Array 1 386954-381370 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHKO010000002.1 Niastella sp. MAH-29 platanus_K_17_124_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 386953 47 100.0 30 ............................................... TTAAGCCTGTCAATCTTACTGCCCAGTTTG 386876 47 100.0 31 ............................................... CAGTATGCCCCCAGGTTCATTCGAGCAATGA 386798 47 100.0 30 ............................................... AGTAGGTCATTTCTGAATACACCTCAACCT 386721 47 100.0 30 ............................................... AAAATCATTGCTTTGCTGATTTGCCACCCG 386644 47 100.0 29 ............................................... TGGAATTTACTTAGCTGGCGAAAGAGAGG 386568 47 100.0 29 ............................................... ATAAAGAGAATAGCGACAGACGTATGTAC 386492 47 100.0 30 ............................................... TGCGCCTGGTACGTCACTCTGATATTGATA 386415 47 100.0 30 ............................................... GATCCTTACCCCCAATAGAATAGTAAACAT 386338 47 100.0 30 ............................................... CCCATGCCCACGCGTAAACTAATACCACAA 386261 47 100.0 30 ............................................... AAATATTTGTAGTTGTGAAATCTTGTGATG 386184 47 100.0 30 ............................................... GTTTGCGTATAGTACCAGTCGAGCAACATA 386107 47 100.0 30 ............................................... TTATTACGAGTTGCACGAGCAATTAATATT 386030 47 100.0 30 ............................................... ACAAACCTGTGGATGTATGCGTTTAACCGA 385953 47 100.0 30 ............................................... AGGCGATTAATGCCGCCTGCAAAAGACCTT 385876 47 100.0 31 ............................................... TACAAAAAGACGCGAAAAATTATGTTCATAG 385798 47 100.0 28 ............................................... ATAACTTCGATATAGTAGTCTTTGAGAT 385723 47 100.0 30 ............................................... GTCCAATCTTGACAAGTGACTCGTATTCTT 385646 47 100.0 30 ............................................... TCAAGACGAGGAAAGCTGTGATATGTACGC 385569 47 100.0 30 ............................................... AACTTCTGTCGTTTTAAATCTTTCGCCAAC 385492 47 100.0 31 ............................................... AGCGCAAGGGGTATCCGGGCAGAATGGAGAA 385414 47 100.0 30 ............................................... GTGACTCCCAATAACAAACTACTTCCAGTT 385337 47 100.0 30 ............................................... TGGTGCCTTATAGCATTCGTATTGGGCTGA 385260 47 100.0 30 ............................................... CCTGGAAGACGATTGCGACTTCCGTAACCT 385183 47 100.0 31 ............................................... CATCTGGCATAGAAGCAACAATCTCCTGTGG 385105 47 100.0 30 ............................................... TGAGGTTCTTGCCGCCGCAATGTAGACATA 385028 47 97.9 30 ...................G........................... GTTGGTAGGGCTCCGTGCTCAGAATTACCC 384951 47 100.0 30 ............................................... ACCCTCCGGCTTCATTGCCGTTGGTGAAGT 384874 47 100.0 30 ............................................... GAGAAGCCAGCCAAGGATAGCATAATAATT 384797 47 100.0 31 ............................................... CTTCGATCGCTCGTTTGGCATAGTCGGTGGT 384719 47 100.0 30 ............................................... AGCTTTACGTAGCGGCTTAAATAGTTTTGC 384642 47 100.0 31 ............................................... ACCTTCGTCCACTCACTGGCATCCGCTGTTA 384564 47 100.0 29 ............................................... GGCATGGGGCTAGGGATATGGGGAATGAT 384488 47 100.0 31 ............................................... TAACGGGTCAAGTGTAAAGGAAATTGCATTA 384410 47 100.0 30 ............................................... ATGGCGGAGTATCGAGCTTCCAAATTTGGC 384333 47 100.0 30 ............................................... TCTGCCCCAACGGGCATGTGCAATATTACA 384256 47 100.0 30 ............................................... TGGAATGTAGCAATTCCTCCACCCCCTGGC 384179 47 100.0 30 ............................................... GATCAGTTACCGAAGCAAACACAAAAGGAA 384102 47 100.0 30 ............................................... TGCGTCACTAAATAATAACGCGTTCAATGA 384025 47 100.0 31 ............................................... GATATCATGGAAGAGCATGAGAAGCAGTTTA 383947 47 100.0 30 ............................................... GCAGGGCATTAATTGTAAATGGTGAATGTG 383870 47 100.0 30 ............................................... GGTGATTTGCGTACGTTGTACATTTTCATT 383793 47 100.0 28 ............................................... GCCATTCTTCTGTTGTTGAGTGATTTAA 383718 47 100.0 30 ............................................... TGTAACAAGCGGCACACTATATACTAGATA 383641 47 97.9 30 .....G......................................... ACCCCGCCGTGAACGTGAGATAAAAAACTT 383564 47 93.6 30 .....G....A..........A......................... CAGCAATTTGCAGCCCTTATAGACAACGAA 383487 47 97.9 29 ..........................................G.... TAGAAGAACAAAAAGAAACACGTAAAAAA 383411 47 93.6 30 .....G..................G................A..... CTACTGTGCCTGTAGTGCCTGCTTCATGGG 383334 47 100.0 29 ............................................... AGGTAGAAAGTTGGGAGGCCCTGGCGACT 383258 47 95.7 30 .....G..............T.......................... CTTGTGCCACCCTGAATAAATCCGTTCTTC 383181 47 95.7 29 .....G..G...................................... TCTTAGCGTACTCAAATAAAATCTTCGGT 383105 47 97.9 30 .....G......................................... TACACAGGACATGTTCAATAAACTGGACAG 383028 47 95.7 30 .........A...............C..................... TGGTTCAAGCATTGGTAAACTTTTATGGTT 382951 47 100.0 30 ............................................... ACAGAAATTACCGGGCACCTACTGCATGTA 382874 47 97.9 30 .................T............................. AACACTCCTTTAGCCGTATTAGGTACTATA 382797 47 97.9 30 .....G......................................... ACTTGTTTCAGTGCTGCGGCGAGCGCTTCA TAA [382766] 382717 47 95.7 29 ........G..C................................... AGAGATACGCAAAAGGGTTAGCAGTTCGG 382641 47 97.9 30 .....G......................................... TGATCAAAAGGCACAACCATGGTGGCGATA 382564 47 97.9 29 .....G......................................... AGAGATACGCAAAAGGGTTAGCCGTTCGG 382488 47 93.6 30 .....G..C...................................G.. AACTTCATATTCGGGCATAATGCCGGTACA 382411 47 97.9 31 .....G......................................... ATCTCCTGCCCGACCTTAAAGTTGAAATGGC 382333 47 93.6 27 .....G...............A..T...................... AGCAGGTAATTAGGATTGGCCATTTTT 382259 47 95.7 30 .....G.............G........................... CCACTGAATGACTTTATTGTGGGGTACCTG 382182 47 95.7 30 .....G.............G........................... AGTTTTGCAAGTGCTTCAGCTTGTGTCATA 382105 47 97.9 29 .....G......................................... GCAGTGGCGCAGAAGAAAGAAACGTGGGT 382029 47 93.6 30 .....G...T......T.............................. ACGACACAAACATTTGTTAACACTTAAATT 381952 47 95.7 30 .....G..............T.......................... TTTGGAATAACATTATAATCTTAGATTATA 381875 47 95.7 30 .....G.................G....................... TAAATCCATTACCCCCGATAATCAAAACTC 381798 47 93.6 30 .....G..........T..G........................... AAAGACCTTGGCGGCCGGCACAATATACAT 381721 47 95.7 30 .....G..........T.............................. TGTTACTACCTCCTGTAGCGCTGTATGTTG 381644 47 93.6 30 .....G...A.........G........................... ATGGCCATGGCCAGATTCTTTACCTCCCCA 381567 45 95.7 30 .........................--.................... ACAGTATACTTCATGCCTTTGAACGTGTAA 381492 47 93.6 30 .....G..........A....A......................... ATGAAGTTCCCAATACAAGTACTGACACAT 381415 46 91.5 0 .....G...A........................-...........T | ========== ====== ====== ====== =============================================== =============================== ================== 73 47 98.3 30 GCTGTATCAGCTCTAAGCTACTGAATAATTTGAAAGCAATTCACAAC # Left flank : CGCGGTTCAGCGCACCACCGCTAGCCTGGCCAAATGTTTTGAAGGGAAATCACGAAAAATTTTATATCCTGAGCTTTGAACGATTAAATGCCTATCGAATCATGTGGGTATTAGTTTTTTTTGACTTGCCTACGGAAACCAAAAAGGACCGTAAGATCTATGCCCGGTTCCGAAAGGAGATTATGGCGTATGGATTTCAGATGTTCCAGTTCAGTATTTACTTGCGACATTGTAGCAGCCGGGAGAACGCTAATGTTCATATTGAGAGGGTGAAAAAGATTTTGCCAGAAAAGGGGCATATTGGGATTATGTGTATAACAGACAAGCAGTTCGGGATGATGGAAATATTTCGGGGACAGGATCAGGTTAAGGCGCCGGAAACGGTTCAACAGTTGGAGCTTTTTTAGGTCTATAGGATGAAAAAAGTGCCTTCTCAAACCAGTTTTTAGGTCCTGTAAAACAGTTAAAAAGCACAACAGGACTGGGTTCTAGCCAATCCT # Right flank : AACCTTCTTTTGTTTCCTGCCAAAATTAGCGTATACTAGAGGCAGCAATGAAACATATTATAATATTCTTTGTAGCGACAGCTTTTTCGGTTGGGGTATTCAGCCAGACAAAAAAAGTAACAGGTAACCTATCAACCTCCGACACGGCTGATCTCACCATTTTAAACATCTACCCCGATTCTTTTCCCAATGTATCGGTTGTGTTTAAAGCCGAAACAAGAAAAGGCGAACCCGTCTGGAATTTAACAAAAGAGAAAATGGCGGTCAGGGAGAATACACAACATTGTGAGGTGGTCTCACTGGCCCAGATCTCCAAATACAAACCGATCAATATTGGCATTGTGATTGACCATTCCGGCTCTATGCGAATGGGTATACACCCCATCGTTGATAGTTTCGGTAATCCAACGAATACCTATAACGTAGATAGCATTGCGCCTATTGATAATGCAAAATCTGCCGTCAAAACATTTGTCTCTACGTTCAATACAAAAAAGGAT # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTATCAGCTCTAAGCTACTGAATAATTTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [43-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 687910-691615 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHKO010000005.1 Niastella sp. MAH-29 platanus_K_17_124_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 687910 30 100.0 38 .............................. TTTTATAAGTCCTTTCATTAAACCAGCCAACCCAAACA 687978 30 100.0 35 .............................. TCATAAGACAACACCTCGAACGAACCCGCCTTGAA 688043 30 100.0 37 .............................. TGGTTTGCTATCCGGGAGAGTTTTCTGGTTTCCGGTA 688110 30 100.0 35 .............................. TTGTCTACTCCGTTTGTCGTTAGTCCATCTGCGCA 688175 30 100.0 34 .............................. TCGTAAGATAACACCTCGAATGAACCTGCTTTGA 688239 30 100.0 35 .............................. AGGGTTGGCGCCTGCACACGGGACGGCGGGTTTTC 688304 30 100.0 35 .............................. AGTTGAGCAATACGCTCCGTAAGCTTTACGGCCTC 688369 30 100.0 37 .............................. ATTGTTCCGCGGAAGAAACCGATTGTTCCGCGGAACA 688436 30 100.0 35 .............................. GCGGATGATGACTACCTGAAAGAAAATAAACTGAG 688501 30 100.0 37 .............................. AAATCAGTACGGCATGAGATTGCCGCGCAGTTGGTGG 688568 30 100.0 36 .............................. AGGATTACCTGCGCTTTAAAGTGCAGTTCAAGTATG 688634 30 100.0 35 .............................. AAAATAACGTTCGGCCAGTACATAGAGTTGTCATT 688699 30 100.0 36 .............................. ACGCAGAAGCGCTATCATTAAGGTCAGATTGAGTTA 688765 30 100.0 36 .............................. AAGTTGAGATTAATTTAACCGAAGGAGTATTGAAGC 688831 30 100.0 38 .............................. TAGTTTTAATGAAAGAGAGTCGCAGACGTGGCCTGCAT 688899 30 100.0 35 .............................. TTGATTACTATCAGGCGTACTGCCGGCCATGGATG 688964 30 100.0 35 .............................. ATAACTGATAAAACTGTGCGCAATTGGGAGGTAAA 689029 30 100.0 36 .............................. GTGAGTGAAAGGTTTGGAATAAATACATCGAAATTG 689095 30 100.0 34 .............................. AGTGTATACTGTAATTTAAATCGTTTGTTTTCGG 689159 30 100.0 37 .............................. GGACCAATCCAGCAGCTGCATAACTTAGTGCAATTAT 689226 30 100.0 35 .............................. ATGAACAACAGATAGGCAGGCGCTGGCGTGAAAGG 689291 30 100.0 37 .............................. GGAGCACAACCCACCACTCACCTCTATAAGGCCACAG 689358 30 100.0 35 .............................. CTAGCTATCGATCCACTATCATTGATCACTTTAAG 689423 30 100.0 35 .............................. TTATTAATATTTAATCCGTGCCTTACAAATGTAAA 689488 30 100.0 37 .............................. ATGAAGTCTTTAAACCATTGCGGATCGTTGTCAGCCA 689555 30 100.0 35 .............................. CGTAAAGATTTTTACTTGAAAAAATATGAAATGAT 689620 30 100.0 35 .............................. GCGATCATCCTGTTTACATTAATAGCAAACCACCA 689685 30 100.0 39 .............................. TTCTGTGTGGCATTGTGAACCGATTTTAAGTCGGGCCGG 689754 30 100.0 37 .............................. ATGTAAAAAAAGATGTCTTTTTAGGTGGGAGTAAAAG 689821 30 100.0 35 .............................. CTAATAAGTAAGTTACAGGCATTGGAAGCCAGATT 689886 30 100.0 36 .............................. GTGTATACGGAATTACAGGAAGACCAAAAAGAGAAA 689952 30 100.0 36 .............................. AAGCTAGGCACTCACGACCTGGGCGTTGACTTCATT 690018 30 100.0 38 .............................. TTGAATGCACGGTCGACGATAATCTGTATGCCCTGGTG 690086 30 100.0 34 .............................. ATTATATAACAAACATCGATACTTATATAAACTA 690150 30 100.0 34 .............................. CAATTAAGATTAAACAATGAAACTATATTTCATT 690214 30 100.0 34 .............................. ATAAAACCGGATTGGGTTTAAATGTGCACCTCTT 690278 30 100.0 35 .............................. AGTGATAGCTTGAATGTGATAGCCCCTACAAAAAT 690343 30 100.0 34 .............................. ATGTCCGTGAAAGGCTATAAAGCTATCCTACGTA 690407 30 100.0 34 .............................. AAGTCTGTAGAGGTTAGCGACCTATCAGCCTCCG 690471 30 100.0 34 .............................. TCAGCAACAATAGCACTACCGTTCACACTCAACT 690535 30 100.0 37 .............................. GCAGATATATTCTCGTTACGCAATCAAAAGCGCAAAG 690602 30 100.0 36 .............................. TCGTTAGCGCCCGCCTGAGCGTTTTCGCTGGCGTGG 690668 30 100.0 34 .............................. AGCAAATACCAGAAAGCCCTTTAAAAGAACATTA 690732 30 100.0 35 .............................. AGTATGCTAATGACTTCTTGCAATTCTGGTTGCTT 690797 30 100.0 35 .............................. ATGAAGAAGCGCCGCCAATCTGAGATTTACGATAA 690862 30 100.0 35 .............................. GAATATACCAATGCGGTAAAAAATGTTGAAGAGCT 690927 30 100.0 36 .............................. AAGAAGTAAACAATTCTTACTTTGTGCGGGTCTTTG 690993 30 100.0 36 .............................. AAGAAGTAAACAATTCTTACTTTGTGCGGGTCTTTG 691059 30 100.0 35 .............................. TTGATTAAAGCCTTTCTATATTCTGGTATAGGATG 691124 30 100.0 39 .............................. ATATTACATCTCTCTAAATGGCTTACGGTTACTTGCAAA 691193 30 100.0 36 .............................. TTGGATTCAGCTACTGCGATCTGTAAGGCAAATCTG 691259 30 100.0 34 .............................. CTGGCAGTTTTCGCTTTACCATCCTTTTGATTCA 691323 30 100.0 36 .............................. CCAGCTTTGTAGCGAACACCGAGCACAGATTCACCG 691389 30 100.0 37 .............................. AAATCTGCCTTATCAATAGCAATCCCAAGATCAAAGG 691456 30 96.7 35 ............................G. CAGGTTGATTAGTTAACAGTACAATCCGATGTAGG 691521 30 96.7 35 ...........C.................. GTGGATCCGCGAAGTGGCCTATATAATGCTGAAAA 691586 30 80.0 0 ............T............TTCCT | ========== ====== ====== ====== ============================== ======================================= ================== 57 30 99.5 36 GTTATAATCGCACCATGGAGGAATTGAAAC # Left flank : GTATAAGCCATTTAAAGCCTGGTGGTAATATGTACATAATTCTAGTGTATGATATCGGAGAAAAGCGGGTAGCTAAAATGCTCAAACTATGCCGCCGCTACCTGAACTGGATACAGAACAGCGTATTTGAAGGAGAAATTACCAGTGTTAAACTGAAGGAACTCATTCATGAAGCGAAGTGCATAATGGAAGAGGAAAAGGACAGCCTGATCATCTTCAAAAGCCGCGAGGAGAAATGGCTGGAAAAGCAGATAGTTGGACAAGAAAAAAATGATCTGGATAATATACTTTAGTCGTCGTTGTCATGTTATTGCGGAAGGGAAATATAGTTTTTATACCCTTGTTTTTGGGAATTGCCACACCGAAAGAAACTAGACGTGGTTGTCGATGCCCGCTAAGAATCATAGAAATGGGGAACGACAATTTTTTAAGTTCCAATAAAGATGATTATTTAACTAAAAAGGCTGAAAAACAATGTTTTATACGGCTGCAATAAACGG # Right flank : TTTGAAGGCGCCATTTCTATAGGTCCTTTACCAATTATGGGATACCTGTAATGAAATAATATATCCAACACCATTTCAGCCAAAAGATCTTCTTTATTAAGAACAATCCCTAAATGCGAAATATGGCCTTCAAAGCGTCCTTTTTGATCTTCGCGAGCAAAAGGTAAGACTGGCCTGAATCAAATAAATTGCCTGGAACAATAATCGGCCTAAAAACGACCACCAAAGCTGACGAAGAACCAACATCACCGGATTTTACAGCTCGTCCTTTGAATTCAATTATTCATTACATTTAGGTACGATTTGCAATGAAGGAAATAAATGGTAGTGAGTGATCTTGTGAGTGATTTGAAAGTGTCTTTGTAATTGATTAGATAACAGTATTATATAAGCGGGGAAGGTGATCCTCTCTCTCCGCAAAACAAAATAAGTGCCCCCAATAGGGGGCATTTTTCATTTGGGAGGGTGGCGAGCTTGCTCGCCAAACCGGACAAAGGAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATCGCACCATGGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 1234962-1242312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHKO010000004.1 Niastella sp. MAH-29 platanus_K_17_124_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================================================================================================== ================== 1234962 30 86.7 35 ......AC..T......G............ TAGGTTGTGATATATTGATCCAGATCCATTGTCGT 1235027 30 80.0 22 ...CC.A.C........T...........T ATTTAAGAGGATGTGATTTGGC Deletion [1235079] 1235079 30 86.7 99 ....A.A........C.G............ AACTTATTAAACGATAGGTCGAAGACTTATGTGCCAGCTCGTGTCGCACTATGGACGAAAAACGCACAACACCTTGTTTGGGAATTGGCATAGAGCATT 1235208 30 80.0 168 ......AC......T..A.T.........T TCGGAAGCTCTTTGACATATAGGAACAAAAATGTTTATTAATTATATCATAGAAAAATTGAAACGAACAGCTTTTCTTTATCAGCAATCAACATCACGCGAGTATTCAAATCAAACCATAGAGGAATTATAACAACAGGAAGCACAGCTGCTTAGTAGACATCTCCTT 1235406 30 83.3 99 .CA...A........C.G............ GATGAACGCGGTATGTGTGACCGAATGTTGGACTTAATAAATTACACCATGATAGAATTGAAACTTACATGATCTTATAGGAAGCACTGTAAATGTTCT 1235535 30 90.0 34 T.....A..........T............ TGTCAAACGACAGGGCGCCCTGGATGAAGTTTGG 1235599 30 100.0 36 .............................. TAATTCACGCGGCCTACCTTGTAGTTGGGTAACCGG 1235665 30 100.0 36 .............................. TCGGTAGCAACGATCTAACCTTCGCGGCTACATCAA 1235731 30 100.0 37 .............................. CCTGATACAACTACGAAGGTTATCACTGATTCAGTTG 1235798 30 100.0 36 .............................. AAGTTTAGGAAATACTTTTCAGTTAGATGCGCCGCC 1235864 30 100.0 76 .............................. CCATTGAAGTAGCCGCTCCATCGGATCTGCGCTTATCGATTGATTTGCTGCGCGAATTTTCGCGACGGATTTTATA 1235970 30 90.0 35 ...CA.A....................... GGTAAGAAGGATAGTATAGCCAGTTGGGTGTTTAG 1236036 30 100.0 35 .............................. TACATAACAATGGTTGTTTCTTTTCGAGATGGCTT 1236101 30 100.0 34 .............................. AGAGAACACGCCAGCTTTAACTTCTCTTTCAGTT 1236165 30 100.0 37 .............................. TCGCTGGTAGTACAATATTCGTGGGTACGCGAATAGT 1236232 30 100.0 36 .............................. TTCCCAAGCCCATATTTTCTTTTTTTTGATTAGGAC 1236298 30 100.0 35 .............................. TAAGGTCAGTAAATACACATTACACTTAGCCCCAG 1236363 30 100.0 37 .............................. ATTGGTTTATCATTAAATTGAAGCGTTGCGTTTTCTA 1236430 30 100.0 36 .............................. TAGTCAGCATCCAACGGGTTTGTAATTTTCAATCTA 1236496 30 100.0 36 .............................. TTGAATCACCCTCGGTTACTCTGATTCATTCGTTTA 1236562 30 100.0 36 .............................. TTGAATCACCCTCGGTTACTCTGATTCATTCGTTTA 1236628 30 100.0 36 .............................. TAGTCAGCATCCAACGGGTTTGTAATTTTCAATCTA 1236694 30 100.0 35 .............................. ATAATTTCGTGGAGCTGCCCCATATGGCCGATGTA 1236759 30 100.0 36 .............................. TTACTGCTGCATAACAGTCATCGCCATATAGCGAGT 1236825 30 100.0 37 .............................. AAAGATTTGATTCTTATTGATGGCAATAAGGTACCGC 1236892 30 100.0 37 .............................. AAGGGAGCCGAACCCTGTAATTCTTTAATCCATCCTG 1236959 30 96.7 36 .................T............ CCATCATTGGGCACTGGGGTCCATGAAGAAAAAAAC 1237025 30 86.7 34 ...CC.A..........G............ CCTTCTACCTGAACTTTGTCTTTTGGAGTAAAGT 1237090 30 63.3 37 .CACC.A.C....G.A.G.AA......... TGCTTTTCTGTTGTTCTATCAACAATAGCGGATTGTT 1237157 30 83.3 36 ...CC.A.......G..T............ AAAATTGTCTTTTGTTGTAGTGTATTGAGTTCATCA 1237224 29 80.0 29 AAC...A..........G...-........ CGAGCTACAAAAGAAAATACTATCCAGTT CA [1237233] 1237284 30 90.0 35 .C....A..........T............ CATTTCACGTTTGAAAAACTTGCCGAAAAATTCGG 1237349 30 93.3 36 TA............................ GTGGTGATGTGACGCTGTTTTTCATGACCAGCTTGC 1237415 30 96.7 34 .............................T ATGTGTAAGCGTGCCATAATAAAAAATTTAACAG 1237479 30 80.0 35 .G..C.A...T......TT........... ATTATGCTTTGCATCTGTGCAATACACAATTGCAA C [1237483] 1237545 30 80.0 33 .A..T.A.........TG.......A.... TGTACTACGCCTTTAGGCGACGGCTAGTATAGT C [1237549] 1237609 30 80.0 36 AACAC.A....................... GTGTATCACTTGCCTATTTCGGGATCGGGCATCTTG 1237675 30 83.3 36 ....C.A.A........T...........T AGCACAGTGTTGTAAAAGGCTTTTAGCTTATTGTCA 1237741 30 80.0 35 .CCCC.A..........T............ TGGGTTGATGAGGCCGGCATGGTTAAAGTCCTATT 1237806 30 100.0 36 .............................. CTTACTATTAACCGTGCTAACGTAGTCGTTCCAGTT 1237872 30 96.7 37 ................T............. GACCATAGCCACCAGGGCAACCAGGGCGCCGCCAGCA 1237939 30 100.0 36 .............................. CCGAATTGGTGGCAACAGAATCGAAAGGAAATGGGA 1238005 30 100.0 35 .............................. AATGCAGCCACTAACAAAGTAGCCAAAGCGATTTT 1238070 30 96.7 37 ....A......................... TACGTGTCTGCTCAATTATGGCGTCGATGGCTTCGCA 1238137 30 80.0 33 ...CC.A........C..C..........T CAATTTTAGTTCTTTTATAAGTCACAATTATCA 1238201 30 76.7 14 A.....A...T......G.......C.TC. ACTTTTGCGAAACC Deletion [1238245] 1238245 30 96.7 36 ............T................. TTGCAAACGCCTCGATCATAGCATTTGCCGCGTCCG 1238311 30 100.0 35 .............................. ATTGCTCCAGGAATGTAAATACCATCGTTGCCATC 1238376 30 93.3 37 ......A..........T............ CGATATCTGAGAGCAGTGCTTCCCATGTTAGATATCA 1238443 30 90.0 36 ......A........C.T............ CGCACAGCAGTCATCGTAATGTCGGCCAGCGGCGCG 1238509 30 100.0 35 .............................. TGGGCATCAACGGGGCTTTCACTTAAGGGATACAG 1238574 30 100.0 36 .............................. ATGAAATTGTCGTCTGGTGGAAGCTTTACCGAGTTT 1238640 30 100.0 35 .............................. GTGTGTGATCGTTTTCTTACTCATCTGCCGCCCCC 1238705 30 100.0 36 .............................. ATCATACATACAACCTGAAATGCCGCCGCCAATACA 1238771 30 100.0 37 .............................. AATAGGGGCTGGATCCAATATACCCGCGTCCATGCCC 1238838 30 100.0 35 .............................. TTACTTTAGTCTTATTTTTCTTCGGTGGTACAAGC 1238903 30 100.0 36 .............................. TGATTAAGGATACTTAACTTCCCACCCGGCCAAAGA 1238969 30 100.0 36 .............................. ATGTAGTTTAGGTTGGCAACGGTGTCAGGATTCAGC 1239035 30 100.0 36 .............................. GGTAACAGTGATGACGTAGTGTGGAGGCAGGATGAA 1239101 30 100.0 36 .............................. TTGCGAATGGAAATCATGAGTCTGCATTTTAAGTGT 1239167 30 100.0 37 .............................. TATAGGTTAGAAAGAGGGTCAAGACGAATACCTTGTA 1239234 30 100.0 35 .............................. TCAACATGGAGGCGGTCATCTCGAACATGAAATTC 1239299 30 100.0 35 .............................. GGATTTGTACAGCCAAGGCCTCAAAGGGACGCAGG 1239364 30 100.0 35 .............................. TTAATTATAGTCGCTTTGGTTTATGGGGCAGTAGG 1239429 30 100.0 37 .............................. TATTTTACTGATGTTTATAATATGTGGAGTAACTCGG 1239496 30 100.0 35 .............................. AAAGAAGTAACTGCACAACACCCAGACCCATCCAT 1239561 30 100.0 36 .............................. GTTACTCGGGGTAACTTTCATTGCGCTGCGTTGGCA 1239627 30 100.0 35 .............................. TGTCTGCAGGCTCACCAAAGGCGTTCTCTCCGTAC 1239692 30 100.0 34 .............................. AGAGAACACGCCAGCTTTAACTTCTCTTTCAGTT 1239756 30 96.7 36 ............T................. TTGCAAACGCCTCGATCATAGCATTTGCCGCGTCCG 1239822 30 100.0 35 .............................. CTATATATATCGAGCAGGTGCCCGCTGATTGTTCT 1239887 30 96.7 36 .................T............ GGCATTGATATAAACGACAGGAATAAGTGACAAAGT 1239953 30 100.0 34 .............................. CCCTCAACCTGAATTTTGTCTTTTGGCGTGAAGT 1240017 30 93.3 35 ......A..........T............ TTGATGTAGATCAAAAAAGAAAGCCCGTACTGATC 1240082 30 93.3 36 ......A..........T............ TCGCCAAACGTTTTGACCGCTCACTCCCAATTACCG 1240148 29 73.3 64 TC..-.A..A...T...GT........... CCATCATTCGGCACCAGAAAGAAGGTCGCTAAAAAAACACCGCGGCTGCATGACACTTGTTATT G [1240173] 1240242 30 96.7 38 ......A....................... TCCTGTTCTCACACTACAACGCCACCCGTGCTTGCAAA 1240310 30 93.3 36 ......A........C.............. AAATTAAAAGAATCTGACAATATAGATAAGCTGGCA 1240376 30 90.0 36 A.C...A....................... GAAGAACTGCTGAGACGGCAGTTATATAAGGAGTTT 1240442 30 93.3 36 ......A..........T............ GTTATGTAATTGCCTGCCGCCTGTTTGCCGGCTATC 1240508 30 96.7 35 ..........................G... TAATACAGGGTTGACATTTGAGAGAAAGACCGTCA 1240573 30 86.7 29 ......A.........TA......C..... GAAGAGAGTAAAGATATCGTTACTGATTC 1240632 30 96.7 54 T............................. CTTTTTATGGATGATATTTTTGGCCGGGAGTTCTTTGCTTCAATTGACAGCCAA 1240716 30 90.0 34 ......A.........GT............ TGGAAGCCCTCAGAATTGGAGTAGCGCAAGACCG 1240780 30 86.7 36 ....A.A...T......T............ ATTTATAAAAAACCTCGAAACGACGAAGGTCATTGG 1240846 30 96.7 37 .................T............ AACTTGGTTGGCGCGAATGTTCGCGACGGATTTTATA 1240913 30 90.0 35 ...CA.A....................... TTTTTAAATGATCCAGTTAACCATTCGTACCCCGT 1240979 30 96.7 36 T............................. TACGATGAAAAAAAAGAAATAACACTTAAAAAGTAA 1241045 30 76.7 33 ...CC.A...G.G.....C..........T CGATTTTAGTTCTTTTTCTACATCACACTATCG 1241109 30 83.3 35 A...A.A.........GG............ GACGACCAGGCAATACAGGAAAATATCACAAAGGC 1241174 30 63.3 35 AACAC.A.C......A.GG.....A..... TCGAGGATGCGCGTGAGTACAACAACGAGTAATTC 1241239 30 80.0 35 ACC...A.........TG............ AGCACATAATCATTAAAGGCATCCATGATGACTAT 1241304 30 83.3 34 .CCA..A..........G............ GCCATTGTGTTAACATCGTTAACCGATGAAGCAA 1241368 30 93.3 36 ..C...A....................... CATTTCACGTTTGAAAAACTGGCCGAAAAATTCGGC 1241434 30 100.0 35 .............................. TTGAGAAACCCGTCCTCAATCTCGCTAACGGTCTG 1241499 30 100.0 36 .............................. CCATTTAACGACGCCGTACCAGATGGGGCACCGCTA 1241565 30 96.7 35 ......A....................... ACAGTTGACCTGGTATAACCGCCACCGGGTATTTA 1241630 30 96.7 35 ................C............. AACCAGACGATCGGCATCATAGGCGAGTTAGGCCT 1241695 30 96.7 35 .................G............ ATCTGTAGGACGCCCCTCACCTCACTGGCAGTATG 1241760 30 90.0 36 ......A...T......T............ ATGTAAAGGTTTAGATAAGGTAATGCCATTTTTTTA 1241826 29 93.3 34 ....A...-..................... TGATTTGGACAAGGAAAAATATGCTGAACAGAAA 1241889 30 83.3 34 ......A...T....A.T..........T. ATAAGGCGCCACTGTAGCTACCGGATTGCTGTAA 1241953 30 83.3 33 .G..C.A..........T...........G TACCTTGCAAGCCATGAATCATCTTTAACTATC C [1241957] 1242017 30 93.3 28 ......A..........G............ GAAGATGAAATTTCCAAATTAGAGCGAA A [1242022] Deletion [1242075] 1242076 30 83.3 36 TA..C.A..A.................... GTCGATTATGTTGAATGGATAAAACGCGAGACTGTG 1242142 30 90.0 37 ......A...A......T............ AACGGTACTATTGGCGGAGCAGAGAAAAGAAAAGCTG A [1242158] 1242210 30 96.7 43 .............................A GACAGGAATTGAAAGCCAGTCGGCAAGCCCATATTTTCGTACA 1242283 30 76.7 0 TC.C..A.C.T......T............ | ========== ====== ====== ====== ============================== ======================================================================================================================================================================== ================== 108 30 93.0 38 GTTTGATTTGCACCATACAGGAATTGAAAC # Left flank : AAAAGCCTTGGCAGAAGCATTATTAGACTGGCGAATCACTACAAATCAGGCCAGAACTTTAGATATTCAAAGTACGCTGGCAATTTCAATAAGTGACAATGCAAATAAAATTGCTGCTGCCATTCGCTCTAAACTTGTTGTAGAAAGTGAGGAGCCAAAAGCAGTCCCAATCGTTGCAGAAAAATTACCGGGCATAGAAACGTTTGTTACCCTGGCAGGGGCTGGATATTTAGTCACAACAAATGAAACGTATGATGCACTTGATAAGGCCCAGAAGAGACTTACTGATTTGATGCTCGCGTTTGATTATGAAAATCAATGAGCGCATTAATGGACAATTAGCAAATCTTTTAATTTTCTATATTCCTCGATGTTGTTTACTTCTCCAAATATCTGAACTTTTAATAGCATCAAATAGCGAAACATAGGAAGTGGACGACAATCCAAATCCTCATTGGTTTACATTGGGAATTTAAACACTAAACAGGAAGCAGTTTGGC # Right flank : CGATTTGAAGCGTATTTTTAATCTTTTTCAAACAATTGTTACAATGAATTAAAACTGTCAAGCTTATTTTATTTTTTCCTTTAAAAAGAGAGCATAGAGCTCTAAAAAATATGCCAGCCCTATATAAATAAAACTGGCATAATTCTTATGAAATATTTACTTGTTTCTTATTGACCAACCGGGCCGTTTTTCCAATACTTGATATTTTTCCAACGTGTTTCAGATCGAGTACCTGAAATATTGTATACCCCGCATTTGAAATAATGGGTTGCATCGCCTCGGTCTGCGTAAGTCCCTTTTAAGGCATTGTTCAGGTAAACATATATCTTGCCATTGTCTGCATCGTGTTGCACATTTACATGTATCCATTTGTTATAAGCGTTTGTCATGAGTGTTTCATTATCGTACCGTTTAATGGTGCCGCTGCTGGCCGCATGAATTTTAAGCATGATAGCGGTGGCATTGGTGGCACCACCAAATACCTGCATAATGTCTGTGCC # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.65, 5:0, 6:0.25, 7:-0.27, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATTTGCACCATACAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [86-117] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //