Array 1 498126-498423 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010835.1 Pyrococcus kukulkanii strain NCB100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 498126 30 100.0 38 .............................. AGGTGATCCCACATCCAATTATATACGTTGATGAACAT 498194 30 100.0 37 .............................. CAAGCCACTTCAGATCCCTGTAGAGCTCACATCTGAG 498261 30 100.0 36 .............................. GTCCTCTATCGCGTCGGGGTCGAGGTAGCCGTTCTC 498327 30 100.0 37 .............................. TGGGCGGTGTTGTAGAGCTGGAGGACTATGTCGAACT 498394 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 100.0 37 GTTCCAATAAGACTAGAAGAGAATTGAAAA # Left flank : ACGCTATAAAGTTCCCAAGTAAAACCGAAAAATCTTAGATACCCTTCCTGCTCTCTTGTTATTTTTATTAACCCTACATGAGCTGTGGAAAAGAGAAAATATTTGTTCTACGCTGATTGGAAGTGTTTAGTAATTCTTCGTTATTAAATGGCAGTAAGTTACACGAATTGGATGATAATGTTACGAAAATTTTTCGATGAAAATTAGAAATGTTTTTAAGAGTAGATTCACGCTAGAATACCGAGAAAAATTGTTAGAACGCAAAGAAAAGCTAATTTTATCTTATTATAAGTAAAACGTCCTTTATAATGGCGTAGCTTCTAGAATTAAGCGAAAATAAAAGTGGACAAGAAAACGTCTTACAAGCCTTTTTGCAACTCTCATGAGATATTTAACTTTCTAGGATAGACAAGAGAAGTAAGAGGGCCCCTTGTCGAAAAACTTATAATATTGGAGCCTTTCTAAGAAGGTATTGGGGAATTGCACTAAAGATCGGGTCT # Right flank : AGTTGAAGAAAGAGATACTGTTCTTAGCATTGAAGCAAATTTTGAATAAGTTCAAATCCTAGCCAGCTTTGCTATAAAGAAGCTGTTGCAGTCGTGCTTGTGAGTCCACGCTCTAAACACATTGTCCCCAATATCTAAAAACCCTTTATCGCCCCAGGAATATTCGTATTCCACCAATTCAAATCCCTTACCTAACGCAAATATCACGTTCTCCTCGTTCTCATCAACCCTAACTGAGCACGTGGAGTACGTCATTTCTCCCCCGTCCCTCAAGTTCCTGTAGGCGTTGAGGAGCATGTTCCTCTGGACGCTTATTACCCTCTTTATCTTCCCCTCATCAAACCTCCACTTAACTTCCGGGAACTGCCTGTAGGTTCCCGAAGAGGAGCAAGGAGCATCGAGTATCACCTTGTCAAATCTCTCTCTGTCGATGAAGCTTTGGCCATCTGCATGGACTAGCTTAACGTTCTTCACCCCCAACCTCTTCATCCTCTCCTTCA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAGAAGAGAATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 2 714551-714045 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010835.1 Pyrococcus kukulkanii strain NCB100 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 714550 30 100.0 37 .............................. GATGCAAAGGCTTCATATTCAATAATCATTTGAACTG 714483 30 100.0 36 .............................. CGCGGATGTAGAAGCGGTAGTCAAAGTCGAACGCCT 714417 30 100.0 37 .............................. TCAGGCTCGGGAAGGAGGCGAGGGACTTAAGCAAGGC 714350 30 100.0 37 .............................. ATTATACGTCGTTGAACGAGCAATTCTAAACAGAACA 714283 30 100.0 38 .............................. AGCCCTGACGAGGCTTTTGAGATTAGTACCTCAAGGGA 714215 30 100.0 40 .............................. TACAGCGACAAGTCGCACAGGGATGTTAGGCGCGTTTATA 714145 30 96.7 41 .............................G ACATTGATGTTGTTCACGTTTTTAGTTGCCTGGACGCTGTG 714074 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ========================================= ================== 8 30 99.2 38 GTTCCAATAAGACTAAAAGAGAATTGAAAC # Left flank : GCCTAGAAATTTATATCTTTCGAAAAATCTTAAATACTACCTCTCAGGCCCTATTTTCCTTGAAAAAATCTAAATATTGCTTATTTAATTGAATAATTGGTTGTAAAAGAATTGGAAAGTTTCAGTAACTTTTTGTTAGTATGTAACATTTCATCATATTTTCGGCACATTTTGTAACTAAATTTTTTCGGAGCTTAAAGTGGAGCTAGAAGGGATGCTCTTTTATCTCAAACCCTGTTGAAACCATGTCTTTTCTCAATTATTCGCCCATATTCTGCTTGTTTCTAAACTACTGATTTGACAGGCCGTTGAAAATTTAATGATCATTTTTGAGCACTTAAATTTTAGAGTTCTCAGAAATTCTTTCGTTTAGGGCTCTGAATTCTTACAACTGCTCTTTAAGGCCTTTTAAGGCTCCGGTAAGCACCCTTTGCCAAAAGACTTATAAAATCCAAGCCTTCTAAGAATAGTATAGGGGGAAACGAGTAAAAACTTGCGCT # Right flank : AAGTCATTACAATAACAAAAACTAGAATATTGCCCCCGGTAAGAGCTAAAATAAAAATCCAAAAAAGAACAGACAGGAGATCACATGAACTCCTCAAGCCCAAGCTCCTTAAGCTTCTCCTCTGGAATTCTTCCGTCTTCTGTCCATCCTCTGAACTTGTAGTACCTTGGTAGCATCTCCTTGAGCCTGACCACGTGTCCCTTATGCGGCCCTTCTGGCATTGGCTCTTCAAGGAGCCTCTTAGGCAATGTATCCTCTTTGAGCGGGTCAAGGCCAGCTTTGAGGTTGAACAGCCTCTCAGCATTCCATATCCTCTCTCCTATCTTGAGGTACTCCTCAGTTGAGAAGTCCCAGCCTAGCGCTGCATTTAGGAGATCCCTGTAGTCATCCGCACCTAATCCAAACGTGGTGAACAGACATAGGCCTGCGGCGTCAATTAACGCCGTAAGATCTTGGAACAGGATGACCATCTTAACCTTCTCGTCGCTTATGTCGTGCGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 3 1225900-1224206 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010835.1 Pyrococcus kukulkanii strain NCB100 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 1225899 29 93.1 37 AG........................... ACTATGCAAACGCAAAAGTACATTCTGATGTATCAAT 1225833 29 100.0 46 ............................. TGTATATCGCAATTGACGTATTGCCACCTGCTTGATATCTCACGTT 1225758 29 100.0 33 ............................. ATGAGATCCTGGGGCACTACCTTAACTGAATAA 1225696 29 100.0 61 ............................. CCTCTTCTCCACGGGCTTCCTCCACCTGCTCCTGGGCCTGCCCTTCCTCCTCGAAGTACTC 1225606 29 100.0 37 ............................. CCCATGCGGTGACTGTAATTGAAGTGTTGTGTTGCGT 1225540 29 100.0 36 ............................. CATTCACATGCTCTTCTATTTCTTCTAGAAACTTCT 1225475 29 100.0 37 ............................. TGCTTGGCGTGAGCACCTGTATGCTGTCGTTGCTCAC 1225409 29 100.0 37 ............................. TCCACTGTGAAGACCGTTCTCGCAACAGCATCTATAT 1225343 29 100.0 37 ............................. ACGTGCTTAATCTTCCCTTCGCCGTCCATTTTGATAA 1225277 29 100.0 36 ............................. TTGCTTTTGTGGGTGTTATTTCAATCGTTTTTGCCA 1225212 29 100.0 38 ............................. AGCATAGCCGAGAACCCAGGCCTCTTGAGAGGATCCAC 1225145 29 100.0 39 ............................. TAGAGAACGACGGTTCTATCGGGAGGACAATAACAAGTG 1225077 29 100.0 37 ............................. ATTTTCACGACGGCCCACCACTTGTCTAGGTATCTAA 1225011 29 100.0 45 ............................. TAGAACCTGCAGAGCTTCTTGAGGATTTTCATCGCCTTCTTGTCA 1224937 29 100.0 36 ............................. CCGACTGGGGAGGAGAGAATAATGTGTATCCTGTAG 1224872 29 100.0 37 ............................. AGCATGCACAAGGGGTTTGCTGTTTCGTCGATTTCAA 1224806 29 100.0 39 ............................. TAGCAATTCTGGCTGCCTCTTCAGCATTCCTTGCAATAA 1224738 29 100.0 53 ............................. AGCACCTGCTGGAGTTGTGCGAGCTTTTCCTTCTCTGCCTGCTCTCTCATCCC 1224656 29 100.0 36 ............................. GAATCTTCCTTAGGAACTCGACCACGTCGTTCTCGC 1224591 29 100.0 39 ............................. AGGTTGTAGGCATGATAGGGGCAGGGTGATCGCCATGAC 1224523 29 100.0 45 ............................. TGACTAGACACGAGTGCGGTTACGAGACGATGGCGTCTTTCCACA 1224449 29 96.6 40 ............................T CTCAATCCCTTGACCAGCTTGCTGTTGTAGTTCTCTTTTT 1224380 29 96.6 53 ..............G.............. TAAATCACTGCAGATATTCTCACAAAATCCTTATCGTTTCTTTTACTCCTCAG 1224298 29 96.6 36 ..............G.............. GCCCAACCACTACCAGGGCAGCCCCAACAGCCCCCA 1224233 28 79.3 0 ..............T.G.....-..CTG. | ========== ====== ====== ====== ============================= ============================================================= ================== 25 29 98.5 40 GTTTCCGTAGAACTAAATAGTGTGGAAAG # Left flank : TTTTTCATTTGTGTGTTTTGAGCTTACTAAGCTTGTTTTGTCCTGCTGAAGACCTGCTCGGGTCTAGATTTCCCAATTACTGATTTAATTTTCAAGTATTCTTGATTTAATGTTATATTATAAACTTTTGCTTTTGGATTATCTCATTAGTGGTAATTTGTTGGATGTTTTATCTAATTGGGAGGTTATAACTTCTCTTAGCCCCATTTTTGATTTAAAGTCCTAAAAACCTTAAATTGGATAGTCTAGGAGTTCTAATTAACTCGCGTTTTTGGATTAATTTAACGCCTCGAACTTTCTTCTGGTTTACTTAGTTTCGATCGTTTGAAAGTTGATTTTGACAGTTTAAAACTCTGGGTTAGTGAATTATTGTTACCTCTTAGCTCCGTTATTTTCAGGGTAAGTTTATAAAGGAAGGGTAGTGCTACAGGTTTCCCAGGAAAGTAAATTATTTAAGCCCCTAGAAGAGAGTATTAAACGAACAAAACCAAAAACCCCAA # Right flank : AGGTTATGAAAAGCCCGATATATATTACCCAGCCCGGGATATTGGAAAGAAAGGCAAATACAGTCTTCTTCGTGAACGAAAATGGAAAGAAAGCTTTACCAATACAGAACATAAGTGAAATACATTGCTTTGCCCCAACAACCCTGACCAGCGGGGTGATAAAGCTACTCGCAGACAATGACGTTCCCGTGCACTTTTACAACAAGTACGGGTACTACCGAGGTTCCTTTATGCCCGCAGAAGGTCAGATTAGCGGGGCTATAGTTATAGCCCAAGCTTCTCACTATTTAGACAGGAAGAAGAGAGCCTATATAGCTAGGGAGTTCCTGAACGGAATAAAGGCTTCGATGATAAGGTTACTCAAATCCCAGAGCGTGGATCCTATGGACATAGAGGAAATCGAGGTAAAAGGAGAGAGCCCCCAGGAGCTTATGGGTATTGAAAGCCAGCTGTGGAAGGCATTCTACGAGAACTTTGCTGGGATGCTAAAGTACTTCTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACTAAATAGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 1251396-1253653 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010835.1 Pyrococcus kukulkanii strain NCB100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1251396 30 100.0 36 .............................. ACAAGAACATAGAAGCTGTAGCGCGGTTTGGCCAAG 1251462 30 100.0 36 .............................. CCCGTGCTCAGGGCCCTGGGCGTGGAGGACGTGAAG 1251528 30 100.0 37 .............................. CATCGACGATTCTGAGGACTAACGCTATCGTTACCGC 1251595 30 100.0 37 .............................. ATCATGGCTAAAGTTGCCTTTTAGCTCGGGGATTAGT 1251662 30 100.0 38 .............................. AGGGCATTATTGGTACCGCACCGACAAGATCCAGTTCA 1251730 30 100.0 36 .............................. GTGTTGGTTCTGACAAGTCCAGTTGAGTCAAAACGC 1251796 30 100.0 37 .............................. GTGGGTTCCTGACCACATCCTCTGGGTCAAAACCCCA 1251863 30 100.0 37 .............................. TTAGTCGTGTCCACCGAGTCGGGAGCGTAGAAGAGGA 1251930 30 100.0 38 .............................. ACGCTCAACGTGTTCTGCTTCACCCTGATACTTTGCAA 1251998 30 100.0 39 .............................. ACACCTTCTTCATCTCGGCATCGCTCATTCTCCTCGCGA 1252067 30 100.0 37 .............................. AGACTCTTTCCAGCCAGTTGTGAATCCCTTCTCGAAG 1252134 30 100.0 37 .............................. GGATTTCCCCGACCCGGGGTCCCCTGTCAGGGTAATT 1252201 30 100.0 38 .............................. TCTTCAGCTCCAACGGAGTTATAGGCTCTGAATCGTAG 1252269 30 100.0 44 .............................. ATGGATAGATTGCCCAAATGGGTGTAATAGTGTTGTAAGAACGA 1252343 30 100.0 38 .............................. GGTGCAGCACTACTTCAAGAAGATGTTTCCCGCTCCTG 1252411 30 100.0 38 .............................. TTATCATGCATCTCAAAGCAAATCCAGAAATGTGGAGA 1252479 30 100.0 36 .............................. TCTTGTTCTAGCTCTCTTAGCACTTCATAGAGCTTC 1252545 30 100.0 36 .............................. GTGGTTTTACTGGCAAATAGTGGTTCCTTGGCCACT 1252611 30 100.0 36 .............................. ACCAGACTGCGGGATTTAGGACGGCAACAATACCAG 1252677 30 100.0 37 .............................. TCATATAAGGGTTGGGTGTTGAGGATGTCAAGGATGT 1252744 30 100.0 39 .............................. CGTCGCGGGGTCAGAAAGGGCTTTTAGCGAGGGCTTGCG 1252813 30 100.0 37 .............................. ACCTATCAAGAACACGCCTCATCTCCTCCGCCTCCCC 1252880 30 100.0 38 .............................. TCACGAGCTTTCTATCTCCCTGCGTCGTAATGTCTCGT 1252948 30 100.0 36 .............................. AGAGGCTCTTCCTGCAAGTGGTCCTTCCCTCAGTAT 1253014 30 100.0 37 .............................. ACGTATCCCCACACCTCGCCGGCAATCGCTTCTATAG 1253081 30 100.0 37 .............................. TGTCAAAAATCACCTGGCCCTCCGTCACGGCTTCCTC 1253148 30 100.0 36 .............................. AGGGTTCGTAGTGGCCGAACTGTGCCATTCTGTCGA 1253214 30 100.0 39 .............................. TATATGGACAAAACGGTCTTAACAGAAAACAATATAAGG 1253283 30 100.0 38 .............................. GAGGGCAAGGAGTACACCATAGAGTCCCGCAACCTCAC 1253351 30 100.0 37 .............................. CTCTTGTCATACCAGATGCCGTTTGCTGGGTCAATTG 1253418 30 100.0 44 .............................. AGAATCTTCTTCGCCTGCATTTCCTCCAGGACTTTGTTGGTGGC 1253492 30 100.0 36 .............................. CAAGAAAAACTACGATACCATAACGGACGATGAGTT 1253558 30 100.0 37 .............................. ATAACTGCACATGATACAAAACCTATAACAAAGCCAG 1253625 29 90.0 0 .........................-..GT | ========== ====== ====== ====== ============================== ============================================ ================== 34 30 99.7 38 GTTCCAATAAGACTAAAAGAGAATTGAAAG # Left flank : CGGCCACCGCACCATTCTTCTAAAAATTTTAGAAACTCTTCCTAGAGTAGCTGTTTTTCTTAGATTCCCTGATCCTTCCTCAGATTTGTTAATCCTCTACTCTTTGGTCTTTGGAGGGTTTTAGTAATATGTTGTGAAAATATCACTAAATGTTCAAATTTTGGTCATATTATGTAACGAATTTTCTTCAAATTTACCTGTTAAATCAGTAGATATCTTGGTTATATACTGACGCACGATGTATTCTGAGTTTTTGGCATAATGAAATGTGAAATGGAGGCAGCATATAAGAGAGGGCCTCAGAACCTTTTGGAGTTTGTGGGGGTTGTCCAACTGTTGGATATTTTGGGGCTGTATCTCCTTTATACATTGAATTACAAGGTTTGTAGCCCGAGCTTAGATTTGCCTTATTGAGTAGGATAAATACCCTTCATCGAAAGGCTTATAATATTGGAGCTTTCTTAGGGAATATTGGGAGAATTGCACGAAAAATTGTGCCT # Right flank : TAGGGATTAAATCCTACCATACTTCCTCATTATCTCTATAAGCTTGTCCTTTGGGAGTTCATACCTCACGTGGTTGTCCCTCCCATCCATCGTCCTCGCGTTCAGCAAGGAATTGACTATGGCCTCCTCTACGGCTTCTGCCGTTGCCTTAAACAGGGGCGAAAGAACTGAATCAGGTAGCGCTTTAACCTCTAGGGTCTCCTTTCCGTAGTGCTTGATCTTGTTTGCAGTCGAGAAAGCAACAGCTATGTCTCCACTCCCGTTGTACGCATAACCTCCAGTTCTCGCCAATCCTACTGTTGCCCTCTTGGCCAGTCTGTTCAGTTGTCTTGAGGTTAAGGGTGCATCAGTAGCTACAACCATTATTATACTTCCTTTCCCTTCTCCTCCCTTCCCTGGCCAGTCCTTTAACTCAATACCTACGGGCACTCCCGCTATCGTTAAATCCTCCCTTCTTCCAAAGTTGCTGAGGACTAATGCTCCAACCGTGTACCTCCTTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 5 1570550-1572302 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010835.1 Pyrococcus kukulkanii strain NCB100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 1570550 29 100.0 42 ............................. GAGAACGGGAGAGGTTCCTAAGCCCTTGAGAAAGTATCCTGC 1570621 29 100.0 38 ............................. AACACAGCAGTAGCACTAACCCCAGGAACAAACACCAA 1570688 29 100.0 41 ............................. TGAGTATTATCTTGCTGGAAAGAACATTGAGGGCTATCAGG 1570758 29 100.0 36 ............................. ATTGGGATGGTAGTGATGTTGCTCTTGGATCCTTTG 1570823 29 100.0 39 ............................. ATTATCAACACTTTGCCACTAGCTCTTAGCACAAAGCCT 1570891 29 100.0 37 ............................. GGTTTCAATTGTCTCCATAACCTCCTCCTCAGCTCTC 1570957 29 100.0 34 ............................. TAATATTGAACACGCTTGTTCTCAAGCCATAAGT 1571020 29 100.0 38 ............................. AAAAAGACCGATATACCAGAAAATACCAATAAGAATTC 1571087 29 100.0 41 ............................. TGGAAACAATTCTACCCACATTCAATTCTTCCGCCTAAACT 1571157 29 100.0 48 ............................. TAGTCATAGACGAAGGCGGGACAATACTGTTCTCAAGACAGTGGAGAT 1571234 29 100.0 36 ............................. TGTATGCTATTTTGATCTCCTCGTTGTCAATGGCCC 1571299 29 100.0 41 ............................. AGTCGAGCCCGAGAGTGTGGAAGAGGCAAAGCTCTTTAGCA 1571369 29 100.0 37 ............................. CGTTATTATCCTCCTTAGTCCGCTTGAGAATTCGTAA 1571435 29 100.0 36 ............................. ATTGTTGGCGGTTTTTGGTGGACACTATTTTGGCGT 1571500 29 100.0 40 ............................. TACGCTTTCGGCTCAAGTATCAACCTTTCTACTTTCTCTC 1571569 29 100.0 37 ............................. GAAATCGCTTGACGCTTTTGTTGCAACTCTCCATAGT 1571635 29 100.0 43 ............................. CTTTCCGGGAATTCGCCTACCATTTTTTCTTCCAGTGCACTCC 1571707 29 100.0 46 ............................. ACGGAAACAAGTGGGTAAGCCGAATAACTATGAGGGTGTTAAGGGA 1571782 29 100.0 43 ............................. TTTTCACTAATCCTCCATGAGCTTCTCAAAAAGCAACTTTCCG 1571854 29 100.0 45 ............................. GTAAACAGCATGCCAATTACGTCCCCTTCCTCCAAATCGTTCCTG 1571928 29 96.6 41 ............................C CCGAAAGCTCTTCGGCTAAACTCCTAAGAACCTCATCATCT 1571998 29 93.1 37 ..............A.............C CTCCAAAGCTCAAAACCCATTTCTTCTAACTTTCTTA 1572064 29 89.7 44 ..............A......A......C GAGAAGATGCCAAGTACCTCGACCTGAAGGACGTGAAGCTGTCT 1572137 29 93.1 42 ..............A.............C TGAGACCTCACCACTGGATGTAGGGGTTAAAAAAGGTTTCCG 1572208 29 96.6 37 ............................C CCCTTCCTACCCTTTATTGCTAGAAGGACCTTCATCT 1572274 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================ ================== 26 29 98.8 40 GTTTCCGTAGAACTGAATAGTGTGGAAAG # Left flank : TTTTTCATTTGTGTGTTCTTGTTTTATTGGCATTGTTTTGTCCTGCTGAAGACCTGCTCGGGTCTAGATTTCCCAATTACTGATTTAATTTCAAGTATTCTTGATTTAATGTTATATTATAAACTTTTGCTTTCGGAGTATCTCATTAGTGGTAATTTGCTGGATGTTTTATCTAATTGGGAGGTTATAACTTCTCTTAGCCCCATTTTTGATTTAAAGTCCTAAAAACCTTAAATTGGATAGTCTAGGAGTTCTGGTTAACTTGCGTTTTTGGATTAATCTAGTGTCTCAAACTTTTCCTAGATTTATTTAATTTCGATCGTTTGAAAGTTAATTTTGACAGTTTAAAACTCTGGGTTAGTGAATTATTGTTACCTCTTAGCTCCGTTATTTTCAGGGTAAGTTTATAAAGGAAGGGTAGTGCTACAGGTTTCCCAGGAAAGTAAATTATTTAAGCCCCTAGAAGAGAGTATTAAACGAACAAAACCAAAAACCCCAAA # Right flank : GCTGGAAGTGGGGCGGAGTGTAGCCGGGCTTGAGCGGTTTCCGTAGGTTTCCGTAGAACTAACAGGACAGATTTACTCCTAGGTGGCCTCGGTATAAGTTTAAATAAAGAGCGAGATTGAACAATATCTGGACATGATGAGGATGAACCCGCTGAGCTGATGATGAGGGCGCTCATAGCTGATACACAAAACTGTCCCTTAATGAAAATCCTTTTAACTAAATTAGGCCAACCAAATTCTGGCGAGGTAGGATGGAGTATGTCATAGAAGCCGAAAACCTCACGATAACCTACAACGGTTATGAAGCCGTCAAAGACTTGACGTTTAAACTTAAAAAAGGCGAGACTATGCTTTTACTCGGCCCTAACGGTGCAGGTAAAACAACCCTACTCAAGGTTCTCGCCGGATTTCACACAGAGTACAGAGGGAGAGTTCTTGTTTTTGGAAAGCCCCCCATCGAAGTGAAGGATAGGGTCGCTTATGTTCCCCAGACTTTTTCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACTGAATAGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 6 1675644-1673062 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010835.1 Pyrococcus kukulkanii strain NCB100 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1675643 30 100.0 36 .............................. TTTATAGGAGTCTCAAGCAAGTCGCCTACTCCAGGA 1675577 30 100.0 38 .............................. GCAGTCTTCATAGTCACGTTCATCTTTCTCCTGCTCAC 1675509 30 100.0 36 .............................. CACGGCTGAGGATCTTGCCCTGTACTTGAACGTTGT 1675443 30 100.0 36 .............................. ATCAGCGCTAGTTCACGGGTGGAGTTGTTCAGTGAT 1675377 30 100.0 37 .............................. ACTTTCGCTCTCAATGTATGCCCTAACTAGGATCCTC 1675310 30 100.0 37 .............................. ACAACATAGTCCCTAGCATATAACGCGGTTATACTGG 1675243 30 100.0 37 .............................. AAGCGACGGCGACATCGGCGACTGGTCTAGCTACAGC 1675176 30 100.0 37 .............................. GGGGCTCCTTAGTCCTGGAGTCAACGGCGACGAACAC 1675109 30 100.0 37 .............................. GAGGTCTACGAAGACGAAGTATTTCTGCGGGTTCGCT 1675042 30 100.0 37 .............................. TGAGGAGTACGACAGCGTCCTCTACCACGCCCTCCAG 1674975 30 100.0 38 .............................. TACCCAATCCGCCGCTATCCTCCACGTAGGTCAAGTAG 1674907 30 100.0 37 .............................. CTATGAGTACCCAATAACCCGCAGAATGGCAGAGAAG 1674840 30 100.0 37 .............................. AGGCTCTTGAAGCTAGAGAGGGCTGTCGTGAAGTTTG 1674773 30 100.0 36 .............................. TCTCGCGGGCGAATTCAGTTAGTATGTGCCTTAGCG 1674707 30 100.0 37 .............................. ATACGCTCTCGCCCACTTCTCGTCATATCCCTGCATC 1674640 30 100.0 36 .............................. AAATCTTATTGATCAATTCACTCTCACCCATTCCCA 1674574 30 100.0 36 .............................. CGGCGGAGAAGATCGCGGAGAAGGTGGCCCTCATCT 1674508 30 100.0 36 .............................. GGAATCTCTCTATTGGTACCATAGCGCTTTTCTGCG 1674442 30 100.0 37 .............................. CAAAGCTCAGGATGAGGCCAGAGGAGTACCCAAGCAG 1674375 30 100.0 41 .............................. AGGTAATAAGGGCCGTCCCGCTCACACTTGAACGTGAGATG 1674304 30 100.0 37 .............................. GAAACCCTTGAACCTCGCCAAGTAGGTCCAGAGCATA 1674237 30 100.0 37 .............................. ACGTTCTTCAGTCCGTCAAGATCCCAGAGGCGGATGG 1674170 30 100.0 36 .............................. CTTGAACTCAGTGATGCTTCCGGATATATTTGCTTT 1674104 30 100.0 40 .............................. ATGCCCTCATCTGTAACCTCGACCACGCGGGCCGGCATCG 1674034 30 100.0 36 .............................. GATGTCGTTCACCGTGTCCACCGAGTCGGGAGCGAG 1673968 30 100.0 38 .............................. CAAGATAGACGCGATCAACATCTTCATCTTCAACTACT 1673900 30 100.0 38 .............................. ACGAGCCTGCCGTCGACGTAGACGTCAAGCTTCACCGG 1673832 30 100.0 38 .............................. CCGGTGGGGTTGGGCGCTATTGTCCCCCACCGGTGCCC 1673764 30 100.0 37 .............................. AAAAAGAAGCGACAACAGCCTCTTCTGGCTTCGTCGA 1673697 30 100.0 37 .............................. AGGGGAGGTCGCAAGGCTCGTTAGGCTCGCAAACGAG 1673630 30 100.0 36 .............................. GTACATCATCTCCACGAAGTCTACTTTCTCTAGGCC 1673564 30 100.0 37 .............................. CGGAGATCATCTTAGAGCGACGGCTCTACAAGTAGGA 1673497 30 100.0 37 .............................. CCGAACAAGTTCTACATCATAAAGAAGGAAGGAACTA 1673430 30 100.0 40 .............................. AGGCCCGCCACCGCCGCTATTCCCATTGACCATAACATGC 1673360 30 100.0 36 .............................. AGAAAAAGTACACGTGTAGTGACTGCAAGTATTTTG 1673294 30 100.0 36 .............................. TACACCACAATAACATATGACCCCAACGGAACATCT 1673228 30 100.0 36 .............................. TCACCCGTGACGTCATACTGCCAGCTGAAGACGCCA AA [1673209] 1673160 30 100.0 39 .............................. TAGATCACGCTGTACTCATCGAAGAGCTCCCTCCTCCTG 1673091 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 39 30 100.0 37 GTTCCAATAAGACTAAAATAGAATTGAAAG # Left flank : GGACAGCACAGTTGGTTCCTGACATCTGAAGATTTTTAGAAGCAATAGTAGATGCCTCAATTTAACAGATATCGCCCTTTTGATGTTTTTCTTGATTATTAAAGCCCGGAAAAGCGTTTGGACGTTTTTAACAATTTTTTGTTACTAAATACCAACATGCCCAGTATAGCATGCTAAAATATTACGAAATATTTTTGAGATTTTCAGATTTAGGAGAGAATTGCTTTAATATAGGCGTTCGGGCATATATATCGTTGTTTTGGTAAAAAATATAACCAAAATTATGAATCCGCAGTACAGAGTGGTGAGCAACCTTTGCACGTCCTTAACGCTGGTAAGAAATATCATCAATACTTCCCACAATTACAAATTTCAGCCAGTTTGTCATCCTTTAGTATAGATATTTTTCATAGGCTTTCATAACTCCCCTTCAGCAAAAAGCTTATATTAATAGAGACACCTTAAAAGAGTTTAGACGAAATGAGAGAAAAATCGCACCT # Right flank : ATACTTCACAAGGGGAGACGTCAACATCCAGGTCATAACGACATACAACCTCACAATTACTGTCTTCGCATTTATTGGACACATATTCGCCATTATGGAGGCAATAAACTATATGATGTGAAAAATATAACATCGAAAAGGCCAGATTGTATACTTTAGCAAACTATCCTCCGGATCACAAACCTAAAACCTAAATACCCCCTACAAGAACGAGCCAAACATGAACTACAGAGAAGAGTTCCAAAAGATCAACAGGAAGCTCGTGGAAAGGTACGCCAAGCTAGATGATGCCGAAGATTTCTGGGCCTACCTTTACAAACCTTTAAGACCGAGCATCAGGATAAACACCCTTAAGGGCAACCTTGACGAGATAAAGTCGATGCTTGAGGAGAAGTTTGAGCTCGAGAGAATTCCGTGGACGAAGGGAGAGGGATTTTTCATTAAATCTCATGATGTAAACTTCGGCCAGCTAATTGAATACTCCCTCGGCCTGATTATTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 7 1706465-1707642 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010835.1 Pyrococcus kukulkanii strain NCB100 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 1706465 29 100.0 41 ............................. TACAGATGTGAAGGAGAGACAGTATGAGTTGAATACTCTCC 1706535 29 100.0 40 ............................. TCGATGAGGTCTTCACCAAGCTCGGAAGGCCCATCAACAT 1706604 29 100.0 46 ............................. CTAGAAGTCACGTTGTTCGCCAGTAGGGGGAACTCGCCCTTCTCGG 1706679 29 100.0 47 ............................. AAGATCCCCGGCGTCCCAGAAGATATCTCTGAGGCGATCAGGTTTCC 1706755 29 100.0 37 ............................. ATTACATCATTGGCGATGTACTTCTTGAACTCCTCGC 1706821 29 100.0 38 ............................. TAGATCCGCAAGACAGGCAGAACAGTGGGCCATCACTC 1706888 29 100.0 50 ............................. CTGACCTGTTTCCTGAATAGAGCCTGTAAACACCTAGCTTTTCGTGGTAT 1706967 29 100.0 47 ............................. AGGAAGCTGTCAAAGTCCTCGAAGTACTCAACAACCTTCTCGGCCAG 1707043 29 100.0 44 ............................. GGTGTGATGAGCCTGAGACGGTAGTATCCATCGCCCAGGCTGGG 1707116 29 100.0 40 ............................. GCGATGAGCCCAGGTTTTATGTCCTTATCGTCAAATGCCG 1707185 29 100.0 55 ............................. ATAAGGCGTGGTTCAACGATGTATTCGCTCAGTCTGGCCCTCGCCTCGTTCTCGT 1707269 29 100.0 41 ............................. CTTCTTCACGTAGTAGTCTGAGTACACTGTGTTCGTATGCT 1707339 29 100.0 37 ............................. ATGCCCTAGCGTATTCGGAAGCCGTTTCTTCCGATAA 1707405 29 100.0 37 ............................. TTTTTCCATTCACCTTGATCAGGAATGCTTCCTTTCC 1707471 29 100.0 40 ............................. ACGAACTCATCAAAGACCCTATCTTCATCGCCATAGTACT 1707540 29 100.0 45 ............................. AAGTCTTGTAACTATCAGAAGGTCAAAAGTACGAATTTTCATTAA 1707614 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================= ================== 17 29 100.0 43 GTTTCCGTAGAACTAAATAGTGTGGAAAG # Left flank : TTTTTCATTTGTGTGTTTTAGTTTTTCTAGCCTTGTTTTGTTGTGTTAAAGACCTGCTCGGGTCCAAAATCACAATTTAAGAGCTTGATCAGGGTAATATTGGGTTTAATTCAATATTATTGATTTTTGCTTTTGGATTATCTCATCAGTGGTAATTTGTTGGATGTTTTATCTAATTGGGAGGTTATAACTTCTTTTAGCCTTATTCTTGAGTTAAAGTCCTAAGACCCTCAAATTGGATAGTCTAGGGGCTCTAGTTAACTCGCGTTCTCGAGTTAATTTGATGACTCGAGGTTTTATCGAGTTTATTTAATTTCGATTGATTGAGAGTTAATTTCATTGGTTTATAACCATGAGTTAATGGTGAACTCCATGTTATTCCCTTCATTATTTTCGGGGTAAGTTTATAAAGGGAGGGCGGTGCTACCGGTTCCTCGCGAGGGCAAATTATTTAAGCTCCCACAAGAGAATACTAACCGAAAAAAGCCAAAAGTCAAAGG # Right flank : GGAAGGCACATCTTCAAGACCCATGTTCGCGTCATTTTATCGGAAATCCATGTGCTAATGCTAAGTAAACAGCTCCAAGCAAACATTGCACTCCTCTGGATTTAGCGTTGGATCTATGAGAGAATGGAAGCTGCAGACGTATCCTCTACCCAACATCTCCAAGGTTAGCTTTACAAGGGCCTTGTGGATCTCATACTCGCTGGGCCTCTCCTCTATCACCCACTCCGCTATTTCTCCGACTTTTTCATCTATATCCTTGAACTGCTCAACGTCAATTAATGCTCCCCTGTCTTTCCTTAAGTACCTTGAAACGGCCGACTGCGTTATGTGCAAAAGCTCGGCTATTTCATCTTGCTTTAGCCCTTTTTCCCTAAGAACTTGGACTAACCTCCTCCTTAAAGATGGGTAAACGTAGCGGGAAGCGACTTCGAAGGCTGAAACTTTCATGCTCGTAAATTATGACACGTGGTATATAAGGTTATCCCCTGAGCATGTCGTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACTAAATAGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //