Array 1 1950659-1951170 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059907.1 Escherichia coli strain 181.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1950659 29 100.0 32 ............................. ACGTAACAAAACAACAGCAAAATATTATCGAC 1950720 29 100.0 32 ............................. GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT 1950781 29 100.0 32 ............................. GCAATTAATTTAGTTCCAGATGCTGCGAAAGA 1950842 29 100.0 32 ............................. TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA 1950903 29 100.0 32 ............................. AATGATTGATATAAATCTGTGTACGGTGTCCG 1950964 28 89.7 32 .........G..C....-........... CTAGGATAAATTAAAAGACAAAATTGCAGCAA 1951024 29 93.1 32 .........G..G................ GAGCGACCAGTATCAAGATCGACAGGTTTTGC 1951085 28 89.7 30 .........G..C....-........... ATCGATATGTACGTTAGCGAGGATCACGCA 1951143 27 89.7 0 ...........--...............A | G [1951151] ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.8 32 GAGTTCCCCACGTCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAATCAAATTTAATCAAAGTGTTATTTGTATAACCCTTAAACCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1978220-1979773 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059907.1 Escherichia coli strain 181.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1978220 29 100.0 32 ............................. CATTGAAAACATTGCCTTTATTTTATTTTTTG 1978281 29 100.0 32 ............................. GTGCCGCCGCTGGGCACTTCCTTCCCGTGAGT 1978342 29 100.0 32 ............................. CCCTGATAGCGTCCAGTTGAATGCGCGCCCGC 1978403 29 100.0 32 ............................. GCAGGCACGGGCAATATCAGACTCGGTCAAAG 1978464 29 100.0 32 ............................. CGTCTGCATACCCCTGTTTTTGCTCTTAGCCA 1978525 29 100.0 32 ............................. TCGGTAAACGACTGGGTGCATAAATACAAGGG 1978586 29 100.0 32 ............................. CTCGGTTGTTTTCATATTACCGGCCTGCCACT 1978647 29 100.0 32 ............................. ACAATATCCCGGACCGGGCGCTGATTTAGTCA 1978708 29 100.0 32 ............................. CTTTTCATCAATCGGAGCATATTTGCGATCGA 1978769 29 100.0 32 ............................. CGGACGGTGGGAATATAGAAAATCCGTCCACC 1978830 29 100.0 32 ............................. TTATACTCTTTTCATCGACTAAGGAGGGGAGG 1978891 29 100.0 32 ............................. CAATAACGCAGCATCCAGGAAGCTGTTTCCGC 1978952 29 100.0 32 ............................. CGATCGGTGAAGAGGTCCGCGAAATACTCACT 1979013 29 100.0 32 ............................. GCGATAGTTGATTCAGCCGCGCCAGCGAATGT 1979074 29 100.0 32 ............................. GGGCCGCCGCGAATTTACACACGATTCAATAC 1979135 29 100.0 32 ............................. AACTGGTGCGCGACGGCTGGCTAACAAAACGA 1979196 29 100.0 32 ............................. TTTCGCGGTTGCGCAGAGCCGCCGCCGAGGCA 1979257 29 100.0 32 ............................. CGTGGCTGCGCTGGCCGTTGCAGCAGTTTGAT 1979318 29 100.0 32 ............................. CGTAAACGCCCCGTCGCCATTAATTTCGGGGT 1979379 29 100.0 32 ............................. TGGGATGAGCAAATAACGTCGTTTCCTAGAAA 1979440 29 100.0 32 ............................. CCGCCGTGCCAGTGATCCTCATACGGCCTGTT 1979501 29 100.0 32 ............................. AAATTAAGAACGGCGTAAACGACGGCAGCATG 1979562 29 100.0 32 ............................. GTGATGATTCAGAGCAGACATTAGCCCGCGCT 1979623 29 100.0 32 ............................. GTGATGATTCAGAGCAGACATTAGCCCGCGCT 1979684 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 1979745 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTTGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCCTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //