Array 1 38-371 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CACSKD010000381.1 Rhizobium sp. 18055 isolate 18055_Rhizobium1_Ancestor, whole genome shotgun sequence		Array_Orientation: Unconfirmed

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
        38	    29	 100.0	    32	.............................	GAGCTGGTGCGCCGACTCCACATCGAAGACCA	
        99	    29	 100.0	    32	.............................	TGGCGCTGGCAGAGGCCCAGCGGCTCGCGACC	
       160	    29	 100.0	    32	.............................	CAGCTCGCCACCGTGGACATCAAGCTGCCGTC	
       221	    29	 100.0	    32	.............................	CGGCGGCATCACGCTTCCAACCGGCACGCGGG	
       282	    29	 100.0	    32	.............................	CGCGGGGGAGGTAGAGGCAGCAGCCGATGGAG	
       343	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
         6	    29	 100.0	    32	GGTTCCCCCGCATGCGCGGGGATAGGCCC	                                	       

# Left flank :   GGCCCATATGGATACGCGCGTGTTTCGACCTTAGAGCG
# Right flank :  CAGACGAGCCCAGGAAGCCGCCGAGGCTGCTTGGTTCCCCCG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GGTTCCCCCGCATGCGCGGGGATAGGCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [26.7-20.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         NA [0.37,0.37   Confidence: NA] 

# Array family : NA
//


Array 1 340-6 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CACSKD010000509.1 Rhizobium sp. 18055 isolate 18055_Rhizobium1_Ancestor, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
       339	    29	 100.0	    32	.............................	GACCGGCGCGCGAGCGCTGACCACCTCGGGAA	
       278	    29	  96.6	    32	.............A...............	CATTGGAGGACGGGTCAACAGTTAGCGTCCTG	
       217	    29	 100.0	    32	.............................	CGGCTGATCGTGTGCAACAGCGTGGCGCAGTC	
       156	    29	 100.0	    32	.............................	TGGACTGCAGGGTGTATGCCTACGCGGCGCTG	
        95	    29	 100.0	    32	.............................	TGGACTGCAGGGTGTCTGCCGACGCGGCGCTG	
        34	    29	  96.6	     0	.......................G.....	|                               	
==========	======	======	======	=============================	================================	==================
         6	    29	  98.9	    32	GGTTCCCCCGCATGCGCGGGGATAGGCCC	                                	       

# Left flank :   GGGATAGGCCGTCGGAGCATGGAAAGTGCGCGCGATCCGACA
# Right flank :  CCGGCT

# Questionable array : NO	 Score: 6.01
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GGTTCCCCCGCATGCGCGGGGATAGGCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [4,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [1.7-25.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,1.05   Confidence: MEDIUM] 

# Array family : NA
//