Array 1 177890-177257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXLY010000010.1 Pectobacterium brasiliense strain SR7 NODE_10_length_195596_cov_28.072902, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================================================================================================================================================================== ================== 177889 27 89.3 32 T.........-...G............. TATGCCATGCAGATCGAGGACTCGACGGAAGT C,GA,T [177872,177883,177886] 177826 28 100.0 32 ............................ ACGGGATGCCTGTATTCATAAGTCAGGAAAAT 177766 28 100.0 32 ............................ TCGCCAGGCTCGGCGCTCACTGCGTCCCCCCG 177706 28 100.0 34 ............................ AGTTTAGCTGCGTCAAAGCTGCGTGTGGATCATT 177644 28 92.9 32 ...A.......C................ GCCCAGCATCTTGTCCTCAGACATTGCATGGC 177584 28 96.4 32 ..........A................. GTGACGTCATCTGCCGCTGCGGGAATTTTTGG 177524 28 71.4 212 ...........C........TGA.CGGT ACTGAATCCAACCACCCCCATTCTTTAGCTTTCTAAGCTGCCTATACGGCAGTGAACTTCTTTCAGGTAATCAGCGAAGAGTTGCGTTCTTTCTAAGCTGCCTATACGGCAGTGAACGGCACTTGATTGGGCTGTGGCTACGGCTGAAGTTTCTAAGCTGCCTATACGGCAGCTTAGAAATGGGTGCGGTTAGAGGACAAAGAACGCGCGCT 177284 28 82.1 0 .............C......T...TCC. | ========== ====== ====== ====== ============================ ==================================================================================================================================================================================================================== ================== 8 28 91.5 58 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATCCGCCTGAAGCCGAAAGCCAGAGGCTTCCATCTGGTGACTGACGAAATACTGGCGCAGGTTACTGGACTGCGTCAGATAAACGTCGGGCTGATGCAGGTGTTCATCAAACACACCTCGGCGGCGCTAACGATTAACGAGAATGCCGACCCCACGGTGCGGCAGGATTTCGAGAGTTTTTTTAATCGTTTAGTGCCGGAGGATGAGCCGTATTACCGCCATACATATGAAGGTAGCGACGACATGCCGGCGCACCTAAAAGGTAGCCTGCTGGGTAACAGTCTAACGCTCCCCATCACCAACGGACGCCTGAACATCGGCACCTGGCAGGGCATCTACCTGTGCGAGCACCGCAACCACGGCGGAAATCGCTCGCTGGTTGTCACCCTCCACGGGGAATAGCTCTCAATAATGCGTCGCGGCAGCGACGCATTTCGATAGTATCAAGCTGCCTGTACGGCAGTGAATGCACTTAATCTAGCCCATTAGCTAATCCCTCC # Right flank : CGCCTTAAGTGCCATTATCTGGCTATTATCGAGGTAACACTATCGTCAGTGTTTGATGTGTTATCGCCTTTAAATAACGTATTTTTGATTCCCTTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGTGGGATGGAAAATTGCGGATTTGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAACCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACACTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGATGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTTCCTGTACCGATCCCATC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //