Array 1 30957-29555 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAGY01000037.1 Nostoc linckia z2 scaffold37.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 30956 37 100.0 36 ..................................... ATCGAAGTTGCTCAAGCTTACGTTTCTCAGACTGGT 30883 37 100.0 36 ..................................... GTTACCTCAAGAAGTTGTAGTACAAGCAATTAAGTT 30810 37 100.0 36 ..................................... TGAGTTCATAACTCTATCAAAAGACCAAATAAAACT 30737 37 100.0 34 ..................................... GTGATTCGTGAGATTCAAATTCTGCTAAATGGTG 30666 37 100.0 34 ..................................... TCTTCATCTATCTCGCATGGGTCTACAGCTAAGA 30595 37 100.0 35 ..................................... ATAGGAAAAGGTGAAAACCCAGCAACCGACAAGGA 30523 37 100.0 34 ..................................... TTAGATATTGACTATTACACTCAGAGTAGTTTAA 30452 37 100.0 38 ..................................... ACTGGTGTAGCAACTTTAGGAAGTGCCGCAGTGACCGG 30377 37 100.0 36 ..................................... CAAGAGAAAAGTATCGTGACGCCACTAGATTAACAA 30304 37 100.0 35 ..................................... GAAAACTTTGCAGAAGATGAACAGCTAGACTTTGC 30232 37 100.0 32 ..................................... GAATTCTAGGCATATTCCCAATCATCGCCAAT 30163 37 100.0 34 ..................................... AGAATCCATGCGATTGCTCGCGTCTTTCCCTTTG 30092 37 100.0 31 ..................................... TGGATGGTATGGAGTGCTACCAACTGTTAGA 30024 37 100.0 39 ..................................... TTCGAGAGTACGCAAGACACCTTACAGAAACTTGTTGTA 29948 37 100.0 35 ..................................... CAACTCAAATTAATCGGTGGTAAAGGATCTTCTGA 29876 37 100.0 35 ..................................... CCCAGTCAATAAAAATTCCAGATACAGGGTAGTCG 29804 37 100.0 33 ..................................... TATGAGGAGAATAGCGTTGAATATTTACAACAG 29734 37 100.0 34 ..................................... ATCATTTAGGCGTGATAACCCCATAAATGCCTGC 29663 37 97.3 35 ...........C......................... CTGATTTACTGCGAGTTAAGGCAACATAAAGCAGA 29591 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 20 37 99.9 35 GTTACAATTTTTCTTAATCCCTATTAGGGATTGAAAC # Left flank : CAATAAATATTCTGAATTGTTCGCTGCAAACTTTTGTATCGCTTTTCATGTAACTGCATACCCTCAGGTAAAGTTAGATCGGCGGCTATAAGTAGGCCGATGTAAATAATTATTGTTGGGATAAGGCAGTTCTTGCTGGGAGCAGGGAGCAGGGAGCAGGGGGAGAAAGAGTTTGAGCCTTATTTACTTTTCTTTGCATAGTTTGGTTTTATTTCACCGACTTACTTAGTCAAAAGTGAAAAGACCAGCAAACGCCACAAAATTTTTATCCAAATGCGCGGATGGGTAGGTGTAGAAAATCAACCTTTGACAAAAATCTCTGTGTTCCTCTCAGCACAAACCTTTCAGGCAAAAGTAAATCAAAATCACCCGCGCATCATGCCCAGACAGCATTTCAGCGATTTAGTGTCAATCAATTGAAATTTTCTAGTGATACAATTGACCCATCCGCGCAACTGAACCTTGAAAACCAAATACACATTAGCTCTAAGGCTTTGGCG # Right flank : TTAAAATTATTAAGTCAACCATGAAAAATAAAGGCGTTGCTGATTGAAAGTATGAATTACTTTCACACATAGTCAATTAAAAATTATTTAAATAATTGTATATTCACCTTGGGCGAGAGCATCTAACTTCGCTCGGTCTAATACCAAAATTTTTCCGCCTCGATGATAGCGGACGCTCGAATGGATTTGCTTGAACAATCTTACACACTCTTCATAGGTAATTCCAATGCTACGAGCAATTTGATAATATGGTAAACGCGATCGCAACAATTCTCCCTGTTCAGTTACTTCCGTTCCTTCTGTAAGTGCTGAGAACTTCAGGTATTGCGCTAAACGCACAATTGCGCGTTCTGAAACTAATCCATGCACCGTTTGATGTAGATGCTGGAGACGCTCTGTCAAAACTGCAATAATCCGCAAAGCCACTTCTGGAGTATGGTGAATCAGTGCTAGTAAAGCAGTACGCTCCAGCATCAGAATTTTGCAGTTTTGCTGTGCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTTTCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 5052-5467 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAGY01000047.1 Nostoc linckia z2 scaffold47.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 5052 36 100.0 42 .................................... TTGTTCCATCTGAATGCTGATAGAACCTATATCTTGTAAGTT 5130 36 100.0 40 .................................... ATATTTGAAGGTAGAGATTTTGTTGGAAGTAAACATTTAC 5206 36 100.0 38 .................................... TTTTTAGTCGTTTCAGTTGTTAGTCGCTCTTGCTTCTT 5280 36 100.0 34 .................................... TTAGAAGCCGTTGAACGATACAAGGTAGATATAG 5350 36 100.0 46 .................................... AGGACTCATCTTGTCTAAAAAGCCAGTTCCATTTTTTACAACTACA 5432 36 94.4 0 .......G......A..................... | ========== ====== ====== ====== ==================================== ============================================== ================== 6 36 99.1 40 GCCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Left flank : TAGTTATGAGCAGTTTCAACTGGGATTGTTTATGATGAGTCAGCATATTATTGGTGTAGCTACAAAATGAACAAGTAAGTTTTTAATAATTATTTTTTGGTAATATAAAGTTAATTTTTCAATATTACATGGGGAAAAATCGAACCGCAAAGTACGCAAAGAGATAAGAGTTGAAGTAGGTAGCTATGATTAAACAAGTTGCAAGTGGCAAGTATAGTTTTGTAATGGGGATTTTAACGCCACAACAAAATTTGCTGGTTATAAAACTGGGGGACTTAAACCCCCAGAATTTGTTAAATCTCAGAAATTATTGTTTCTGTGCGGCGGGGTCGAGTCTATGGTGCAAATGCTGATTCTCTCGTTAACCCGGCCGATATCCTTCTACACAAGGGTTTCAGAGTTTTTCGCCTCTGCTTTTTCTCTGGAAACAGCCTTCGGTTTCTACCCCGTCGCAAATGGCGTCTGGACATTAGGTGGTGTCAGGGTTTAAATTAATAGGG # Right flank : CCAGCAATCTTTGTTCCATACCAACATTACCCTGCAAGCCACCTGTGTGTACCAGCAGCAAACTTTTGCCTTTAGCAAAAAAACCCTGCTGTAATAAATCCATCACGCCATAAAACATTTTGGCAGTATATACATAATCAAGAGGTACATTGTGCGCCGAGCTAAATTCTTGGCTGAATCGTAGCAACTCCTGATTGACTTTTGCATAGCCGCCGAAGTGATAATCACACATTAATTCCCAACAAGCGGGAGAATTATATGGACTCGGTAAACCAGAGGCGAGGTAATTTGTCAAGAGATTTTCTATTTCTTTTCCTAGAAAATTGCCATTTTTCAACACCGGAAAAGCGATCGCTTTTTGTCTTTGATTTAAAGAAAGTGCAATTCCAGCCAGCGTTGTTGCAGTACCGCAGGCTAGGCAAATATAATCAAAGGCGTAGCCAGCGGTAGACATCCCTTGATTAATTATCTCTGTACAACCGCGCACGCCGTTTAAATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 116101-114413 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAGY01000005.1 Nostoc linckia z2 scaffold5.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 116100 37 100.0 34 ..................................... AATGACCCAGAGCTTCAGGCAATGCAACAACATT 116029 37 100.0 33 ..................................... AGATAATTTCTAATGACACAACTTAAGCCAGTT 115959 37 100.0 41 ..................................... TTGTGGGTAGGGATTAATCAAATCTTTGTAGCGATTGTAGG 115881 37 100.0 37 ..................................... ATGCCCCTCTGGGTTGCTTACATGACCTTTAGGCGCA 115807 37 100.0 33 ..................................... AAAAGGATAATGGCTAATGGAACCTTCCTTGCT 115737 37 100.0 34 ..................................... AGAGAATGCAGAGGACTTATACTTGATGAATCTG 115666 37 100.0 34 ..................................... CCATATTTATTATCCTTTTAATATAAATTATTAA 115595 37 100.0 36 ..................................... AATATTAACTTGCAAGGAGAGGACAATTTATCACAA 115522 37 100.0 35 ..................................... AAATCAGAAAAATTAATATACTCAAATCCCCAATC 115450 37 100.0 34 ..................................... AATATCAAATCTGCTGTATTAGCAATCTCTAAAT 115379 37 100.0 33 ..................................... ATCTGCTCTTACTTGAGAAACTGTTCCCGCTTC 115309 37 100.0 34 ..................................... AAGTACTGAGCGGTTCCCTGGCTACTACGATCGG 115238 37 100.0 35 ..................................... ACAGACCTTACAAGTGTACCTGTAACCCGTGGAAG 115166 37 100.0 34 ..................................... CTGGCTCAGGCTGCCACTTAATCACCACAAAAAT 115095 37 100.0 34 ..................................... TTGGAAGATGATATTAGAATCGTCGAGGGAGCGA 115024 37 100.0 33 ..................................... ACCTACCACCAGGAATGATTTGAGGGCATTGCC 114954 37 100.0 40 ..................................... CTTTGTAGAACAAATTGCGCTGTTCGACCCTGACATCAAA 114877 37 100.0 35 ..................................... ATCATGTTGAGCACCCTATCTAAGTGCAGCCAATT 114805 37 100.0 32 ..................................... ATCTTGTGTGGCATCTCCTTCCTCGGCCCCCA 114736 37 100.0 38 ..................................... CATAGGGTTTATGCGAGCGAGTGTTGCTAGCGCTTTGG 114661 37 100.0 33 ..................................... GGCTAACCAGAATTAAGCAGAAACCGACTACTA 114591 37 100.0 34 ..................................... ATAAAGCACGAGCATCGGATCGATACTTGGCACT 114520 37 100.0 34 ..................................... GATTTTAATACTTATCGCCAAAAATTTAAGGCGG 114449 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 24 37 100.0 35 ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : CCAATATGCCAGGAGCCGTACCTTGGACAGCAACTCAGGCACTCAATAACAGTACATTACCTTATGTTGTGCAGTTAGCGAACTTGGGAATTAAAGCATTAGAAGTAAACCCAGCTTTAGCTAAAGGTGTGAATGTGCAAAATCATAAATTAGTGCATCCTGCTGTGCAAGAGGTTTTTCCTGATTTAGTGAGTTAGAAGCTGTGCAAGTGTTGGGCGATCGCCTATGCTAATGGTGGCAATCTTCATCAATTAGACTAATTTCGTTACCAAATGCGCGGATGGGTAGCTGTAGAAAATCAAAGCCAGCAAAAAATGGCTGCATCTCAATGTGTACAAGGTTTTGACGACTATAGAACTTTTAAACCATCCGCGCACCTTACGGAGACTGAGTTTCAGCAATTTTGAATTGTTTGACTACCATTTCCTGTGTTATCATTCTGTACATCCGCGCAACTGCACCTTGAAAACCAAATACAGCAAGTCTTTTTAGTGCCGGCG # Right flank : TCTGATTTTTGAGTTTGTACGAAATAAAAGCCTTGAAGTTACGCGGATTCTCAATGCAGAGGAAGATATAGCAAGCATTTGAGAACAAGAGGTCTATTGAATAGCGATCGCCATTATGATTGTATCGGTGGAGTACTGGCATTTGAGGTCATTTTTGCCTTATCGCCCTCAGACTTAGTACAATATTTCACCCATTCAGTGTATGGCGATCGCTTTCCTCTTTGGATATGCTTTAAGAAGTATTAAAACTAGGCTCCTATTTTTCGGTATCCGTATCTGAGCGATTGTAATTATTAAACTGACAAACTTGAGAAATTTAACAATGAAATCCTTTTCTATTCCCTTAATTGTTGTAATGAGCGCACTTGCTCTTCCCCAGAGTGCCTATGGTAACGAACAGAATGTCCCAAATGCAACAAGCGATGGCAATCAGGCTGAAGCTTTATTGACTCAACCCGCCTCCATTAATACTAAGTGGAGAAATTTTAGCGGACAGACTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 155402-153472 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAGY01000007.1 Nostoc linckia z2 scaffold7.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 155401 37 100.0 34 ..................................... ATCAAAAAGCCCTGGAATGCTTTACACGTTCCAG 155330 37 100.0 33 ..................................... ATTCTGCTGTGCCGAATGTCAAGCCGCCGTCAT 155260 37 100.0 35 ..................................... TAACCTTGGATAAATCTGTCCTACTGTTGGAAGTG 155188 37 100.0 34 ..................................... ATCTCGCCGATTGGTTGAATTAACACCTACACTT 155117 37 100.0 38 ..................................... TCAATCAAGGCTTTCAAATCCTGTTGTCTATGTTCAGA 155042 37 100.0 35 ..................................... AAAAAGTCACTCTTTAAACGTCTTACATTTAACAA 154970 37 100.0 33 ..................................... CAACAGTTACATCCCAAATTACTAGCGCTTTAA 154900 37 100.0 37 ..................................... ACACGCTCGAACGGCTTGCACGTCAACAGCAAACACT 154826 37 100.0 35 ..................................... AGTATAGTTGCACCCTGGATTAATAAAGAAAATAA 154754 37 100.0 36 ..................................... TTTCATTAGAAACACTAGCTTATATACCGTACTTTG 154681 37 100.0 35 ..................................... TTTAAGTTCTATACCTGAGATTGATGTATGACAAC 154609 37 100.0 37 ..................................... ATAACCTTCCTATTTCGTAATTACCAAATCCAAATAA 154535 37 100.0 34 ..................................... TCTAGAAGATTAGGACAAAGATAAAATATAAGTG 154464 37 100.0 38 ..................................... ACTTATATAAAATCTCTATATACCCGGTTAACCCCAAA 154389 37 100.0 37 ..................................... AATATAGAGGGCAATTAGGGGCTTATTGGTGTGCTAG 154315 37 100.0 37 ..................................... GATAATATGTTTTCTGGTTTTTCAGTAATATATACCC 154241 37 100.0 34 ..................................... TCTCGGCTGACATCTCCCAAAAGTTATCTTGATT 154170 37 100.0 37 ..................................... GTTTTACCACTTCCGTCTAATCCTTCAAATGCGATCC 154096 37 100.0 36 ..................................... TGAGGTATCCGCCATTGCTTCGGGCTTCTGACTGAA 154023 37 100.0 37 ..................................... TCTTTCATTGATGTGCGCTATCTCTACTGGACTAGGA 153949 37 100.0 35 ..................................... TCTTTGCTGGTGGGACAATCTGTAATTCGTGGTGA 153877 37 100.0 37 ..................................... TTAATTCTGTTTGTGCTTGTCTCACTTGCTCTTTTAA 153803 37 100.0 37 ..................................... AATTTTTACCGTTTTTACGTGATTCAAGAATTTCTAA 153729 37 97.3 34 .............C....................... ACTGATAACTGATTACTAATAAAACTATTGTGAT 153658 37 100.0 36 ..................................... ACGATAATTTTGTTCTTGAGGATGTCTCGGCTATTC 153585 37 100.0 40 ..................................... GGCTCAACTACTTACTCAGTGGCCGGTTTGCCTGATGCGA 153508 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 27 37 99.9 36 CTTTCAATTAAATGAAACCCGGCAACGGGATTGAAAC # Left flank : ACATAAAATGCTTTGTGGTTACGGAACTTGGACGCAATACAGCGTATTTGAATGTTTTTTGACCGCCGTACAATTTGCGAAACTCAAGGTGCAAGTTGAAAAGTTGATTAAACCAGCCGAAGATTCAGTGCGTATCTATGTGTTGGATGCTGGCGCAGTGCGTAAGACTATTACCTACGGTTCCGAACAACCTCGACAACAGGAGACGATAATCTTATGATGTTTGACTGTTGATTGTTGACTGTTGATTGACAACTTCCACAACAGGAGACAATAATATTATGATGCTAATACAATGCTAGTAAAGTTTTTTGGCAGGGGAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCGTCAGAACCTTGACAATTGAATATTTTTAGCGTTTTGAGTTCTGTTGAGTTCGCTGTTTACAACGGCTGAAATCGACTTTGAAAACACTCCCGCCAAATTTGCTTCTAGAACTTGGCCTATAACTACGTTCTGGCTGGCGGA # Right flank : AGCTATGGCAGATATAACAAACCACAGGACAAACTTTCAATTTCAATGAAACCCGATCGCTCTATTACAACCAAAAATCTCAACACTAGGCAAAATAGAACTGAAAACGGTTTTCAAATTATCATAATTAAAAATTCCCATGCTTCAAAGTCAGCGTTTATCATAAATAAAAAAATTATTTATTATGAATGCTGAAGATTTTTTCCACCAAGGATTAAACAAAAATTTGCAAGGGGAATACCAAGCAGCCGTTACAGCTTACACCCAAGCAATTAATCTCAATCCAAATTACGCCGAAGCATACCATAATCGAGGAATTATTTCAAGTAGTCTCACAGATTATCACAGTGCGATCGCCAATTTTAATCGCGCCATTGAAATCAATCCCAATTTTGCCACAGCCTACTATCACCGCGCTAATGCACGCTACTTTCTAGGAGATTACGAACAAGCCATCGCTGACCATAACCAAGCATTGGCAATTGACCCCAATCTCGCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTAAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 166835-169978 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAGY01000007.1 Nostoc linckia z2 scaffold7.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 166835 37 100.0 35 ..................................... ATCACTATGCATAGCCGTTCAACATAGTCAAAACA 166907 37 100.0 35 ..................................... AAAACTTAGGGTGAGTTTGCCAAACAGTGTCACCA 166979 37 100.0 39 ..................................... TGAAATGATTGGTTATAGGTTCCATTACACACCAGCCAT 167055 37 100.0 36 ..................................... AAAATCTTACCGTGATTTATACTCTGAAGGTGTTAT 167128 37 100.0 39 ..................................... AAACATCCTATGTAATTGTCAACTATTGGCACGGTTTAA 167204 37 100.0 37 ..................................... GTGAAGCTACACCCTACGAACTGCTAACAGATCCTAA 167278 37 100.0 37 ..................................... ACTTGCCACCGGCACCAGGATGAATCTCAAGAATGGA 167352 37 100.0 39 ..................................... AACTTATGAAGGGTATGATTGTCTTATTCCAGTTAAGGA 167428 37 100.0 39 ..................................... AATGAGAGAAGACAAGCAGCACAAGAGCTATGAATGGCA 167504 37 100.0 36 ..................................... AACCTCGATAAAAATGGTAGGCCTATTGCAACTCAG 167577 37 100.0 39 ..................................... TGGGTACTGTGGGAAGTCTTACAGCGGGGATGCTTGGGA 167653 37 100.0 40 ..................................... AATTTTCCACCGTGATTTGTACGCCCAGAGTGGGCATAAA 167730 37 100.0 38 ..................................... TGGTCGAAGTATCTTCAGCGCCGCCGTCGCTACCCCAG 167805 37 100.0 36 ..................................... ATAAATAGCATCTGCAAGCTTGTTATCAGCAATCAA 167878 37 100.0 39 ..................................... AAAATCAGACCCCATCGTGGGAGTACGCATTCACAACCA 167954 37 100.0 36 ..................................... AATTAATAATTATCAAAAAAGAGTCTGTGTCAGCTA 168027 37 100.0 36 ..................................... ATAACATAACCTATATTGGAAGTGACAACTATTTAC 168100 37 100.0 37 ..................................... ATATGGATCTGGAGTACCGTACTCGTTCGGATACGGA 168174 37 100.0 39 ..................................... ACTAAACTGTGGCTTGCGGGGGAACCTCCAGCACCAACA 168250 37 100.0 37 ..................................... AACTCTTCAAAGTCTTTGTACCCACCTTGGGGTTTAT 168324 37 100.0 36 ..................................... GATAAGTTATGGCACTCGTTAAATATAAGTGACTTA 168397 37 100.0 33 ..................................... ACTTACAAAACTCTGCAATGTTTGAAAACTTAG 168467 37 100.0 37 ..................................... GTCCTGAACAATTTATCGCCGATTTTGACGAATCGAC 168541 37 100.0 37 ..................................... ATTATCCCCTTTATTCCATTGATTCTTCAAATACCAG 168615 37 100.0 37 ..................................... GATTCCGCTTGTCTTTTTTACCAGTAAGGGCGATCGC 168689 37 100.0 35 ..................................... TTGAAGCGTAAAAACGAGTATTAGAAGAATCTACC 168761 37 100.0 38 ..................................... AATCAAAGAGCATTATCACATGATTAATATCACTGGCA 168836 37 100.0 36 ..................................... CTTTAGCGTGAGTGATAGCTCTATCTGTCAGAACAT 168909 37 100.0 36 ..................................... CAGCCCGTAACCCGATCGCTGATCGAAGAATAGTTG 168982 37 100.0 39 ..................................... TTTTGTGGTTATGTACGGTTTTTGTGTTGCGATCGTAAT 169058 37 100.0 37 ..................................... CGCCAGATGCTAAACACCCTGCATATGAGTATGCCAA 169132 37 100.0 36 ..................................... ATCGCATCCTAGATATAGATGTCGGCGTCACCCCTA 169205 37 100.0 40 ..................................... TATGCAGAGCATCTAATACCGTACCCCACACGCACCTAAA 169282 37 100.0 37 ..................................... AACCGCCTTGACGGACAAGTTCGCTACATTACCGATC 169356 37 100.0 36 ..................................... CAGTGTGATTGTGGCAGGATCGTTGAAGCAACTAGA 169429 37 100.0 34 ..................................... TGAAGTTTATACCCAAGTTACCGAGGCGGTTTAC 169500 37 100.0 36 ..................................... ATCGCTGATTACTAATCCAAAGAGCAATTATTCCTC 169573 37 100.0 37 ..................................... CGGATCTAAAACTTGGAGCGACGATGACTTGCACTGG 169647 37 100.0 38 ..................................... ATTCAATGGGCGACTGATTGGGGAATCGCCACCGGACT 169722 37 100.0 38 ..................................... GTTGGTGTGGGAAGTTGTCGCTCTGGCGTAGATCGTTG 169797 37 100.0 38 ..................................... TAGCATGGATGAAAAACAAGGCACGGAACCCAACTTGA 169872 37 100.0 33 ..................................... CAACAATTCGACAAGATATTGCAACCTGGGCAG 169942 37 97.3 0 ......................T.............. | ========== ====== ====== ====== ===================================== ======================================== ================== 43 37 99.9 37 CTTTCTATTAAATGAAACCCGGCAACGGGATTGAAAC # Left flank : GCGATGACAGAGGACAAACACATCCCGATGGTGGCTGAAGCTTGGGAGCCTTTTGAGCAACAAGACATTCAGCAATACACCCAAGCGGACAATTCTCAACTCCTGGGTTGAGTTGAGAGTAGAGGGGTTGTAAAAAAAGCTTCACCTGACTTACCCTGTGTTATTTGCACCCAGTTTAGTACTGGTTTCGGGAATATTGGCATCAAAAATTGATATCAATGCTTTTTCTTTGCTTGACCCTAGATAACTTTTGTAAAGTTAGATTTTGTGGAATTGGGAAAATGAGCTTATAATCTGAACCAAGTTAATTTTTGGCAGGGGAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCCACAGAACCTTGACAATTCAATACTTTCAGCCTTTGGAGTATTGTTGAGTTCGCTGTTTGCAACGGCTGAAATGGACTTTTAAAACAGTCCTGCCAAATTTACTTCTAGAACTTGGTTTATCACTAGGTTCTGGCTGGCGGA # Right flank : CAAAATAAAGAGTGCTAGATTTTCACTTAGCACTGTCAAGATTTTTAATTTATCTACTATTTTTGACCTTGATTAACTCTTTTTTCCAATTCAGCTTCAGCCTCTTCAATCGACATTAGTCTTGGATTTGGATTAGCCGCGTGCAAGCGATCGACATAAGCATGAAAAGCTTCAGTATTTTCCGGATTTTGCAATACGTAAGCTCGTAATTCAGCATCCGTCATGTTTGCAAAATTGGGCTGTGTCATTTTGTAACCACCTCCCCGTTAGGATAAATTTCTATCTCTATTGTCTCTTTGACTCAATACGGTTCAGTTAAGGCTAAAACTCTTTGTAAAGATTAATTTTTTTAACGAACCGCAGAGGCGCAGAGAACGCAGAGAGAAAGAGAAAATGCTTAACTGAACTGTATTGCTTTTTGACTAACGTTACTATGCGTTTTGTCCTTTCGTCCATTCGCACTAGATTTATTGGTCGCAGCAGATTGCTCATTCTCACCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATTAAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 27645-28711 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAGY01000013.1 Nostoc linckia z2 scaffold13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 27645 36 100.0 37 .................................... GGCAATATCTTGCAACTGTTCTGGAGAAAAACTTTTC 27718 36 100.0 36 .................................... TAACGCATGGATCTTCCATTACCATTACAACTTCTT 27790 36 100.0 36 .................................... AATCTTTTGTCTCTCGATGGAGGGTGCTTGCAGATT 27862 36 100.0 40 .................................... TTGACACTAGAAGTTCCTCCTGCGCCGCCTTGACCATTAC 27938 36 100.0 37 .................................... GCTATAAAAACAGCATCGGAAGCGGGTATTCCAACTA 28011 36 100.0 34 .................................... TTTACAACAGAAAAAACACGGATTCTATGTAGAA 28081 36 100.0 38 .................................... AAGATTCTTTTTGCACGTTGTAAATGGCAGCAGGGATT 28155 36 100.0 39 .................................... TATTTGCAATACCCAGTCTTTTTTTGTTTTTGGCAAAAG 28230 36 100.0 41 .................................... TAAAGTTGATGGTTTTTGTCGTCCAGTGCTGTGACCTTCTC 28307 36 100.0 38 .................................... ACTTGTCCTTCCAACTTTGTGGAAAGACTTCTCGACTC 28381 36 100.0 37 .................................... CACCAAGCCAGTCAATCCTCAAAGTTCTTGAGGTTGC 28454 36 100.0 40 .................................... TCTTCCAACATGTTGTCGCCAATAATGGAAAAGCCGTTTT 28530 36 94.4 39 ..........C..C...................... CAAATCTCATTAGCCCAGTTCCCATTTTCGGAACGGGGT 28605 36 97.2 35 ..........C......................... AATTTCTTTGATTTTTGCTTTGAACTTCAAGTTTG 28676 35 88.9 0 ..........C..............C...-...T.. | T [28709] ========== ====== ====== ====== ==================================== ========================================= ================== 15 36 98.7 38 CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Left flank : GGAGCAAAGGTTATGGCTGTATATTTGGTCACGCTTGCTTTTGTCACTGGTTGCAGTCTTGTTTAAATTACTGTAGAAATTTGAGTTTTTATTCAGTGGTTATACTTTGTAATAATTCTCGATTTGGGTAATTAGGAGTTATGTAAGGGTGGGTGAGTTCTTGTGACTTTTATATCTTGGCGGAAATTTTGAGGATGTAAAGGCCTTTTCGTGCGAATGACGAAATTTTTTTTAGAGATGATTTATTTCACGCAGAGGCGCAGCACTTCGGCTACGCTCAGTGACCGGCGCGGAGAGGATGAGGAGTTTGAGATGTTCATCGACACCAGTCGCCAAATCGCTACAATCCTATATTTTTCGTTGAGTGGTGTCGATTCCTTACTGGATAATGATTTGAGGTATGTGTGTTGTTCAATTTCACACAACATATATAATGTTTTTTAGAGTGGTGTCGATTTGGCGGCTGAAAGCCTTACGGGGCAAAGGCTCCTGAACGAACT # Right flank : CCAAAAATATCCAATCTTGTGGGGTGGGCGTCTCGCCCGCCCAGTCCATAGGGCGGACAAGATGTCCACCCCACAAGAAAAAATCCCCGACTTTTTAGAAAAGCCGGGAATTTTATTTTTCTCAATTGCTTATTGCATTAAAATCTGACGGATTAAAATACTCATTACTTCGTCAGCATTACCAGTTGGTACTAATGGACTCCAGTCGCCGACGCTAGCGTAGCCAATGATTTGCAGATGGTGAATTGTGCCGATAACTGCTTTTGAAGAACCCATCAATAAATGTTTAACCGGTTCTCTTTTGGGTAATGGATTTTGAGCCGGTTGATTTAAGACTGGTATATTTAAGTTCTCGCTATCCAAGTATTGTTGCAGTTCTGATTGATTTTCTACAAACTCTTCTTCTTGTGCCATGATGATAATTAACTCTCAGAATGGGGGTTTAGGGAAAGGCGATCGCAAGCTCTTGCCGGAGGGCGATCGCCTTTCTTATTTGCATA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 63985-64457 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAGY01000012.1 Nostoc linckia z2 scaffold12.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 63985 37 100.0 34 ..................................... TACTTGTTTGCCAAATGCTTGAATGCTCCCGAAG 64056 37 100.0 36 ..................................... CTGGCTGTAACTTAGCTTCAAAACTTTCAGCTTCAA 64129 37 100.0 34 ..................................... ACTTTATATAAACCTGAGTTTAAGTTTACCAAAA 64200 37 100.0 33 ..................................... GGGATAAAGCAGACCCTTACAAGCTAGAACCCG 64270 37 100.0 35 ..................................... TACTATATCTGGCAATCCACAGACGGGAAGCATTA 64342 37 100.0 42 ..................................... TGCTTGGACTGAGATTTCAAATCCTGAATGCGCCAATTCTGC 64421 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 7 37 100.0 36 ATTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Left flank : AATGAATGTTGTTGTGTCTTATGATATTTCTGAAGATAAACGCCGTACCAAAATTCACAAAATTCTCAAGTCCTATGGACAATGGGTACAGTACAGTGTATTTGAATGTCATCTGACAGATACTCAGTACGCAAAATTGCGATCGCGTTTGAACAAGTTAATTAAACCTGAAACCGATAGTATACTTTTTTACTTTTTGTGTGCCTGCTGTCTCGGTAAAGTTGAACGTATTGGTGGCGAAAAAATTCGTGATGACTCTATTTTCTTTGCTGAGTGCGCGGATGGGTAGATGTTGAAAACCAAATTGCAGCAAGCAACCTTCAAATTCCTCTGCTGCAAGAGTTTTGGGGAAAATAGCTCAGAAAGTACCCGCGCACCTTATACAGACTAGGTTCTAGCCATTTTCCTCAAACCCAATGTCCATTTCACATGCTATGATTTCCTCATCCGCGCTACCGAACCTTGAAAACCCAATACAAACAATGTTTCAGGCTACCGCC # Right flank : CACAGATGAAACCTAATGTGCAGAGATAGTTAATACATCGCTAATAAAACTGAGCAAACCTCTGCGTACCTTTGCGCTGTCCTCCGCGCCCCTCTGCGTTTAAAAAATTATTTCCACACCTCACTTAACTAAAAATCCCTATAAAAAAGAGAGAAATTAAAACTGATTCCTCAATCAAATAGAAATCATCACATTCAATAGTGAAACACCAATATCCAGCATCCAAAATCCGAAGCTGACTATAGTGTTAGGAACTTTTTTTTTAAGAATTTACCTCCTGAAATATCCGAAATTTGTGGTAATTCAGTTCTATTTAATGATTCAACAAAACTCAAACCCAGAGACTTACTAGAAATGCTTTGAGTGTAGCTAGCATTAAGATAACGAATATATTGTGACTTTCCTGCAATATAACTTTGGAAAAAAGGCAAACTTAAAACAGTCATATAACGACGCGCTTGGGAAGCATCGCCAATCATATCAGCAGGTAATGATACTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 1038-209 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAGY01000124.1 Nostoc linckia z2 scaffold138.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1037 36 100.0 37 .................................... TTTACCACTACCTCAGCAAGTGGTTTTTCGTCGTCTG 964 36 100.0 37 .................................... AAGAATCACAAAAAGAATGAAACAGACGACAGCGGTT 891 36 100.0 38 .................................... ACCATCCGTGATACCTCCTCCAATAATTTCATTAGTGC 817 36 100.0 36 .................................... GCATATACTTCTGAAGTGTTGGTTTGTGGGAAAGAT 745 36 100.0 32 .................................... TCGTATTGCGCTTGATTGGCAGCTTGAACAAG 677 36 100.0 35 .................................... TTTACCGTGGCGTATGGGCTTTTCGCTTTAACTTC 606 36 100.0 37 .................................... TTTGTATCAGGTGAACTCATGCTTCCGCTTTTATCGA 533 36 100.0 35 .................................... CTGTCCGTAAACCTCAACTGGCACATATTCGACAT 462 36 97.2 38 ..........................G......... GTTTGTAAATTACCCTTAGCACTATTTTGTTCCCATCC 388 36 97.2 36 ..........................G......... TTTTTACGGAACTATCTTGTAGTAGAATTGCGTATT 316 36 97.2 36 ..........................G......... CTTGCGGGGATGGGGCCGTACCAGTCACGCCGAGCG 244 36 97.2 0 ..........................G......... | ========== ====== ====== ====== ==================================== ====================================== ================== 12 36 99.1 36 CTTTACCGATTGCTTTAAATCGGAATTAATGGAAAC # Left flank : TGGGGGCGAACAACCGTTATTGGTGTCAACTTAACGTAAAACCCTTGTAATGACGTTAGAGCAAACTTACTCAATTACTAACTAATCGACAGTCACCCCACCCCGGTTTTGTCTAAAGCCAAAACCTCCCCTCCCCGCCTGCGGGGAGGGGATTGAGGGGTGGGGTAAAATGGCTGTGGGACAAGCGTTTAAGCTTAAGTTGACACCAATGAACAACCGTTCGCCCCTACAACGTGGTTTATTTACCTGAAAATTGCTGTAAAATCATGTGTTGCGATGTGTTGACAATGCACCCTACTAAGGAAGTTTGAAATGTTCATCGACACCACTCGCCGAATGCCCGAAACCCTATATTTTTCGTTAACTGGTGTCGATGCTTTGCAGGGCAAGGATTTGAGCTATGTATTTTACTTAATTTTCCACCAGGTATATAATCTTTTTCAGAGTGGTGTCGATTTAGCGGCTAAAACCCTGACTGGGCAAAGCCTCCTGAACGAACT # Right flank : CTTTTCTTGTAAGATTGATTTCAATACTGCTCGGTTAAGGAGAAATAGAGGTAAAACAAAGAAAATTTTGTTCGCAAATGTTTTACGCGAACAAGATGATTGGACTTACTTTTTCTCTTTGAGGCTATCGTACAAGTCCACCCAATTTTGACGAAGAGAGTCGATGCAGGAAGTTAAGTGATCGATTTGAGTTCTTCTAGCCACAGAGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTTTAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATTGCTTTAAATCGGAATGAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 9924-11200 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAGY01000135.1 Nostoc linckia z2 scaffold156.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 9924 36 100.0 37 .................................... CTAATGAAGTTTGGTAAAGAAAGGGTTTCAACTAATT 9997 36 100.0 32 .................................... TTAAAGATTTTTAGTTCAACAATTATGCCAAA 10065 36 100.0 36 .................................... TTTATTGCGTTCCGGATTACCAATATTTTGGATGGA 10137 36 100.0 37 .................................... AGACTGAGTTGTGGTTGCCACAATCACCAGTAGGAAG 10210 36 100.0 37 .................................... ATATTCTTGTAATTGATTTTCAAGGATTAATGCACTA 10283 36 100.0 37 .................................... ATTAAGCCAAATGTTGCCTTAAGGTTTTCTTCAACCC 10356 36 100.0 39 .................................... TTCTTGATTCCCCCAGTAGAGAAGCGAGATTTCGTCCGG 10431 36 100.0 35 .................................... CTTGCTGGTTCCAAATCTGCGAGATTTGCCTTTAT 10502 36 100.0 37 .................................... ACGAGCAGTCCTGCGGTTGAACAGCATACAGCGTGTG 10575 36 100.0 36 .................................... GATTGATGTAAACATAAACATTAAACTCTTGAACAA 10647 36 100.0 40 .................................... AGCATTGAATGGTTGGTCGGGTTCCCATGAACCGCAACCG 10723 36 100.0 41 .................................... TTGCAGTAGTAGCAACTGCGCTGTTGGCGACTGCATTTAGC 10800 36 100.0 36 .................................... AATGTTATAAGCAATCCTCCAACATCACCTTGTATG 10872 36 97.2 37 ..........C......................... ATTATGGTTGCTTCAAAATCGTTTTCGCAGTCTCTGT 10945 36 97.2 37 ..........C......................... TCGCCTTTCATGAGAAAATGCAGAACGCGGTTTTTTA 11018 36 97.2 37 ..........C......................... TCGCCTTTCATGAGAAAATGCAGAATGCGGTTTTTTA 11091 36 97.2 38 ..........C......................... TCAAATTCTTCACTGGTAACTTGACACTCACCCATTGC 11165 36 83.3 0 T.........C..TAA...................T | ========== ====== ====== ====== ==================================== ========================================= ================== 18 36 98.5 37 CTTTACCGATTGCCCTAAATCGGAATTAATGGAAAC # Left flank : GACACCCATCCCACAATAAACAATGTTTTTAAGTAGATGGACATAAATAAATATAATATGTTCTGTCATTGCGTTCGCGTAGCGTCTCGTAGAGAGCGAAGCGAAGCAATCCCAGAGACTTTGCGATTGCTTCGCTTCGCTCGCAATGACATCTTAGATTTAATCATGACTATCTACTTAGTTGCGCCTTAGCACCTTCCAAACAATAAAGCTAATGCACAACTTTAGTCTAGACACGCCACTACCTTTTCTAATGAGGAAGATTTATCTCACGCAAAGGCGCATAGTCGCACAGAAGATGAGGAGTTTTAGATGTTCATCGACACCAGTCGGGAAATTGCCAAAACACTATATTTTTCGTTGAGTGGTGTCGATTCCTTGCTGCGTAACGATTTGAGGTATGTGTGTTGTTGAATTTCACACAACATATATAATGTTTTTTAGAGTGGTGTCGATTTGGCGGCTGAAAGCCTTACGGGGCAAAGGCTCCTGAACGAACT # Right flank : TCTATCGAAAAGCCAGATCCCCGACTTCTAAGTCTGGGATCTTTTTTTTCACGAAGGATTTAATTGCTTATTGCATTAAAATCTGACGGATTAAAATACTCATCATCTCGCCAGAATTACCCATTGGTACTAATGGACTTTACTCGCCAACGTTAGCCCAGCCAATGACTTACAAATAATGAATTGTGCTGGTAAGTAGGTCAACTTAATTAAACATAAAACAATGGTAGGGTGCGTTATCGCAAAGCGTAACGCACCTCAATTGCTATAGTACAGTCTACAGAGGTGCGTTAGCCTACGGCATAAGACACCCTACATTTATTGACATCTACGTATGACGTTTTTTTAGGTTGAGCTACTTAACGGCTTTTACATAACCTATCAATGTATTGCCTAAACTAACGTAATTTTTCGTTAGCTAACCATTTAAACTACTTATCCTAACGTTGCAAAAAAGCAATAAACTGTTACAACATCAAACGATGTAGAATTTTTGTTGA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCCCTAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATCGCCCTAAATCGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 8770-9243 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAGY01000021.1 Nostoc linckia z2 scaffold21.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 8770 35 100.0 38 ................................... ACGATCTGTTCCAGATGTTCCCCAAACATTTACAGATG 8843 35 100.0 39 ................................... GACTGAGAAAAAAGGAAAAAACTAAGCCATAAGCTACCT 8917 35 100.0 39 ................................... TAGAGCGTTCCTTCTCTGACAAAAGTCGAAGCAGTCCAG 8991 35 100.0 37 ................................... TTAACTGAAACTCGTTGAAAGTTTCATGGGTTAGGGT 9063 35 100.0 37 ................................... AGTTCAAAATCCAGGTACGGCTGAAAGACATACTGAT 9135 35 100.0 39 ................................... CCTTGAATTCTCTTTACTAATTGAGATGATAATGGCAGA 9209 35 97.1 0 ..................................T | ========== ====== ====== ====== =================================== ======================================= ================== 7 35 99.6 38 CTTTTAGCTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : GAGTTTGTAGTAAGCACTTCAGTGCTTAAAAATCAAGGACTAAAGTCCTAACTACAAACTTATTTTACCCCTTAGAACTAATGCGATAGACCACTAGGAAACGCTATAAGAAAGCCTATCCCAATAAAAAAGTTGAAGGTTTATTCAACGGCAAGCCACTCTAATCAATAGAATTAGCCCTCGCAAAACTGCTAGGGCTGTTTGAATGTTGTGAAAAATTGCCAAGCCAAAGAAAGTAGTGATTTTTAAGATGGATGTATCATCCTTTGACTCGGAAAAAATAGTTCGGATAATGTAAAGAAATGTAAATTTGCGGGGGGTAAGCAATGGCTGAAACCCTTATTCTATCGTTGACCCCCGCAAATGCTCTCTGGGTAAGGGTTTGAGGGTTTTTATCTGGCGTTTATTGCTAGTAATTCCTATTTATTGGAGCAATATCTTGACCCCCGCAAAAATGAGGGTGTACAATCCAGTGATGGTAAGCCTTCTAGAAGGCTACC # Right flank : TGTAAAAATATTTCTAAAACAAGATACCCAACTTTTTTTAAGTCGGGTATCTTTTTTCAGGAATATAGGACAACACCTTTATTTAAGGTTTATTGGTAAAAAACTGGTTTTTTAGACGCGATTCATCACGTCTTTACATGAATAATTTTATGCTTAACTGAATTGTATTAGTATATAGGACTTATGCATTAAGCAGATATCATATTATTTTGCAATACAACAGGGTACGATCGCATCTGTACCAGACTGAGCTAAATCGCCTTGTTTGAGTAGCTCGATCCAAGCCGATATAATTTTTGGATCTTTGTCTTTGGTATTTTGTAAATTTTCTCCTAAAGTTGTTAAAGCATCATACCAAAGACCATGTTTTGCAAAAAAACTAGCTTTTTCCAATGGGGTTTTAGCGGCTGCAAGTTGTTGTGATGATGCATTGAGAGTCACTTGTGTGATTGAACCTTGGACGTAAACAGCAGCAGATGGTTTGTCAGGATCGCAATAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAGCTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 42415-43418 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAGY01000027.1 Nostoc linckia z2 scaffold27.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 42415 37 100.0 35 ..................................... GAAATATCCACCCCAACCTACAACATGATGCCAGT 42487 37 100.0 36 ..................................... TATCTAACAGATCTTTATCTTCTATATTAATTTCAA 42560 37 100.0 37 ..................................... TTTTAACATTAAATACTCTTCTCTCTCTTTCGGAGGG 42634 37 100.0 39 ..................................... GGCATCAATAAGGGAATTATTACTATATACATAAAGGAA 42710 37 100.0 34 ..................................... TGATTGCTTTCACGTTGCTGGCATAGTTAGCAAC 42781 37 100.0 36 ..................................... CCTGATTTGGCAGGTGTCCAATCTAAGGATGACCAA 42854 37 100.0 35 ..................................... ATTGCTCAGGGGTAAATCGGAGTCGGCGCGGTATT 42926 37 100.0 36 ..................................... GTCTTTAGCCCCAGATGTTGCTCCATCCAAATAAGA 42999 37 100.0 47 ..................................... TTGATTTGGGTGATGCGATCGTTTAGCCCATCTTTGATGTAGTCAGC 43083 37 100.0 34 ..................................... TCTTAAAGTAGAAATTGAACTTACCGATAAGTTC 43154 37 97.3 37 ......................T.............. GAATTGATTTTGTGCTGGAGTTCTGGCTCTTGGAGCA 43228 37 100.0 37 ..................................... TAAAGTTTCACCATTTACTCTGTACAGATGGGGTGAA 43302 37 100.0 43 ..................................... TTTTCCAAAGATACACATGCAAAAATGTGCATATCAGTCACAG 43382 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 14 37 99.8 37 GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Left flank : AGAGTGAACACAGCCCAAATCCAATTAATACCCCACGCATGGATTTGTAAACCGGCGGATACCAGCAAAAAAATGATAATAAAAGCGATGGGCATTGCCAACACAACCCATTGCCACAGCTTTAATCGCACCATTACCCTACACCTTTTAAATCACCTTGTAAAAAGTTTATCGTTTTCAATTTGGGTAGGATAATCGTTCTATGGGTTGAGTAATGAGTTATGACTGTTGACTGGGGGTTTTAGCAATGATTTGCGCGGAGCTTGGCTGTTTTTTTAGACAGTAGAATATTTTAGGCTGAAATCTTTACTGTGATTGTATTTGAGCGATTTTTGCTAAAAATAGATCCGCGCAAGCTTTGAAAACGTTGTGTTACAAGGTTTTCAAGGATTTTTGTTTAACCAAAATCTTGACAAGCGATCGCTCAAACGTTAATTTTGAATAGACCCGCGCAAACAGACCTTACAACCCTGTTTTTGCAAGCCTCCCAGAGTCTTGCT # Right flank : CATACGTTCAGAAATTATAAACCCGCTTAAGCGGGTTTGTTTGTTTAGATACTATCTATAATTCAATACGATTCAGTTAAGCATTTCTTCCTTCTCTTTGCGTCCTTTGCGTCCTTTGCGGTTCGTTAAAAAAATTGACATTGACAAAGACTTTTAGCCTTAACTAAACCGTATTAGTCTATAATCCAATACACTTCAGATAACACCAAAACACTTGTAGACAGCGATTTATCGCGTCTGATAGTCCTCTGCCTTTCTTGATAAATAGAAGAACTAAATTAAACCTAACTCGATATCGCCGGGTTTCCACACTTCGACAGGCTCCCTTCGACAAGCTCACGGCGGCGCAGTGCATCGCTGCACTCAACCCTCTTGGAATAAGCTTAACGAGCATTGAGCAAAGTCGAAATGCGTCTTCTAAATAATTGTGTCCACCTACTTCAACTAAACCTTATTTAAAATTCTGAATTCTGACTCCTGACTCCTGACTCCTGACTCCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 67093-67785 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAGY01000026.1 Nostoc linckia z2 scaffold26.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 67093 36 97.2 38 ...............C.................... CTTTTGGTTGCTGCACTGTTTCCACAGTTATGTCTCTG 67167 36 97.2 37 ...............C.................... CCCTAGGCCGCAAGCGCCTAGTAATACCCTCAACCCG 67240 36 97.2 37 ...............C.................... ATTAGAGCTGAGTAGACCGCGTCAATATGACCGGCCA 67313 36 97.2 42 ...............C.................... TCAAGCATATCAAAATCTGAAACTAAGACTACTTTATGACGA 67391 36 100.0 34 .................................... AATTTTGCTACGAATTGACCGCATGTAAAATCTG 67461 36 100.0 35 .................................... GTTTTCTACTCCACTGGTCTCTTTTGTGTCCTTCC 67532 36 97.2 39 .............T...................... AATCAAGAACAAACTTTCCTTCCGCATTTTTCCCTAGAA 67607 36 100.0 34 .................................... TGAACTTCCTTCAAAGTCGGGTTTTCAACCAATA 67677 36 100.0 37 .................................... TTGTCACTGTTGACGACAGCGCTCAACCAGTTAGGCC 67750 36 97.2 0 .......A............................ | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 98.3 37 CTTTACCGATTCCCTGAAATCGGAATTAATGGAAAC # Left flank : AATTATAAGTAATATTCACATTTGATTTACTTTGTTGGTACACAGGCTTAATTTCTTCCAGCGCATCTTTTAAGCTAGCAGCGGCTGACACAAGTATGTTGTTTGACTGGGCGACTACACGAGAAGGAGTAACTAGTGGTAAAATAATTGCTAGCAATAAACCAGCAATTGCTATACCCAAAAAGCCAAGAATTTGTCTTCTTTTCATGGAAAAAGCACTTTAGAGGTTTTTTTCATCAAATTGATGCTAGCTAGAATACTACCAAAAATACCAAAATTTACCCAACTATATCGGTAAAATTTTTGTATCAGATGTTCATCGACACACCCCGCCAAATCTTCAAAACCCTATATTTCTCGTTGAGGTGTGTCGATACCTTACAGGACAAGGGTTTGAGGTGTGTGTTTGACTTAATTTTTCACAAGATATATAGTCTTTTTCAGAGGTGTGTCGATTTGGCGGCTGAAAGCCTTGCGGGGCAAAGCCTCCTGAACGAACT # Right flank : CTTCTTGCTGTTGAGATGCGGTGCAACATCATAACTTGTAGCCGCCTTAGCAAGGAATCCCCATAAAGCAAGAATCCCACGGCTTTTTGTTAAACTCAGCAAGAGCGATAGTTTAATAGCCGTGGGATTTTCAGTTATGCCTTCTCCATTTCCTGGTATGAATCCCTATTTGGAACATCCTTCTCTGTAGACAGGAATTCATCATACAACAACTCAAGAAAATACGAATTACGAATTACGAATTACAAATTATTAGCCATCTCTAATAACTGTGCTTCGGTTAGCTGGTTAACTCCCAATGAAATGGCTTTTTCTAACTTAGAACCGGCATCTTCTCCTACTACTAAATAATCTGTTTTTTTACTCACAGAATCAGTCACTTTTCCGCCGGCTTTTTGAATCAATGTCTTGGCTTCATCGCGTTTTAGAGTTGGCAATGTACCCGTAATTACGAAAGTTTTTCCAGCAAACTTTTCATTAATATTATTAACTGTTTCTGT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTCCCTGAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATTCCCTCAAATCGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 40925-39499 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAGY01000033.1 Nostoc linckia z2 scaffold33.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 40924 37 100.0 38 ..................................... ACTTCAAAAGTGCTTACGTGGTTTGGGAACCTGAAAGG 40849 37 100.0 36 ..................................... GTTTCTATTTTAACCGTACTTATACGGATTAATGTT 40776 37 100.0 37 ..................................... TTTTTCAAAAATTTTAAAAATTATCACCACCCTGGAA 40702 37 100.0 38 ..................................... ACTCAAGACGCGATGCCAAAAGGTATCAATTTAGATTA 40627 37 100.0 37 ..................................... AATATACGTAGGCTTTCTGAACTCAATGATTTTATGC 40553 37 100.0 40 ..................................... AATTATTCATCTCGCTTCGGTCTTTATTGGATATTTACAA 40476 37 100.0 37 ..................................... GATTCAACGACATTATATAAACGGGCAAATAATTATT 40402 37 100.0 36 ..................................... TTATCAAAACTGCAACCGAAATAAACGCAATCACTA 40329 37 100.0 34 ..................................... TAACATCTAAAGAGGATGTAGTTCCAGGGGCTGT 40258 37 100.0 36 ..................................... CTGCTGGTTCTACCCTTGGTGGGTGGGGTGGTGCAA 40185 37 100.0 34 ..................................... GTAGAACTCCGGGCTATGCAGCTGTACAAGCTGA 40114 37 100.0 35 ..................................... CTGTGCTTACAAATCCATTGCCTGCTGGGGCTTCG 40042 37 100.0 33 ..................................... AACCAAGATGGAGATTCGTAAAAATTGAGGGGA 39972 37 100.0 38 ..................................... AACAAGCAACCCAATTAGCATCCCTGGTCTTCCACTCA 39897 37 100.0 37 ..................................... TTCAAAAATACTTAAAACCCAATGAATCAGAAGCCGC 39823 37 100.0 37 ..................................... GAAACCCTCAATTCACATGCCCCGCACGGTTAGTCGG 39749 35 91.9 34 ............................A..--.... GAGGGACACACAAAAAACAAAAGCAATCAGAAGT 39680 37 70.3 37 A..........GT..T...T..C..AT..T..A...T CAGGAAAAATGAGACTTTGCTCGATAATACTTTTTAC 39606 37 73.0 33 ....A..A.G.AT...T........AA...C...G.. GATGTTTGGAAATTGACAATTTTTTTGGAGAGA 39536 37 70.3 0 ....T..A..TT...TT.AAA.T...T.......... | C [39530] ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 95.3 36 GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Left flank : ATTAGCGATCGCGGCTTACGATTCTCGCAAAATAAACTGATTGACAAAACACCGAACCTTGACAATAGAATGAAAATATTCAATAGCGCCGCAGTTCATACTTGTTACAAGTCTCTGTGCTGCGTAAATGTGGGTTAGTTTGACTGCTGTTAAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTGTCCCTTGTGGATAGGAATTAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACTGAATCACCTCCGACCAAGGAGGAACCCACCTTAATTATTTTTTGGCATGGTAAAGCAGGGGCGATTTCCCTGGCACTCCTGCCAAAACTTTAAATCGCTTGTTTAATAAGGTTTATAGCCTTTAATGTGTCAGTTGATTTACTTTTTTAAGTATTAACTGACCAGCGATTTTGGGAGACATGACAAAAATGCCTTCAGAACTATTGGTAAATCAAGAGTTTGAAGCGCAGA # Right flank : ATTGGTAAAAGTCATGGAATTCTTGGACTAATAGGACAAAAACTTGTCAACTTACAGCAATTTTCATTTCTTTGAACCACAAATCCCCATAGGGGGGTAAGGTCTTGCTGGCAAGGTTGATGTATGACAGTAACACACCACGCTGAAAAGTTTAACGATATTTTTAACGATATTATTTTGTTAATGGTTAGCTAACACAATTGGATTACATAGTGAATGCGGACATTATTTTGGCAATACTGACATTAATTTGTCAACGCGGACAAATAATTTGGCAATCGACAACAGTCAACAGTCACCAACTTTCATCGAACTCACGTTAAGTTAAATTCCGTGACTTTTACCAATTACCCAATTACGTCGGAAAAAACGAGCTAAGGCTGACTCTTCTAGTGATAAATAAATTGGGCGTCCGTGGGGACAGGTGCGGGGGTTGCGAGTGCGTTGCCAATCATCTAAAAGTGTCTGCATTTGTTGTAGATTCAATGGCGTACCGTTCC # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [35-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //