Array 1 20719-21811 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGU01000007.1 Streptococcus oralis subsp. tigurinus strain UC5873 TZ95_contig000007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 20719 36 100.0 30 .................................... CAACGCAACCTCATCACAGAAGATCCCAGC 20785 36 100.0 30 .................................... CACTGCCTGCGCACGTTCCACCTGGCTTGT 20851 36 100.0 30 .................................... ACGACTTTGGGAAGACGAGCTTACGGAATT 20917 36 100.0 30 .................................... AAATTATTCCAAATGTTCTAAAATTGTGCT 20983 36 100.0 30 .................................... AGAACGAAATCAAAGACGTTACTCAAGAAC 21049 36 100.0 30 .................................... TAGGCACTTGGTTTGGTGAGCGCTGGGCCG 21115 36 100.0 30 .................................... AATAGTAAGGATTTTAGTTCCCCAGTGATA 21181 36 100.0 30 .................................... GCTTACTATACAGAATGTTATCATATTCCA 21247 36 100.0 30 .................................... TATTTTTTTGTAACGGTATCAGGGACGAGC 21313 36 100.0 30 .................................... GAAATTAGTGAGATCTTTTCAAGTCAGAAT 21379 36 100.0 30 .................................... TTTGCGAACATTTTTTGATGGACTTTAAAA 21445 36 100.0 30 .................................... GCGATACAGGTTTTTTAGTTTTAGGTCCAT 21511 36 100.0 30 .................................... CGAACAATCGGAGCAAGTGATGATGACATG 21577 36 100.0 31 .................................... CGTTGTAGATTCGCTGATGAAGTAATCAGCA 21644 36 100.0 30 .................................... CTATCCATCAAAGAAATATCCATATCGTCA 21710 36 100.0 30 .................................... TAGGGTTGAGTCCAAAAATTGTTCGAACAA 21776 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 99.8 30 GTTTTAGAGCTGTGTTGTTTCTAATGGTTCCAAAAC # Left flank : ATCAGCTCAATGACAAACCCGAAGTCAAGTCCATGATTGAAAAGTTGGTTGCTACGATTACAGAATTGCTGGCATTTGAGTGTTTGGAAAACGAGTTAGACCTAGAGTATGATGAAATCACCATTCTAGAGTTAATCGATGCACTTGGTGTCAAAGTCGAAACTCTGAGTGATACACCTTTTGAAAAGATGCTAGAGATTGTCCAGGTTTTTAAATATCTTTCTAAAAAGAAACTCCTTGTTTTCATCAATGCATCAGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTAAATCAACTAAGGGTTTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCGCAGTATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGAACCTAACGAGCTGAAGTCAGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATCTTTCTACGAG # Right flank : AAGCTACTCATTTTTTGAGTAGCTTTTTAACTATTCCAACTCTACACATAGCTCATTCCTTTATAGAAAAGGAAAACGGCTAGTGCGATAAAAAATAGGGCTGCTCCGATTCGCTGGCTGGTACTATACATCCTTTTTTCCCATTTGACTGGAAAGATGATTGCTAGAAAGGCCCCACCTACTGCGCCGCCAATATGCCCTGCTAGGCTGATTCCTGGAATCAGAATACTTCCAATGATATTTATCACGAAAAGTGTCAGATAGGATTGCCCCAACTGCTGGATATAGGGGCTGCGAGTTGCGTAGCGCAAAACGATAATCGCAGCAAATAGTCCGTAAAGAGAAGTGGAGGCCCCTGCTGCTAGGACTTTCGGTGTGAAAGCAAACACAAAGAGATTGCCCATCATTCCTGATAAGAGATAGAGAAAGAAGAACTGCTTAGAGCCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGAGAAAGCATATTGACAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCTAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 319433-320193 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGU01000006.1 Streptococcus oralis subsp. tigurinus strain UC5873 TZ95_contig000006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 319433 36 100.0 29 .................................... CGTTCCAAGAACCGCATTGACTGCGCTCT 319498 36 100.0 30 .................................... GTGGAGAAATCATAGCCAGTAAGAAAGTTA 319564 36 100.0 30 .................................... AAACTCCACTAAAGAAGTCTCCGATAGAGC 319630 36 100.0 30 .................................... AATTCCATTTGCAGCTATCGACCGCACGCT 319696 36 100.0 30 .................................... GTATGCAATTTACACAAGAAATTGAAATCT 319762 36 100.0 30 .................................... TGTGCAAAACGAGTTGCCCTACTTGAAAAA 319828 36 100.0 30 .................................... TCGTTGGCATGCCACCATTCTGGCCAATCG 319894 36 100.0 30 .................................... AAATTTGCAAACGCTGAAACATCTGAAGAA 319960 36 100.0 30 .................................... AATCCGTCAATGATATTGACAATTCCGGTT 320026 36 100.0 30 .................................... TTTGAACAAATCAAAGCTGACTATGAATTT 320092 36 97.2 30 ................................A... TTGTTTCTCGTGCGGTCGCATTGCAGGTAG 320158 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GATGATTTTCTATCCTATAGTGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTTACTAATCATAATGATTCATTATATATTGTTTTGTTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTCTATCTGTAGAAGATCAAGTGGCATTAAAAATTTTGAATAATTTGTATCAGTATGAAATGAAAACAAAATTTCGTAGTGAATCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTAGAATTTAAGAATTTATAATATTTTTGAGGGGAGCAAAAATCAAAATTGACGAATTTGAG # Right flank : CACCTCATGCTTGAAGATGGCCGATTGGCTGAAAAAGAAAGTTTCAACATCGAGCCTAACGGATTGATCCCTACAAAATAATTTTTTAAAAATAGAAAGGAAATTTTCTAAAATATTGTTCGAATTGTAACCGCAGGCTCAGGCTTGCGGGCTTTTTTGTTTGCAATAATAAAAGCAGTGACGGAAATCACTGCTTATCAGCTGTAGCAAATTCATAAAGTTTTTCTGCTGTGAGAAGTGCCATTTTGTCCATGCTTGTTTTTCCTTTTCTGAGGTCAGAAACGGTAGTCCATGGCACACCGGCACCTTGTGAAATAGCAGATGTAGAAATAGAACTATTAAGTAATTCTTGAATAACTTTTCTCATATTTTTCTTTACCTCAATTTTTATCTTAATCATATTATATAACGGAGAACCGAGATGTCAAGCGTTTTGATAAATTATTTCTAAATATTTTCGCCCCAAACTTGCCCCCAAAAACTTATTTTTTTATATTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //