Array 1 68810-69821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYY010000010.1 Listeria booriae strain FSL L7-0153 NODE_10_length_118222_cov_40.364205, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 68810 30 100.0 35 .............................. TATTATTAGATGAGCAGTTGAAGGTTTTCTCAAAT 68875 30 100.0 36 .............................. ATGCTCAAGTATTTCTTTTCTAGCAAACTAGAAGCC 68941 30 100.0 34 .............................. GCATCAAAAACGATGTATTTATTTTCCGCCTCCG 69005 30 100.0 35 .............................. CTTAGTGCATTCGTTACAAAAACCCGTTCTTTACC 69070 30 100.0 35 .............................. CCGGACATGGACGAAAAATACCACGCCGCGCTAAG 69135 30 100.0 36 .............................. AGCGTATTCGTTGAGGTAACAATAGAGGTTGTAATA 69201 30 100.0 36 .............................. CCACCTGAGCCAGCGTGTGAAACAATACCAGAATAC 69267 30 100.0 34 .............................. TTAGGAATCCGCCGACATATCCGCCGACATCCTT 69331 30 93.3 37 AG............................ CCGTCTTTGTCCATTTGCTTCATGGCTCCGACACTGC 69398 30 100.0 35 .............................. AATTCTGAACCCTTAGCGAAAGTCTCTGATTTTTT 69463 30 100.0 36 .............................. TCGGCAGCCGTTGATTTAAGTGCGGAAGACGCTGGC 69529 30 100.0 34 .............................. TGGGTGCACTTGCGGCAAGTATGTTACCTGTTGT 69593 30 100.0 35 .............................. CAACTGCGAGCGTACAAAAGTAGTTATCAGTTACA 69658 30 100.0 37 .............................. AAGGCAATAATATTCTGCAAACCATCCGGCAGATTGC 69725 30 100.0 37 .............................. TTTGAAATAAGACGCAGTATTTCTGATTTAACGCATT 69792 30 80.0 0 .................A..A...A.G.TC | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 98.3 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAACGCAATATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGTTTAGGGGGAGAAGGGATTAGGATGGCTTTCGAGAAGTAGAAAAAAATAAACAGGTGCAAAAAAGACAAGTTTCTTGGAGGTCGACAGATTTGGGCTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCGAATAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTTGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAGACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 73068-73889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYY010000010.1 Listeria booriae strain FSL L7-0153 NODE_10_length_118222_cov_40.364205, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 73068 30 100.0 36 .............................. TTTCTTGATCTAGCGAGACATATCCATCGGCTTCTT 73134 30 100.0 34 .............................. CACATATATGTGTAATGAAAACACCATAATTTCA 73198 30 100.0 37 .............................. ATGTTTGCTAACTTACCAAACAGCATTGCGTTCTTAA 73265 30 100.0 36 .............................. TCGGCAATCGGCTGTAGATGCTCACAAATGAGATCA 73331 30 100.0 36 .............................. TCACTATCAGCTTGCATCGTATTGTTGATTATAACT 73397 30 100.0 37 .............................. AGTGTTGGAAAGTAAGGGCTGGACGCTGGTATCTTAC 73464 30 100.0 35 .............................. TCCTTTATATCAAAAACAAAAAATGTGTACGCGGA 73529 30 100.0 37 .............................. AAATCAGAAATGAAGGCGGAAGTTTCGTTTGATTTGG 73596 30 100.0 36 .............................. ATGGGGAAGTTTTTTTGATATAGAGCTTACTAACGC 73662 30 100.0 36 .............................. GACTAAAAGAGGCGCAAATAGAGAATCTAAACGCAC 73728 30 100.0 36 .............................. TTACGAGTCATTGCATACTGGAAAATCAAATCTTCA 73794 30 100.0 36 .............................. AAGTACGGCTCTAAATATACCTCATGTTTCGGCATA 73860 30 96.7 0 .....................G........ | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATTCGAAAAGCTGGGAACCATTCCAAAAAGAAGCATTGCAACATGAAATGAGCAGCTTTGAAGTGCTAGATAAAGAACGCCTCGTTCAGAAAACAACATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACCATTCCTGCGAATAGCGCATTGATTGTGCAAGGCGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGGAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGGTGCTAAAGGAGTTAAGTCTATTTTTGGATTTTAGGTTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : TGTCAGCGAGGCATATTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAATATCCATTTTTCAGTATTAATGGATATTAACCCTCTTAATCTATTGGCCTATCTGATGAAAATTTTTAGTATGCAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTTGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACGGGGATTTTAACGCCCTCTACACCATTCACAGTGAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACAATTTGATTTGCGAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 580114-579358 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYY010000001.1 Listeria booriae strain FSL L7-0153 NODE_1_length_609726_cov_41.266694, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 580113 30 100.0 37 .............................. CTCCGCTTAAAACCACTCTCAATCAATAACTCATAGG 580046 30 100.0 35 .............................. TCAGAAACAGCTCGAAGAAATGGGAGTCATTGCCA 579981 30 100.0 35 .............................. AGGTCTGAAAGATGTTGTCAATGCGGTTTATGCCA 579916 30 100.0 36 .............................. ACATGGAGCGCGAATATTTCCCGCGTCACGAGCGTA 579850 30 100.0 37 .............................. GTGTGCAGAACTTGGAATGAGTACTGACAGGTTCTAT 579783 30 100.0 36 .............................. ATAAAAGAGTCATTAAATTCTACAAAGGTCTTCATT 579717 30 100.0 37 .............................. ATCCATTCCAAGATCGCCAATCTTCGCTTTCGTGTTG 579650 30 100.0 36 .............................. TACATCATAAAGGCGACAACTAAGAATAACAACACT 579584 30 100.0 36 .............................. TTTTTAACTAGGTTGTCCCAGTCGCCAGTATTTACA 579518 30 100.0 35 .............................. TCAATCATTTACAACACCCTCACTATCTTTTTCTT 579453 30 93.3 36 A................A............ TGGCATCAATTTCCGCTTGAATCACGTCGTACAATT 579387 30 96.7 0 .............C................ | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 99.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGCGGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGACTAGATTTGAGACCGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGGTTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTCAATCGGGTACCT # Right flank : ATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATTGTCTTTATCTAAATAATATGAATCCAGACTAGATTGCCCACAGAAGCAGTGTTTCTATCCATTTTTTACAGAATAAATTATCATTCAACAATCCTAACTAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTACGGAATTTGATGGCGGCGGGGGTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGCGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGAC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 14092-13661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYY010000004.1 Listeria booriae strain FSL L7-0153 NODE_4_length_383678_cov_44.511972, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14091 36 100.0 29 .................................... ACTCATCTAGAGTATGTAGGGCTTGTTAT 14026 36 100.0 29 .................................... ACTAAAAAAATTAAAGAGGTGCTTCATAC 13961 36 100.0 30 .................................... CACACATAGAAGCAGGAAAACACAAATTTA 13895 36 97.2 30 ...........................T........ AAGGAAAGGGTGAGGCGTGATGTACGCAAT 13829 36 94.4 30 ................A..........T........ CGAGGAACACAGGAGGAATTTATGAAACAT 13763 36 100.0 30 .................................... ACAGAAAATGCGCTGTAACGGGCAGACAAG 13697 36 86.1 0 ..........................TG.A..C..A | A [13666] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.8 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : GTAATACCGCTGACATTAATTCTGTTATTTCTTTATTGATTGCTTTGTTGATTGCTATTTTACGTTTATCTTTTTCTTTTTTGTTGGGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACAATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATCCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : TCTATTTTACTTTCAACAGTTTAACTATACCAGATTATTAGTAACTCTGCATCTTCGCGTAATCACGCGTACTAAATAATAATTTCCCGTACTAAATCAACAAAAAACACCATAAACCGCATCTTACACAGCGATCTACAGTGTTTCCCGTTCTTTCTAAGCGGAGAAACGGGGATTCGAACCCCGGCGCGGCCGGAACCGCCTAACAGATTTCGAGTCTGTCCCCTTCAGCCGGACTTGGGTATTTCCCCAAAATGCAATGTTGTTGTGGCAGGCCTAAATGGCTTGGCTTGAACAATTACAAGTTCCATTCTAATGCATTTTTTTCGAAAAATCCAGTTTTTTATTTAATACGCGTCATAAAAATCGCTACGCATGTGGGGAATTACTTTTTCCCAAGCTTCGATGGTTATTTCACTGGCTTGGGCTTTTTCGTAGTAGACAAGGTCTCGTGGTCGCACAAAGCCCATCATCATTTGTCCTAAGCCTTGAATCGTAAT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 18096-17532 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYY010000004.1 Listeria booriae strain FSL L7-0153 NODE_4_length_383678_cov_44.511972, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18095 36 100.0 30 .................................... ATCCACTTATCGAATTATATTTAGATGCGC 18029 36 100.0 30 .................................... TTGAAGATTATTTTGAAGGCACAATAATTC 17963 36 100.0 30 .................................... TGGGCGCATACGATCGTTACGAACTCAAAT 17897 36 100.0 30 .................................... ATATTTATTCCTCGTTGCAGGGCATTGAGC 17831 36 100.0 30 .................................... CGCTTGAGGAACGCGTTGGACATGACTTTG 17765 36 100.0 30 .................................... CTAATGAGTATGCAGATGAAAAAGACTTAG 17699 36 94.4 30 ..............T.G................... AAACGAAAAAGGCATACATTAGAAAGTCTG 17633 36 97.2 30 ................G................... GTGAATTAGATCAAGCAATCGCCAAAGCCT 17567 36 86.1 0 ................G..........T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.5 30 GTTTTAGTCCTCTTCTATTTTGAGGTACTCTAAATC # Left flank : ATCAGAATACTGTACAGATATCCCCATATCGAATATTTTCGAAAAATCATCAACACTTGGCAATTTCTTTGTACTGATGATTTCTTCGTCTTGAAGTGTGATAGGTAACGCCTTGCTACCGTCTTTCTTCAATAAACGAATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAGTCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTATTGCACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTAGCAAATAAATACTGCATCATTGACTACTAATCGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCACAGTAGAG # Right flank : TTTGTTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTATCATTTAATTTTTTCCCCCTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATTACCAATCTGTGTTTATTGTTTTTCAAGTTTGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTTTTCTCAGAAACAAATAGCCCTGCCTTGTTCATGAAAATATCCAGTTTTTCAATATAATCTGGCCTGTTTTTTCTGGTAGTATTAATCCAGCTATCCACTCTTTCGGTATGTCCAGAACTCTTTAAATATTGA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTATTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 122754-124153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYY010000004.1 Listeria booriae strain FSL L7-0153 NODE_4_length_383678_cov_44.511972, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 122754 30 100.0 36 .............................. ACCGTACCAAAAAAGGATTCGTTCGAAAAACGATTC 122820 30 100.0 34 .............................. AGTGTTATTAATTAGTATTCTTGCAAGTGTCATA 122884 30 100.0 34 .............................. AAAGAATTAGAAAGCGAAATCGCAGAGGCTTACG 122948 30 100.0 35 .............................. ACCCATATATCCTTTTTGTGCTTTTCGTAGTAAGC 123013 30 100.0 34 .............................. ATTTTGCGTTGACTGCGGAAGAACGAGACATGTA 123077 30 100.0 36 .............................. CTTGTAATGGTTCCTAATGGATTGTGTAGGCTTATT 123143 30 100.0 35 .............................. CCAATAATTAAAACGCCCATCACGCATCACCTTCG 123208 30 100.0 37 .............................. AAGTATAAAGGTCACTGGTTGAACAATTGGGTCGAGA 123275 30 100.0 36 .............................. AAAGTAGCTCAAACAGGTAGTTTGTTTAGCAAAGCA 123341 30 100.0 36 .............................. TCCGCTATCTCTGATTTTAAACGAGCGGCATTTGCC 123407 30 100.0 36 .............................. GGTCGATGAGGAGCGTAGACAGCAAGTTATTAAAGC 123473 30 100.0 36 .............................. AAAATCGCTAAAACTCCACTGTGGCGCAAACTCACA 123539 30 100.0 35 .............................. ACCTTTTGAAATCATGAATTAGTTTTTCTCTTTCA 123604 30 100.0 37 .............................. AGAACATTGAAGTAGCATCTAAAAGCTACGAATTAAA 123671 30 100.0 36 .............................. AGCTATGAGCAGAACTTTATCACATTGCTTGAGTTA 123737 30 100.0 35 .............................. ACCGATAGTAGCAAAAAAATCACAGAATATGCGCT 123802 30 100.0 36 .............................. GTGGATGATGAACGCTACACTGATGAAAATAGCATG 123868 30 100.0 37 .............................. CTGCTGGACCAAACATTTTTCCGGCTTCCGTAGCCAT 123935 30 100.0 36 .............................. TATCTATTTTCAGGATGAACATGCAGATCGTAGAAA 124001 30 96.7 36 .................A............ ATTGGCAGTGTGTCGAGTAATACAAGTGTGCCGTCT 124067 30 90.0 27 .............C...A......A..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [124124] 124124 30 73.3 0 ......CC.G.....C.A.....CA...C. | ========== ====== ====== ====== ============================== ===================================== ================== 22 30 98.2 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCATGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGGTGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTAGATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGCATTGGTACTAATGAGATTAAGCCTATTTTCGGAGTTTGGGTTGTAAGGTTTGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : TTAGTTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCGATGTTCGCAGCAGTATACTCTACTTTCCAGTCCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGTGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //