Array 1 48665-50503 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJOK01000004.1 Lactobacillus helveticus strain FAM1213 FAM1213_scf0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 48665 32 100.0 34 ................................ TTCTAGCCTGCTGGTCTAATTTGTACTTTGCAGA 48731 32 100.0 35 ................................ TATGCTATTGCTCGTATATGCATGGTATCTACACG 48798 32 100.0 34 ................................ ATAATGTATAAGCCATAGGCAGGCTAAGTAGCCC 48864 32 100.0 35 ................................ AGTTTTTTCACTTGAGGCTGCTTCAACAGGTACAG 48931 32 100.0 34 ................................ TACTAGTTATCAAGACTAACCGCATCACTTGCGC 48997 32 100.0 34 ................................ TTGAAACTGGTACTATTGATGTTGTTATTAAGAA 49063 32 100.0 34 ................................ ATCTATCATATTGCTTTCAGCCATCTGTAAATAT 49129 32 100.0 34 ................................ TGGTGCATATTGGGTATCATCAGCCATCGCTTTT 49195 32 100.0 35 ................................ AGATAGAATAGGCTATGCACTAAAGTGGTCATGGG 49262 32 100.0 34 ................................ ATTAGTGGGTAGATTATCAGACTTTATTGCCAGA 49328 32 100.0 36 ................................ ATTCAGATCCTTTAGGCATAAGCGATGTACGTGAGG 49396 32 100.0 36 ................................ TTACTTGCATTGGAAGAGCCACCGCTTGTAGCGTTA 49464 32 100.0 34 ................................ TACATATGATATAAATAATCCTAAGCGGATAGAC 49530 32 100.0 34 ................................ TATTGGTCATTACCTTATGTACTTCTTCATCATG 49596 32 100.0 35 ................................ AAAGAACAAAAGGAATCAAACTACCAGAAGCAGAC 49663 32 100.0 34 ................................ AGTTCGTCGTGGCCGTGAATGTCTTTTGTGTTAA 49729 32 100.0 35 ................................ TACTTCTCGATCATTGCAAGTCTTGTAGGCTTTTC 49796 32 100.0 39 ................................ TCACACTTGGAGAAACTTCAATAGCAAGCTTATCCTCTG 49867 32 100.0 39 ................................ TCACTATGGACTCTGGTGATGTTTCCGAATAATCAAGCC 49938 32 100.0 34 ................................ TCACACCACTGGTTTAAGAACTTACTAGCTTGGG 50004 32 100.0 35 ................................ TCTAATTTATGTAGGGGATAAGATTAAGCTTACTG 50071 32 100.0 36 ................................ AGCATATGGAACGACAACCACGATACTTGTTAAGCC 50139 32 100.0 35 ................................ TTGTTGGTATTGACTGGGGTGTCAAACATACTGTA 50206 32 100.0 35 ................................ AAACAGATTGGCTCTGGCTGGAATCACTTCTGGGC 50273 32 100.0 34 ................................ AATTGATGATTTGCGTAAAAACGGACGTGCCGGT 50339 32 100.0 34 ................................ AGCTTGATTTCAGTTGACATCGACCCCATTGGAA 50405 32 100.0 35 ................................ AAAAAAGCTAAAACCGTTTTAATAAATAAAGGAAA 50472 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 100.0 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : TTTTAGGTCCATTGCGCTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //