Array 1 36435-37196 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWMN01000001.1 Enterococcus thailandicus strain F0711D 46 Ent-16_S35_L001_001_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 36435 36 100.0 30 .................................... ACATTAGACTAATAAACAATGCTATGGTCA 36501 36 100.0 30 .................................... CTTTATCTTATATATTTAGTATACTTTAAA 36567 36 100.0 30 .................................... TATTGTTTTTGCCTGACAACGTACCCAATA 36633 36 100.0 30 .................................... AGTGATAGACAAAGAAGAATACACGAACAA 36699 36 100.0 30 .................................... GCACAAAAGGCGAAGAACGTCAAGACCCAA 36765 36 100.0 30 .................................... CCTGTGAACCGTCCAGAAAATGTGCCGTCT 36831 36 100.0 30 .................................... AGTCTACATGATAGGTAATACTTTAAATTC 36897 36 97.2 30 ......A............................. TAAAGATGTAACAGCTAATTTAGTTGCGTA 36963 36 100.0 30 .................................... AATAGGGGTTCGACTCCTCTACGACCTGTT 37029 36 100.0 30 .................................... ACTTGTGATAGTGATGTTAGGATCGTGTAT 37095 36 100.0 30 .................................... CGGTCATACTTTAGCATTACAAGGCAAATT 37161 36 88.9 0 ........A............A.....C.....C.. | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.8 30 GTTTTAGAGCTATGTTGTTTAGAATGCTTCCAAAAC # Left flank : TGCAAATCCTTACTTGGCAATGGCCGTATTATTGCAAGCTGGTTTAGATGGTATCCGTCGTGAATTAACACCGCCAGATGCGGTTGACCGTAATATTTATGTGATGAATGAAGAAGAACGTGAAGCAGCGCAAATTCAAGATTTACCTTCAACGATTCACAACGCAATTAAAGAATTGCGTAAAGATGAAGTGATGATCGATGCACTAGGTCAACACATCTTCTCAAACTTTGTTGAAGCGAAACGTTTGGAATGGGCAGCTTTCCGTCAAACAGTTTCTGAGTGGGAAAGAGAACAATATTTAGAACTTTATTAAGTCAAAAAAGTAGTAAACACAGAGGCAATCTTTTGTCTCTGTGTTTTTTTCATCCATTATGTTTTGTTTCCCACAGGTTTATTTTCCCATGATATAATAAGAAAAAACAATTGTTGAAGTACTCTAACTGAAGTTTTGCTATGGACGAGTAGTGCGATTACGAAACCTTGAATTTTTTTGCGAG # Right flank : CCAACAAATTTTTTTGAAATCGCAATCATCAAATTGATGTCTTGACTTTCAATTCTGGAGCTTGTATTATACTCCTTGGGCACCCTTTTAAAGGGTCAGAAGTTTACAGAAATTTCAGCTCCCTATTCTTGTTAGAAGAATAGGGAGCTTTCTTTATTTTTTCTGGGACTTTTCCTGCAGATAAAACAAGAAGGAGTTTTTGAATTTATGACAAAATACATTTTTGTAACTGGCGGCGTTGTATCTTCGATTGGTAAAGGGATCGTAGCAGCTTCATTGGGTCGCTTGTTGAAAAATCGTGGCCTAAAGGTAACTATCCAAAAATTTGATCCGTATATCAATGTTGACCCAGGAACAATGAGTCCTTATCAACATGGAGAAGTATTTGTAACAGATGATGGTGCGGAAACAGACTTAGACTTAGGACACTATGAACGTTTTATCGACATCAATTTGAACAAATACTCCAATGTTACCACAGGAAAAATCTATTCTGAAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTAGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 8468-7838 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWMN01000012.1 Enterococcus thailandicus strain F0711D 46 Ent-16_S35_L001_001_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8467 36 100.0 30 .................................... TGTGTTTAGTGTGTATGATTCAATAAAAGT 8401 36 100.0 30 .................................... CGTGGATAATTTAAAATGTAAAATATCCTC 8335 36 100.0 30 .................................... TTCGGTAATTGTCGAACTTGGCGGTGGTGT 8269 36 100.0 30 .................................... TCATCTACGAGATAATCAAGTATTTCAACT 8203 36 100.0 30 .................................... AAAAGGATTGAATCATTTGAAAAGCTTAGT 8137 36 97.2 30 ....................T............... CAAAAACAAAATTGAAAAATATTTTGAGTA 8071 36 97.2 30 ....................T............... GTAAAGCCATGAAGGCATTGTCATGGTACT 8005 36 97.2 30 ....................T............... TCAATTTTCACTGACTTAATTGTTATGCAC 7939 36 97.2 30 ....................T............... ATTTTGAAATTCCAAAGGATTATAAAAATT 7873 36 94.4 0 ....................T...C........... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.3 30 GTTTTAGAGCTATGTTGTTTCGAATGCTTCCAAAAC # Left flank : CAGAAATCAAAACCAAAATTGATCGTTTGTCGATGGAAATTGCCAAAGTGATGCAACACGAATTGTTAGAACATGTGCTAGATCTTGAAGAAGATGAGTTGACCCTCATGGAGATATTTAAGTGCTTAGGAATACGGATTGAAACGAAAAGTGATACCATTTTAGAAAAAATGATTGAAGTAATCCAAGTATATCGTTATCTAGTGAAAAAGAAGCTATTGGTATTCGTGAATGCTTGTTCTTATTTAACCACGACAGAATTACAAACATTAATTGACCATATTTCTTTATACAATGTAGATGTATTATTTTTAGAACCTCGACCAGTTGAGGGAGTTGCACAACAAATTCTAGACCAAGATTATTTTTTGACAAGAAGATAACAGATAGGACTAATTTTTTCGTTCTTTGACAAGTAAATCAAACCAATGAAGCATTCAGGCTGAAGCCTTGCTATGGGCGAATAGTGCGATTACGGAACCTCAAAAATTTGAGCCGAG # Right flank : TGTTTTTGTCATTTTGTTCCAGTCGAAACTGTTTTAGAGCTATGCTGTTTGACGGACAAACTCATCTGTTTCTGAAAGCAAGCAGTATACATTCATACGATCAAATAAAAAAAGATGTAACAAATGGAAAAATAACAATGATTGAAGATGCAAAAAATTTTGAAGGAAATCCAGTGGTGAGGGTTATAGCACAAACAAGTAAAGAAGATGTCGGAAAGAGTGACACGCTAGGACGAAGCGATTTCCAGTTCCTAGGTGCTAATACTGAATGATTTACACCGCTACTTAGCAAATAGATAGGCAAAAAAAGTGTAAAGGAAGTATTTATGAAAAAGGTTGTTGTTACACTCATAATAATAACTACCCTTGTCGTAGGATTTCTTTTCGTAGGCGCTAAACGTACAGAAAATCTACTACAAAATAAGGTTGAAAGTACCACTACAAGTGATGAAGAGGCAAATGACAGTTCAATCCAGTTCAAAATTATTGATTCAAATAAA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTCGAATGCTTCCAAAAC # Alternate repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 51972-52272 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWMN01000014.1 Enterococcus thailandicus strain F0711D 46 Ent-16_S35_L001_001_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 51972 36 100.0 30 .................................... TATCCACACGACCAAAGTAATACCCTAAAT 52038 36 100.0 30 .................................... ATTTTTATAAACACTATCATTGTATACATA 52104 36 100.0 30 .................................... TCGTCTGGTTTATACATATATGGATAAGTT 52170 36 100.0 30 .................................... AACAAGACACTTTAAACGGCTATGTAAATA 52236 36 91.7 0 ............................A.....TT | G [52264] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.3 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : CGTGATCCACGTGTTGAAAACGTAACGATCACGGATGTACATGTAACAGGTGATTTGCAACAAGCAACCATCTATTACAGCATCTTATCTGATCTTGCTTCAGATAAGAAAAAAGCTCAAGAAGGTTTGAGTAAAGCAAGTGGGCTCATTCGTCGTGAATTAGGTCATAACCTAAGCATTTACAAGACACCTGAGCTAATCTTTGAATTAGATGAGTCTGTCGGCTATGGTAACCATATCGACGAGCTGTTGCGTAATTTGAATAAGGACTAAACAAAAAGAGTAACAAACCTGGTATATCAGGTTTTGTTACTCTTTTTTTATTTAGATTAAAAAACAAAAATTTATTCGCAAAATTATTGGGCAAGTAGTTCCTATGTTATAATGAACAAAAAAGACGCTCTTTGAAATAAAAATATTCAAGCTAGATGAGCATTCAAACTGAAGTTTTGCTATGAACGAATAGTGCGATTACGGAACCTCAAAAATTTTTAGCCGAG # Right flank : TGATAGAGAAATTAACCAAAACATTACCCATTTATTGGGTAATGTTTTTTTGTTATAATGAGGTGAATATGGTAAGAGATTTTCTAGAAATTTTTGTATCTTTTGGATTGATAAAAAAATAAAAGGATGTGGCGATAATGAAAAAGATAATTGGGTTAAGTGTGATTGGCATGACTTTGTTTCTTGCTTCTTGCGGGAAAAATGAGCAAGTAACTTCAAGTAAAACGTCACAATCGACGGTTCAAACGAGTGAAACAACAACAACGACTGTCTCAGAAACGGCAACAAGTGATTCAAACACGGAAACAGTTGTTAAAGAAACGAATTCAACGGTAACGACAACACCAGCGAGTTCAACAGGTCAAAGTACAAATACATCAGCAACAAACTCAACGAGTGAAATGCCTTCCTTTACACCAGAACAAAAACAAGCACTAGATGCTATTTACGAAAAATATCCAAAGTATAAGGATTCAGATATTGCTTTTATCTTTTGGCAA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 99440-99739 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWMN01000010.1 Enterococcus thailandicus strain F0711D 46 Ent-16_S35_L001_001_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 99440 36 100.0 30 .................................... TGTGAAAGTTCGTGTGCTAATTCTGATCGG 99506 36 100.0 30 .................................... TTGTTTCATGCTATTCACCGCCTTTATAGT 99572 36 100.0 30 .................................... TAGCAAGATTGCTCAACCTAAGTCCTGATC 99638 36 100.0 30 .................................... GTAGTAGTCAAAAGCTCTTTCCCAATTTTC 99704 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : TATATTTTTTCTTGTTGTGCGTATGACTAAAGCCAATAACACTGACAAAAAAGAAAATTGTTGCGACAGGTCTACCAAACCAGTCTAGCCAGTTAGGTGCTCCAAATGGAACAAACATCTGATGGATATGATCAATAAACATTAAGACAATGCCTAACATCTTTAAATCAAATGTTGATAGGCCTTTTTTGGGTGTATCAATCGTCAAAAATAATTCCTCCTAACTAACAATAACTATATGTTAACAATATGATTGATTGAAAGGCTAGTGAAGTAATATAGAACGAGCGAACAATTTTGTCACAAGAGATTTTTTTGTTATCGATCATATACTGGTCTTTATGAGGAAAGAGTTGGGTAGTTGGGCTAGTGAATTCATGGTATACTAATAAAAAAGATCCTTGAAATCTAAATAAATAGATACCAATAGAAGCATCCAAACTGAAGCCTTGCTATGGGCAAATAGTGCGAGTACGGAACCTCAAAAATTTTGAGCCGAG # Right flank : CAATAGAAAAGAAGGTTTTTCAATGCTCTACCTGTGTATATTTAGGGTATACTCAAAATATACGATAATGTTCTATTTATTGATAATTATCTTCCTTAATTTTGAAATGGCAGAAATCGATATCAATGAGAGGATAGATTTTTTCTTAATCCTAAAAAAATTGAACAACAATTTCCGGAGTTTTTTAAAATCTCTGAGTTGTACTATTTGAAGGGAAAAATATGTTGGATACTAGAGAGTATGAGCTAAAGCTGCAGCAGCCGTAGATTTTCCTTGTAAAAAGGTTATTAAAGGTTTAAAAAGAACGCTTGAAAGAAATTGGAATACCAGTTCCAGAAATATATCAAGATAAAATAAAAAAGATGTAGCCGAACAAATGCTTTGAAGAGGGTATAAATCCTGAAGATTATTAGGCTATAAGATTATATAGTTAAATATTAAATGTTATTTTTTGTGAGTGTACATACTTGATAAACCTTGTTTTTTAGCGTGTTTAGGTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 111590-111889 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWMN01000010.1 Enterococcus thailandicus strain F0711D 46 Ent-16_S35_L001_001_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 111590 36 100.0 30 .................................... AATTCTGCTAGGCGTGCCACCATGTCTGTT 111656 36 100.0 30 .................................... TGGGACTTGATTTTACCCACTTGTTAGCTA 111722 36 100.0 30 .................................... ATTAGCTAACTTAATTAGTCGTTGTACATT 111788 36 100.0 30 .................................... AGTCGTATTAAAGAAAAGCGACTATAGGCT 111854 36 83.3 0 .............................A.TTTTG | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.7 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : TCTGTTCAACTATTTTTCGATCCAACGACCCATCAAATTTTGGGTGGAGCTGTGTTATCAACTTATGATATTACTGCTCAAGGAAATGTGTTAGCTTTAGCAATCCAACAAAAATTAACACTAGAAGATTTAGCTGAGGCAGACTTTTTCTTCCAACCAGGATTTGACCGTCAATGGAGTCTGTTGAACCTAGCTGCACAACATGCTTTAGCTGAAAAAGAATTTATTGAATAAAGCGAAAATTGAATCAACCTCCAAAAGTAGTCAAATGGACAGGCTTTTGGAGGTTGATTTTTTCATTTACAATCAAATGATAGCCAGTATAGTGAAAAGCTTATTGTTTTCCAACTATTTTCGTTGCAAATAAGGTTTCATGCTATACTAAAGAAAAGTGTTCCTTGAAATAAGAATAACCAATGACGTTAACGAAGAAGCATTCAAACTGGAGTCTTGCTATGGGCGAATAGTGCGATTACGGAACCTCAAAAATTTGAACCGAG # Right flank : GACTGAAACTGTCATTGTTTTAGTATGTGTTTATAAAAAGTAGCAGAAAGAATACGTGATATTGACTCAAGAATAACTGATGATAATTTGCAGTAAAAAAGAACGCAGTTTCATGTAGTTCCTTAAAAGTAGGGAGCTATTCATGAAACTGCGTTTTTTTGATACCTAATTTAATTAACGAATAGTACCTAGAAACATTTCAAAATTTTGCGTATCAGCTATTTTTTGTTGTAGTTTTCGGTCTTCTACAAGATCAGATAAATACTCAAAAAAAGCTTGGAGTTTGTCTTTGTCATCTTCAGCAACGGCAAGTAAAAAGATGATTTTTACGGTTGCATTCGGACGCCAAAAAATCGGTTCTTTTGAGATGTAAACAAAAATTTTTGTTTTCTGGATGGAGGCATCAATAGCATGAGGGATTGCGATCAACTCAGTGATATTTGTTGGTGCAATTTCTTCTCGATCAATCACTTTTTCAATAAAATCTTCAGCGACAATGT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 125056-124689 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWMN01000010.1 Enterococcus thailandicus strain F0711D 46 Ent-16_S35_L001_001_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 125055 36 100.0 30 .................................... TAGAGACATCATAGTAATCAATTCCGTGCA 124989 36 100.0 30 .................................... ATCAAAATGAATTTCATTCAAAAGCTCTAA 124923 36 100.0 30 .................................... AGTGACCTTCACTTGACCACTCTCTTTATC 124857 36 100.0 30 .................................... AAATATGATTCACTACGCACAACAATTTGT 124791 36 100.0 30 .................................... ATAGCCACGACCACGAAGCATTTTCTTTAA 124725 36 88.9 0 ............................GG.T...T | A [124697] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.1 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : AAGAACGATTTATGGATGAAGATGGACAAGTAATTGATGAGTATCGGATTGAATTTATTCGAGACCACTTAGCTTATCTTTGGAAAGCAATTGATGACGGCTGTAACATCAAAGGTTATCATTTATGGACATTTATTGATTGTTGGTCATGGATCAATTCGTACAAAAATCGTTACGGACTAGTTTCCTTAGATCTACCTACTCAAAAAAGAACAATCAAAAAAAGTGGCGAATTTTATAAAAAACTAAGTGATGAAAATGGATTTAATTACGATATTGATTTGTTAGTTCTTTAAACAATTATGTCCCTGTAGCTCAGACTCATCCATCAACCAAAAACTGGTTATGACAGAAAGTCAGTTTATGCTATACTAAAGAAAACTGTTCGTTGACATTCAAATAGCCAACATATTACCAAATAAATAGAAAGAAGCATTCAAACTGAAGCCTTGCTATGGGTGAATAGTGCGATTACGAAATCTCAAAAATTTTTATCCGAG # Right flank : GTATGATAAAAAAGGACCGCCCATTGAGAGCTGGTCCTTTTTTTGTTAAATTTTTTGATCAATTTCAGTGACAGTTATTTTTAGCACACGGCTTAAGAACGGAAACTTTTCCTTCATTTCATTAAAAATTGGTCCCTCTGTGATAAACTCAGCGGTTCCGTGCAAATGGAATCCTGCACCAGGTCCTATTGTACCAATGACTTCTTTGCTTCCAACGGTTAACATCACTTGATTATTTTTTTCGATATCTTGTTGAACACTGTGCATCCCAGCTGCAGGAATATATAATTTATCGCCACTGATTTGAACATAGCTATTCCAAGTGTTCACAGCATGAAAGCCCGGAGCATTTTCACTCGAAGAAATTATTGTTACTGCTCCCTCATGTCTCATTACCTCTAAAAATGTTTCATTCATCATTTTGCAGACCTCATTTCAATTATCGTAAGTTTATTATAGCACCACTAAGTATTTCGTTCACTTTCTAGTAATAAAAAAAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //