCTTATTTGTTCGACCGTCAAGTTGGTTTCAAGAAGCATTCGCTTGGCTTGTTTGAGTCTATGTGTAAGCAAGTATTGATGCGGACTTTCTCCGGTGTGCTTTTTGAAAAGTCTAGAAAAATGATACGAACTGAGGCTCGCTTCATGGCTTAATCTTTGGATGGTTATTTTTTCGTAATAGTTA # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTCTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 15448-15214 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATJW010000020.1 Listeria valentina strain CLIP 2019/00642 N20_39314nt_44.675918, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 15447 35 100.0 31 ................................... CTTTAATTCGATTAATTTGCTTTCTCTTGTG 15381 35 100.0 31 ................................... CTTTAGTAGGCGTGGTTCTACTTTTCACGCT 15315 35 97.1 31 .......T........................... TAAAGTGGAGCGGTCAAAACATTGAAATAAT 15249 35 88.6 0 .......................AC.C..T..... | T [15216] ========== ====== ====== ====== =================================== =============================== ================== 4 35 96.4 31 GTTTTAGAGGTATGTTATTCTGACTGGTTCCAAAA # Left flank : AACGTGAGACTAGTCGATTCCCCATGTCCCCTATTCACTAAAAGTAGTTCGTTAATTCCGATTTAATTATATACCATTTAGATATTTAATCAATAACCCTATTGCAAAATAATTTTAATTTGATATAATAGTGATGTTGGAATTATTCAGAATAACATAGCGAGTTAAAATAAGGCTTTGTCCGTAACCAACTTTTAAAGTAGCGCTGTTCTCGGCGCTTTTTTCATACCCAAATTTATGGAAAACTAAGGCAGGCTTATCTTTCATAGTAAGCTCCGCCTAGTTACTTCCTTTCAATTTAATATTTCACAGTTTCATGCTATTTTAGAAAAGCTTATTTTTTAGCAATCAGAATTTGGTATAATAGAAGTCTTTAGAATCATAACTTTATTTACATATCTTAATGGAACGACCAAAAAAAGATAGAAAAGAACCATCAGAATAGAAGTTCTGCTAGGGACGAGTACTGCGATTACGAAATGTCGGAAAAACTTTCCGAG # Right flank : GCAACTCTACTTAATTTCATTTTTTAGAACACGCAAACTCTGCGTGTTCTATTTTTATACATCGGTAAAGACTCAGTACTCAAAAATCTTCTTCATCCTTCAAACACAGCAGCGATTTCGCCATCAAAAGTCAAAACTAGTGCTTTTGCTTCTTCTTCGAGTGAGAAATTTACAATAGCAGGCGGTGTAAAGATTTTCTTTAAAAGTGATGTCCGTTCTTGCCTTTCAAATTAAATTTTGGGCTCTTTTCCGTAAAACAAATAAATACGAAAATACTCATCTTGCTTCAAAGCCCGCCGAAAAACCAGATGAATATAATTTTTATCAAACATACTCTTCTCCTTTAGATGTAATAACCTTCTCTTTGTTCTTTCAATGCTTTTTTCCAGTCTCGTCTATTGTCAAAACCAATTTGGCGGCCATAAAATCTCCACAAAAAGATGCAAAAAAGTCTCCCCAAATTTTTCAAAAAAACGTTCTTTATGCACCAGTGTTTGATA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGGTATGTTATTCTGACTGGTTCCAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 19387-19554 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATJW010000040.1 Listeria valentina strain CLIP 2019/00642 N40_21368nt_33.724766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19387 36 100.0 30 .................................... ATAAGACCAAATCAAGTCTCGCTGATATCT 19453 36 100.0 30 .................................... GTTGTGATTAAATCAGCGAACAATGACATG 19519 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTATGTTATTCTGAATGGTTCCAAAAC # Left flank : CATTATCCCAAGAAATTTGTCCGGAAGTTGCTTCAATAAAGCCTAGAATCAAGCGAAAAGTAGTGGTTTTCCCAGCACCATTTTGACCGATAAGGCCTAAAATTTCGCCAGAATCGACTCGAAAAGACAAATCGTCGACTGCCCGTTTCTCGCCAAATGCTTTTGTAACATGTTGTAGTTCAAGCACCATATGTGTTCCTCCTTATTAATTGTCTGAATGTACTCTCCATTTTACCAAACTTCCTCGCCGATGAGTAACTTTTTTTGGCAGAAATTGAAGGAACTGTTCGAGAAGTTAGAAAAATTTATAATTAGTTTGGAGACTGAGTGTAGCTTGTAAGAAATGAATGACCAAATAGGAAACGGACTTGTTTTTTAACAAATAAAGCTATATGATGGGATCAAGAGAAATTTGGAATGTAGCACAGAAGAACCATCAGAATGGAAGTTCTGCTAGGAGCGAGTAGCGCGATTACGAAATGTCGGAAAAACTTTCCGAG # Right flank : CTGTGAGGCAATCCGATTTCCAAGATGCTTTGTTTTAGAGCTATGTTATTCCGAAACAAACTAAATAGCGGACAAAAACTTTGCCTCATTTTTTTGGATGGGGCATTTTTTATATCAAAGTGAGTGAGAAAATGGTATTTAGACAACTTAGAGGTTTTATACTAGGAGTCAAAAGGGCAATTGAAAGCTTTAATTCTAGTCATTCGAATAGTTTTAACACTGATTTTTGCCTATGTGATTAATGAGTTTATCATAGCTCCAATTGCAAATCAGGTTTTGCCAGGAAATAATAGTTCTATAGATATAGTAGTTGGATTAGCGAGTATATTTTTGGTGTGCTGCTAGGATATCTAGTAATGATAGGTCTTTTTCAAGTCATTAAGAAGCAAAATAAAAACTAGAGCAGCTGAAGGATAATGTCGTTTGGACCATTAGCAGCATTAATAGCTATTCTTTTTGTATTTGGTATTACGGGTGTGTGATAATTATGTATAAAAGAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTCTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //