Array 1 124567-126849 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVJ01000001.1 Candidatus Kryptonium thompsoni strain JGI-12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 124567 30 100.0 36 .............................. TAAATAATCAACTTCCCCACCAAAGACACAAAGAAC 124633 30 100.0 36 .............................. GCTCTCTCAAAATCTTGTTTAAATCTTCTCGTTCTT 124699 30 100.0 36 .............................. AATATGGTTATGTTACGGGTCCAACTTTATTTATTG 124765 30 100.0 37 .............................. ATATTCCCGGTTTGCCCACTTTAACCTCTCAAGGTCC 124832 30 100.0 37 .............................. TTCTTTTAAATAATGCCTCATTTCCCCCAAATTGCGA 124899 30 100.0 36 .............................. TATAATACCCCCACCACCACTCTCCATCAAACTTCC 124965 30 100.0 37 .............................. TCAAGTCCTTCAGATTCAAGATATAATGTGGAATTGT 125032 30 100.0 35 .............................. ATGTTTTTAAAAATCCTTCCGCTTTCGCTTTAAAT 125097 30 100.0 36 .............................. GTATGAATTTTTTCGGTAAGAATTTTCTCAGTAGAA 125163 30 100.0 36 .............................. CTTTTCATTTTGCATTTTCATTCTCCTTTTGATTTA 125229 30 100.0 36 .............................. AGTGGGGTCAATCAAAAGCCAAACATCTTCCTCATT 125295 30 100.0 36 .............................. CCATTTCAACCATCAGCATAATTCTTTCTGCAATCT 125361 30 100.0 36 .............................. TGGAAATAGGTTTTCTGAAACCCCTATTCCGAATAT 125427 30 100.0 36 .............................. TTTTTTTGATTTTTTTAAAAAATCGCAAAAACAACG 125493 30 100.0 36 .............................. ATGCTTTGGAATAAAAAATGCCCACTATCTTTACCG 125559 30 100.0 36 .............................. CAAATTTGGGTTTTAATCGCTCTTTCAAAAATTCTT 125625 30 100.0 36 .............................. AAGTTTTCAATTACAATTTTTCGGTTGCTCTCAAGT 125691 30 100.0 36 .............................. AAACAATTATCGCAAGTATAAGTTTTCTATATCCTT 125757 30 100.0 36 .............................. TTTTTGATTTTGCATTTTCATTCTCTTTTTTGATTT 125823 30 100.0 36 .............................. TCCTTATCACTTATGTAAGCAAGATAATCACATTTA 125889 30 100.0 36 .............................. ATATAGGCTTTGGGATAAGTTGTTTTTAAATAATTT 125955 30 100.0 37 .............................. CGTTTTTCTTTCCTTATCCAATCCGCTTCATTTTTGA 126022 30 100.0 36 .............................. ATTGTCCAATTTGCAGTAAGAGAGAAAAATTCCATA 126088 30 100.0 36 .............................. AAGTTTCAGCGTCGAAATACCCTGCAAGCGCGATTC 126154 30 100.0 36 .............................. ACCCTCTGGACAAGCGACATTCTGCAGGCATTTTGC 126220 30 100.0 36 .............................. ATTATTTTGTAGAGTATAGGTCTATTAGTTTTTCCT 126286 30 100.0 36 .............................. TTCTTCTTTTGTCTTAGTATAACTGGTTGGATCAGT 126352 30 100.0 36 .............................. AAGGTAGATATAAGCAAGATGTATTTTTTAGTTGCT 126418 30 100.0 37 .............................. ACTTATCAAATAAATAATAATTCTCACCATCAAAATA 126485 30 100.0 37 .............................. TTATAAAATAAAATTGAATTTTCCCCTGTTTGAATAA 126552 30 100.0 37 .............................. GAAATAAAAAAGATTCCCTTCGTATTCATACACTTTG 126619 30 100.0 37 .............................. TCTCATTTCGCAGGATCACATACAAAGGGTCAAAAAT 126686 30 100.0 36 .............................. GTTCATGAATATCGCGATCGTATCGATTGCGCTTTC 126752 30 100.0 36 .............................. TAGTTCAGAAACGCCATTTCCTCAACCAGCGTGTCA 126818 30 96.7 0 .............................T | TT [126841] ========== ====== ====== ====== ============================== ===================================== ================== 35 30 99.9 36 GTGAGCATCGAACCAGTGTGGAATTTAAAC # Left flank : ACATATAATGGGAGAGGAAAAATATGAAGGATTTAAAATTTGGTGGTAGGGGGGCTAGAAATGTATTACATAGTTGTTTATGACATAGCGGAAAAGAGGGTGAACAAAGTTTTAAAATTTATGCGAAAGTATTTGAATTGGGTGCAAAATTCGGTATTTGAAGGAGAATTAAGCGATGGACAATTTGAGGAAATGAAAGTAAAATTGAGAAAAATAATAAACTTGAATGAGGATTCGGTTTTAATTTATTCAATGGAGAAAAAATGGGTTGATAGGGAAGTTATAGGTGTGGAAAGAAGTGAGGTAAGTAGAATAATTTAGTCGCGGACAGAGTTTTGGGGCGTTAAATTTAGCGGTTAAATACTTAATATTTGAAAGTTTGAAAAAAATTAATCAGTTTTCTCTTAGTCGCGGACCGTATATTTTTGCATTTTGCTCCGCGACTTAATTTAGGTTGGAAAAATTTGATTTTCTGTGTAAAATTTTGTAGTTTTTGGAGA # Right flank : TCACTTTATCAGAAGGGAAGTATTTTTATGATCAAGACCAAGCGTGTTTATGAGGCCCCTGAACCTGATGACGGTAAGCGTTTCCTGGTGGAGAGATTATGGCCCATGGGTGTGAAGAAAGAAACTTTGCAAATTGACGCATGGTTGAAAGGAGTAGCTCCAAGCCACAGCTTGCGACTTTGGTATGGGCATGACCCAAAGAAATGGGAAGAATTTAAACGACGCTACTTTGCTGAGTTAGATGGCAAACCCGAGGCATGGCAACCCATCTTAACAGAGGCCCGCAAAGGAAATGTAACCCTTCTGTATAGTGCACGCGATACGGAACATAATAGTGCGGTAGCATTAAAGATTTACTTGGAGAATAAAAAATGATGGGATAACTTCGAAAAAGTTTTCAGAAACCTGCTATTGACTCTAAGCCCAATTTTCGTTAAATTTAAGATAAACATAGCGGAAAATAGTTAAGAAATTTAAACTAAAATTGAGGTTCCACTATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCATCGAACCAGTGTGGAATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 1940-1183 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVJ01000107.1 Candidatus Kryptonium thompsoni strain JGI-12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1939 29 100.0 38 ............................. GATTTAGACAGCTTTCAACAAGATTATTTTCATTTGCG 1872 29 100.0 37 ............................. CGGCTAATCGGGGATACATAGAAATACCAATACTCCG 1806 29 100.0 37 ............................. CTAGGTTAAGCGATAATTAATTTGAATCGTTGAAAAT 1740 29 100.0 36 ............................. CTGTGGTCGCAACTTAAATATCGCATTGGCAAACAA 1675 29 100.0 36 ............................. TTTGATTTAAACAGGGATAATGACACTGGCATTCTA 1610 29 100.0 37 ............................. TGGGAAATTTCGGTTAAAGCAAGATGGAATGGGCTGG 1544 29 100.0 37 ............................. GATACGACAACATCTTCAAGGTTGCGAGCGAGCTTCT 1478 29 100.0 38 ............................. AGTATTTCAATTCGTTCCTCCTTGCTTAAAGTAACACG 1411 29 100.0 39 ............................. TTCATTTTAGCCTCCATGATTTTTTTGTTTTTTTATTTG 1343 29 100.0 38 ............................. ATAATAAAGAAATCTGACAGTATCCATAGCAAAACTCG 1276 29 100.0 36 ............................. ATCTCTTCAACGCTCAATATTTTACCCTCTGGCGGG 1211 29 93.1 0 ........................A...T | ========== ====== ====== ====== ============================= ======================================= ================== 12 29 99.4 37 TTTGAATTGAACCTGTGAGGGATTGAAAC # Left flank : CTGATTATTATTCTGGGAAGCAACCTCCGGCGGATTGGCAGAATCCAAATCCTATAAAATTTTTGACTGTTGAGAAGACGCATTTTCAATTTTATTTGATTTCGCAGGATAGTTCTTTACTTCAGAAGTCGGAGGTGTTATTAAAGGAGGCGTTAGGGAAGTTTGGGATTGGGGCGAAGACATCTTTGGGGTATGGGATATTTGAGATTTAGGGGGAGATGCGTTAGGTGTTCAATTTTGTTTTGTGGGTTGAGGGGTTGTTTTATATTCGTTATTTCGTTTCCGAGAATCGCGTGAAGAAGTTAGCACATTGATTTTTGAATAATTTATTGATTTACAATCAAAAAGTCGCACTCTGACATAAACTAAGACATTTTGTCAGGGAGGTTGGCGGAAAAATTTGGGGTATGGGTTAACATTTAGGCTCTTGACTTTTGGTGGAAAATTTATTATATTATAGTGTCTGAATCTTGGTAGGTTTAAGTTTTATTTTATGGTGG # Right flank : GAAATTCTTGCTGTAAAATTATTTCAAAAAACACAAAATTCATTGCCTAAAAACTTATTTCACAGCAACTGTAAATGTTTTGCGTTAAGTTAAAATCATAGGAGAGGGGTTAAAATGTTAAGGAATTTATTTTTAGTTTTAATTTTTAATTCTTTAATTTTTTGTGAAAAGTTATTTTCACAGCTATCGTTTACAGGTGTTTCTGATCCTTGGATCAAGGGGAGGGTTTATCTTTTTGATGGGCATCAAAATTATGGGAGAAGAAGTTGGGCTTTGGCAGGTGGCTTAGGTAATTTAAATGTTAAGAGGGATAGGTATAATTTATTAGATTTAAGGTCTTTCGGGTTAAAAGATTCAGTTAGGGGAATTGGTAAAAGAGTAAGGGTTGGGGGAAGCGTCGGCATCATGGGTTTATTTCCCATCTTGCTTTTTCGCTCTGATATAAAATTTGGAGGGGTTCCTGTAACAAATTTTCAAGTAGAAATTGGGTTTAAAATCTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGAATTGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //