Array 1 155924-153980 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOXH010000002.1 Oxynema sp. CENA135 scaffold2_cov0_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 155923 36 100.0 36 .................................... ACCAGTTGGATCCCTTTGACAATTTGGGTCGTGGCG 155851 36 100.0 36 .................................... GAGATGGAAGTTGGGGCGGACACGTCATTTCTTCCA 155779 36 100.0 38 .................................... GGCAAAGTCGGTGAATTCTTCTCCGGCTGGGGTAAAAA 155705 36 100.0 38 .................................... CATAGACCCGCAGAGAGCAACCCACTTGAAGGTTTATT 155631 36 100.0 39 .................................... ATTGTTGGCAAGCTGCGTAGGGAAAATCTCACTTATTCT 155556 36 100.0 38 .................................... TTGGGAGAAACCATTCCGAGAGCGATAAATTCCTTGTA 155482 36 100.0 38 .................................... TCGTCTCGGTAGGCTTGCTTCGCTTTCGGATCGATCTT 155408 36 100.0 38 .................................... GATACTGGAATCGAAGCTAGATCAACTGCACTTGAGGC 155334 36 100.0 38 .................................... GATCGACTTTTAAGCTTGCCTCTCGACAGCTTTTCCTC 155260 36 100.0 41 .................................... CCGAGTAGGTAAAAATAGTGGCACCTCAAGGGTGCCGGTGT 155183 36 100.0 38 .................................... GAGGAGTCACCCCCACACCTCACCCAGAGAACCCCCAG 155109 36 100.0 36 .................................... AGAGTAACACCACTGAGATTGGCGCCATATAAATCT 155037 36 100.0 34 .................................... CTTCTCCGGCCAACATGATGAACTTGGTCGGAAA 154967 36 100.0 39 .................................... CGTCGGATCGCCCGCGCGACGGGGGTGACTTTTGTTGCC 154892 36 100.0 39 .................................... TGCCACCTCAAGGCAAAATCGTCGAGACTCGTGAATTGC 154817 36 100.0 39 .................................... TCTCAATTTACGTTGATTGGGTTGCTCGACTTCCACCTC 154742 36 100.0 38 .................................... GAACCAGTATTACGATCCCTTTAGCGGCCCTCCCCGAA 154668 36 100.0 32 .................................... AAGGGGCCTGTTTCTTCGATTGGAAAATCTCC 154600 36 100.0 38 .................................... ACGCTATCTCAGCTCGTCAGCCACGTCCTGCTTCGGCA 154526 36 100.0 39 .................................... GCAATCAGTTCCCGGACGAAATATCGTGTTTTGTCCCCG 154451 36 100.0 39 .................................... TCGTCGGATGCTCGCTTTTTCAAAGCGGGTGGGGTGTTG 154376 36 100.0 35 .................................... GACAGACAGGGCAATTCGCAATTTGCCTGAGCGCC 154305 36 100.0 38 .................................... GTGCTGACGCGAGTAGACGTCAATACGCAACAAGTCGA 154231 36 100.0 36 .................................... CGGAAGTCGGTCGAATGGATCGACTGCCTCGAAATC 154159 36 100.0 36 .................................... GAGGAGTACGCAATGGGCAATCCTATTCTCCCCTAT 154087 36 100.0 36 .................................... TTATGGGTTCAACTGTCGAAGGTGTTGATAAAAGTC 154015 36 86.1 0 .................T........G..C..AT.. | ========== ====== ====== ====== ==================================== ========================================= ================== 27 36 99.5 37 GTGCAATTCCTTCGATCGCCGTTAGGCGTTGAGCAC # Left flank : ATAAATCTCACCAAACTAAAGTCGAGCCGTTCGCACCTATTTTAGAGCCAACGGTAGACCCTCCACGGGAAGCCTGGACGACTTTGCCACCGTAATCGTTATTGTCCGGTGGCGAGATCGCCTCTGCTCGTCGGCGTCTCTCGATGTTCGTTGGCGATCGGTTAACCTAAGTCTATGCGTGATTCCGATAGAAATACCGAATCCATCGATCGAAGGGGGTCACCGGACTCGAACAAGAACGGCGATCGGATTTTGCAAGCACTATTCGGTGTAGCAATCAATCGGTGGTCAAAAAGTGTTGGAATCCTGAGTAGCTCGGCATTTGAGGATATTAGGAGACTCGCCCGATACTTGTAATTTTTGAATCGTAGTCTGGGTAAGGGTTTTGGCTGTCGGAGTTTTTAAGGTTAAGTGTTACATACCAAATTTTCGCGTATTTGCACGAGGTGCTTGTAAAATAGTCTGCGGATGGGGAGTCAGTCTGGGATTCCGACCCCGCT # Right flank : TAAGAATATCCTGGAAAATTTTTTTAACTCTAACCCAGCACGATCCCCCGTCCCTGGAATAGGCGACGATCGCCCCGTGTCAAGTAAATGTTGCATTTTTTTACAAAGTCTGTTACATTTATTTACAAAGCAACCCGACGACGACCCCCTCAAGGAATCGTCCGGAGGGGAGCCGTCGAAGTTGCTAAATAACAAAATCAATTAAAAAAGCACGATATTTTAGATTTTTCTCTCTCTCTTAAGTCAAGACCTCGATTCGCACTAGCTTGGGCTATAAGCTAGTGCTTTTTATTGGGCTTTGATTGGGCTTTGGATGGGGCGATCGCCGCCACGGCGGGGGTTCAGGACTGCTGCATCGCTTCTCGGTCGGGCGCCGCCGCCGCACCTTTGCGCTTCAAATAAATCGTGCGGATATCGATAGGCAGCAAATTTTCCAAACGGTGATAGCCCTCGTCGAGCAAAGCGCGCACGTCAGCCGGGGAGAGGGTTTCGCCTTCCGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCAATTCCTTCGATCGCCGTTAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 1050169-1047684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOXH010000002.1 Oxynema sp. CENA135 scaffold2_cov0_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1050168 37 100.0 35 ..................................... TACTGTGTACCCGTGGGTAACCTCAACCAATACGG 1050096 37 100.0 36 ..................................... TTAAGCATTTTTCAGTACCTGGAACTAAAAGAGCGA 1050023 37 100.0 44 ..................................... AGACGGCGGAAAATTCGCTACCGGCGGGGTGGTCGATTATTAAG 1049942 37 100.0 35 ..................................... TGAATTTGCCTCTCAGAATTTCTTCATTATTTCGC 1049870 37 100.0 34 ..................................... TAGATTTCCAACTTCCAGCTCCAGACTTTCATTT 1049799 37 100.0 42 ..................................... ACTGAATGGGATGGCTCCAAGGCTGGACTAGCGGAATTGATT 1049720 37 100.0 34 ..................................... ATTTAGTTGACTTAGTCCGGGTTGAAATTTTGAA 1049649 37 100.0 35 ..................................... AGGTGACAGGAAATTTTCGGAACGGTGATCCTAAA 1049577 37 100.0 39 ..................................... TGTGTAAGGGCGTGGTGTGCTTGGATGCGAACGCCTCCC 1049501 37 100.0 38 ..................................... CGAGAAAATGGGGAGGATATCACCCTCCCCATCGGAAT 1049426 37 100.0 34 ..................................... CCGGATTTGCCCAAGCGATGGGCAGCCAATTATA 1049355 37 100.0 36 ..................................... AATCCAATCATCTGGAGTACTCCAAGAAGACTGAAC 1049282 37 100.0 34 ..................................... TTTGGCGAAAAACTTGCTTTCTGCCTTCGCTTCC 1049211 37 100.0 36 ..................................... GGCGTAAGTGAGAACGGCACCGCTCAAGTCGGCGCA 1049138 37 100.0 32 ..................................... AATCCAAATTGATGATTACTGCCTGGTCGCGG 1049069 37 100.0 37 ..................................... CGGGATAGGTTGGTACCGACCAGGTTGGTGCCGATAA 1048995 37 100.0 37 ..................................... ATACGGGATCCAATCTCAACCCGGGATCCAAATCACC 1048921 37 100.0 37 ..................................... CTCATGCTATACTGTGAATGCGTCCCGCCTGAGAAGA 1048847 37 100.0 38 ..................................... GGCGCCGCTTAAATTGGCGCCACTCAGAGTGGTACCGC 1048772 37 100.0 34 ..................................... TCCAACTTTTCGCTGAAAGACTTGTGCCTGCCTG 1048701 37 100.0 39 ..................................... GCTAAGGTCGGCGCCCTTTAGGTAGGCGCCCTCTAGTTT 1048625 37 100.0 42 ..................................... GAGGTGTCAGTCGCCGGGATCGGAGAGGGTCATCCCCCCTCC 1048546 37 100.0 37 ..................................... GATGCCGCAAGGCGTTCTATAGCGAGAGACTGCAAAT 1048472 37 100.0 35 ..................................... GGTGCGGGATAGGTTGGCGCCTGTCAGGTCTGCGC 1048400 37 100.0 41 ..................................... GGCGAAAGCGGAAAAAGGGGAAAGGCTAGCCATTGTTAAAA 1048322 37 100.0 43 ..................................... GCTAAGGACATCGGTGTATTGACAAATGTAGCTACAAAACTAC 1048242 37 100.0 39 ..................................... AAGGACTCCGAAGAGTCGAAATCCACCGATCGGCGTAAA 1048166 37 100.0 40 ..................................... TACTCCATTAAGGAGTTTGCCTCGTAAGTCGGCACCGCTA 1048089 37 100.0 34 ..................................... TAGTTTTATATTAGGTACCGGAGCCAGAGTAAGG 1048018 37 100.0 38 ..................................... ACACTGATCGGGTCCATGCAGAAATTCCTCACTATCAG 1047943 37 100.0 37 ..................................... ATTCGCTTGAAAAACGGTAAAATCACCCAAACTCCAG 1047869 37 100.0 37 ..................................... GAAGCCAATTGCCATCCCTACGAGGAATTGGCTCCGC 1047795 37 100.0 38 ..................................... GTTTAAATGTAACCGCTTAGAGCTCTCCTCATCTGTGA 1047720 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 34 37 100.0 37 CTCGAAATTCCCTAAAATCCCTTTGAGGGATTGAAAC # Left flank : GAACGTGCTGTAGCAGAGATGGTTTTGCATCGTGGACAAGAAAACGTAGTAACCCAGGGACTCTGGGGAATGGAAAGCGCCTGTCAAGTCGGTCTGTCGGGGGTCTATGACCTAAAATAAGTGGCGTGAAATAAGTGGCGTGGGGCCCGAATACCCAATCGCGTTAGCGTAGCGGTGCATAGCACGGTTGGGAAGCCCGCGCTGTAATCTTTGATTCAGCGTCGGGAGGATGTCACGGAAAGTTGCGATTTGCGCGAGAGGGTAGTTGTATGAGGAAGGCACGACTGAAAATGGACTGGATGGCTGATGGGGTTTGGGTTTCGGGGCTTTTACGGCTTGGGGGGTCTCGCGCAAATGCTGTAATACTGATGGGGTCTGGGTTTCGGGGTTTTCGGTTTGGGGCGGGGGTTGTGCATTTTGGGCGATCGGTGTTATTCTTGGGAGGTCTCGCGCAAATGCACCTTGAAAACTGCATACTGTCAAGGTTCTAGAAGGGGGGC # Right flank : TGCCATCAACGTATTTTTGGTATCGAGAATTGATTTGTAACCGCGATCGATCCGGATCGCGAAGCGAATGGATCGCTCAATTTAAAACTGTTTTCCCGGCGACCTTCCCGGTGTTGTCGATTTCGTAAACTAGAGGCACTCCCGTTTTCAGTTCCAACCCGGGGACTTCTTCGGTGTCGAGACCGTCGAGTTCCATGACGATCGATCGCAGGGAATTGCCGTGGGCGGACACTAACACGTTATCCCCCTGTCTCAGGTGCGTCAAAATGCGATCGCGGAAGAAGGGTAGGGTACGGCGGGCCGTGTCTTCCAAGCTTTCTCCCCCAGGCGGTCGGGTCGCAAACGATCGCCGCCAGCGATGCACCTGTTGTTCGCCGACTTTCTCGGCCATTTTTGCCTTATTGTACCCTTGCAAATCGCCATAGTAGCGCTCGTCGAGGGCCTGAGCGAGAAAAATCGGGATTTCTTCGTCCCGATGCCCTTCGTATTTATCCCAGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGAAATTCCCTAAAATCCCTTTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 104943-109400 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOXH010000003.1 Oxynema sp. CENA135 scaffold3_cov0_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 104943 37 100.0 38 ..................................... CTTTGAGGGCCGGCGTGGCGTCACGCTTCTCTCCAGCT 105018 37 100.0 36 ..................................... CCGAGGCTTCCGCCATAAGCGCGGAAGCTCTCGGAA 105091 37 100.0 35 ..................................... CCGAAAATTTCCTGTCACCTGACTAGCGGGAACGG 105163 37 100.0 33 ..................................... GTGGATCTTGCTGAAGATCAGGGCTAGCGATCC 105233 37 100.0 34 ..................................... CAGATCTGGAGCCAAGGAAGCTAGGAACTCTTTT 105304 37 100.0 41 ..................................... GCTGCCATCTATCCCAGCCTCCACAATTTTTTTTACTTTGG 105382 37 100.0 35 ..................................... TGGGGCTTTTTTGTGGAAAGTTTTCACAATCTAAA 105454 37 100.0 36 ..................................... CCCGAACTTATTTTTGGCGCTACCGCTCCAAAACCT 105527 37 100.0 37 ..................................... TCGGTGATCGAGCAGCCTTCCGCAAACTCCCTGCAAG 105601 37 100.0 34 ..................................... GGGACTCTTAAGGAGTTCCCCGCATCCATCACCC 105672 37 100.0 38 ..................................... GTTTGTCCAGGGCGCCGAAATTCTGGTTTATCAAAATT 105747 37 100.0 37 ..................................... CACACGACCTTTTGCGGGCAGGCCGCAGAAAATTCCC 105821 37 100.0 34 ..................................... GTAGCCCAACGGTGTAGCTTGCCGCGCATAATGT 105892 37 100.0 36 ..................................... TGGCGGCAGGGAGAGCCATTTTCGCCCATCCAAATT 105965 37 100.0 35 ..................................... GAATCCTAGCGCCATTCCCACGAGGAACCGATCGC 106037 37 100.0 35 ..................................... ACCTAAAAAGTACGGAAAGCGTACTCGCTTTGTAC 106109 37 100.0 36 ..................................... AATCCTTCAGCAATTCTCAAGTGGCGGGCAGGTTGA 106182 37 100.0 39 ..................................... CCCCCTCCAACCTTCCCGAGGGATCTGCAGGTATCGATG 106258 37 100.0 39 ..................................... TGCTTGCTGAGATCCGAGCCAGAGATCTAATTGCCAGAT 106334 37 100.0 34 ..................................... TCTACGTAATAGTACGGGTCATACTCCCCTACTG 106405 37 100.0 46 ..................................... CGGGCTTCCCCAAATTAGCCCGCGCCGATTTCGATCGGCCTCTTGC 106488 37 100.0 43 ..................................... TTCAAGCTGATGCTGGAATAGAACGGGGAGACCTTCCTCGAAA 106568 37 100.0 35 ..................................... TATCGGCTATCGGCCAACCCTTCGGCGATCGCCTC 106640 37 100.0 38 ..................................... AAGCGGGCAGAAACCCCTTCGGGGGTGCTATATGTAAC 106715 37 100.0 38 ..................................... GAGTACGTACCACCCATAGGAAGCGACAATCGCTTCTA 106790 37 100.0 43 ..................................... ATTGATGATTTGTATTTGTATGGCGGCGTACCCTTCTTCCCCC 106870 37 100.0 37 ..................................... CGGACTCGAACTTTTCGTACTCGATCGCCCACTCCTC 106944 37 100.0 37 ..................................... CTCCTGTTTGGTGCAAACATATCCCGAGACAGAATCA 107018 37 100.0 34 ..................................... CTTGAAGAATTCCGTAGTAATCCATTAGTGTTGT 107089 37 100.0 39 ..................................... GGGCTGTAGCGGACGGATCGCCGACATTGGCCTCGGTAG 107165 37 100.0 38 ..................................... CACTCGACCGACTGGAAGATTCGACGAGAAGCGCTCAA 107240 37 100.0 36 ..................................... AGCGCCCTCAAGATCGGCGCCCTCTAGGGAGCAGCC 107313 37 100.0 36 ..................................... TCGATCTTGATTCATTACTTGCTGCCGTCGAATCTG 107386 37 100.0 42 ..................................... TAAGGAGGAATCTTCTTTTCTAAAAAGAGGAACTTATCTGGA 107465 37 100.0 34 ..................................... ACCTCACAAGGGATTTTCACCACAGACTCTTTTA 107536 37 100.0 34 ..................................... AAACCGACGGCGCTCGATTGGTTGATGGGCGAAA 107607 37 100.0 37 ..................................... GGCGCCGCTAATATCAGCGCCTGTGAGGTCGGCCTCG 107681 37 100.0 35 ..................................... CGTCATCCCCCGCCCGAAACACTGCCAGCCACCCT 107753 37 100.0 38 ..................................... GCTTACCTCCTGGGGATTTTTGTTGGTCGCTGCGACCA 107828 37 100.0 36 ..................................... CGGCAGGTTTAGGATTTTGTTGTAGCATTCGAGGCC 107901 37 100.0 36 ..................................... GAGCAGAATAAGCGCCTCCTGCCCGGCGAACTGTTC 107974 37 100.0 39 ..................................... AGGTTAGTATCCGACCCGCACTCTTGGGGTAGGAACCAC 108050 37 100.0 36 ..................................... CCGGGACTTCGGCAACTATGCCGGGACCAGGGGCTT 108123 37 100.0 35 ..................................... CCATACGGGACAAAGATAACCTTGCTGTGAGGAAA 108195 37 100.0 40 ..................................... ACGCCGGGTATTCGACGCACTCGACCCGAAGGACTTTCAT 108272 37 100.0 34 ..................................... AACATTTTACGAAGCCCTCACATACGACTCGGTA 108343 37 100.0 36 ..................................... CTTCAAGGACAGCAAAACGCTCGGGGGAGCGTCGAA 108416 37 100.0 33 ..................................... CTGGTACGGCGGGGGTCGCGCCAGCGACTTACA 108486 37 100.0 34 ..................................... AGGGAACGATGCGTATAAGGCGCAGCAAGATGTA 108557 37 100.0 32 ..................................... CGCACAAGCGCAACTCGCTATCTCACAACAGC 108626 37 100.0 34 ..................................... CGACAAATCGGCTCACTTCGTTTATATCCATAAG 108697 37 100.0 37 ..................................... GGCAGCTTTTCTGACTACCGAATCCCACCGAACTAAA 108771 37 100.0 37 ..................................... TTGTAACCCAGTGAGACCCCCTTTTGGTTGGAGGCGA 108845 37 100.0 34 ..................................... AGGCTGGTTTTGATCATTGCGCTTAGGAGCGCAA 108916 37 100.0 42 ..................................... GAAGAGATCAACCTTTACAAGGGAAATAAATTACTTCCACCC 108995 37 100.0 36 ..................................... TACAGTCTTTTTGGGGTACGACATGGCTAAAAATCC 109068 37 100.0 33 ..................................... ACTCTGTAAGTTCGTGACATGATATTTTCTTTT 109138 37 100.0 39 ..................................... AAAATCTTGGCGCGATCTTTCAACTTCTCGACCCATTGC 109214 37 100.0 41 ..................................... GTTGACGAGCTGAGGTAGCGTCATTCCCTGAGTCACGGAGC 109292 37 100.0 35 ..................................... GTATAGATACTCGATATCCGACCTATTAAACGAAC 109364 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 61 37 100.0 37 CTCGAAATTCCCTAAAATCCCTTTGAGGGATTGAAAC # Left flank : AGCGCCGGACGAAGATTCATAAGATTCTCAAGTCTTATGGGGAGTGGATGCAGTTCAGTGTCTTTGAGTGTGATTTAACGGAGATGCAGTATGCCCGGTTACGGGGACGACTGGAGAGGTTGATTCAGCCGGAGACGGACAATATCCTCTTCTATTTTCTCCGGGGGAAGCATCAGGGGACAGTCGAACGGATTGGCTGTCCGCCACCGATGGATACGACGGTCTTCTTTTGTTAAGGAATGTTGCGATTTGCGCGAGAGGGTAGTTGTATGAACGAGGCACGACTGAAAATGGGCGGGATGGCTGATGGAGTCGCGGTTTCGGGTATTTTACGGCTTGGGGGGTCTCGCGCAAACTCTGTAATACTTATGGAGTCTGGGTTTCGGGGTTTTCGGTTTGGGGTGGGGGTTGTGCGTTTTGGGCGATCGGTGTTATTCTTGGGAGGTCTCGCGCAAATGCACCTTGAAAACTGCATACTGTCAAGGTTCTAGAAGGGGGGC # Right flank : CGAAAAATGACTAATCCTCGAAGATTCAAAAAAAAAGCCTCAAGGTCTGAAACGGTTGGAGAGTGATGAAATTGCCGTCGTCAAAGGACAAGGAAATCATTACGCAGTGTTCGTAAATCTGGATACTGGAAATTTAATTGGTTTGCTAAAAAAACTCACATAAAAAGAAATTACAGACCATCTAAACCCTGGGTTGAAGAGGTTTTGAGTCAGATAGAAAAGTCAGTATAGACCTCTGAAAGCCCGATCGAGCACAAGGCTTATGGGTTTCCTAATTGCTGCAATTTTGAACTTAGGAGTCAGCTTTCTATGATTTTTTCAGATTGATTTTGCATATTAACTTCGGAAGAGCCATTTTGGGTTGTATTTTGATGGTTTTTCCGATCGATTTATCGAATAAAATCCCCTTGTCCGATCGCCTGATAGACTTCGCGAATGGGATCGTAATCGCTATCTTGAGTGGGGACGAGTTGGGAACCGCGATATTTACTCGTACTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGAAATTCCCTAAAATCCCTTTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 247019-248531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOXH010000003.1 Oxynema sp. CENA135 scaffold3_cov0_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 247019 37 100.0 36 ..................................... CCATATTAGATGGTGGAGTTCGTAAGTAAGGCGTAA 247092 37 100.0 38 ..................................... TTAAGTAATTTGAACATGATGTTCTCCCCCTAATCAAT 247167 37 100.0 36 ..................................... TTAAAGCTCTTAAATCATGGATTCAATCTCAGTCAT 247240 37 100.0 35 ..................................... CAGTCAAGTCCGCACTGAGGGATGGAATTCGGGCT 247312 37 100.0 30 ..................................... AAGTCGATATCCGGCAGCATCGAAAGAAGG 247379 37 97.3 34 ....................................G CGAGGCAATTCTGGCGATCCTCGTGTCGAGAGAT 247450 37 100.0 37 ..................................... TTTGAGCAGCTCGTCAGCAACCTCCAATTGACTGCAA 247524 37 100.0 37 ..................................... GATCGCGCTTACGCCATGTCTTTTGCTCGATTTCTGT 247598 37 100.0 41 ..................................... CGTCGTCGATTTCGGCAAAAAGATTGCCTCGGGTAAGAAGA 247676 37 100.0 40 ..................................... GAAAGAAGTACTTGGACTTCCCCGCATTCCCAAGGGAGAT 247753 37 100.0 41 ..................................... AAGAAAATTACGAAGTTAGAAGAGTATTTCAAGATCGTCGA 247831 37 100.0 35 ..................................... GTACAACGACTTCGTGATCGAAGCGATTGCGGAAA 247903 37 100.0 37 ..................................... GAGAAAAAGGACAGAGATGTGGAGTATTACACCCAAA 247977 37 100.0 34 ..................................... GCACCGCCAAATCGTGGATTTATTCCGCAAAATT 248048 37 100.0 35 ..................................... TGAGGGACATGTGCAATATCGCATCGGGGGGTAAA 248120 37 100.0 39 ..................................... GTACCAACTTTGACGGCACATTTCTTGAAGGGCTGGGTT 248196 37 100.0 41 ..................................... AAATTAAAGACATATCCTATTACCAGAAACATCCCTTACTA 248274 37 100.0 36 ..................................... CCACAAAACCCTCTCTCTCGACGAAATTGTCGATAT 248347 37 100.0 38 ..................................... TTCGACGTTGTTGGCGGTGACAACGATAAATACCGGGG 248422 37 100.0 37 ..................................... AAAACTCAATCAATATGGAAGCAATCGATATTTTTGC 248496 36 78.4 0 ......................GG.CGT...-...AA | ========== ====== ====== ====== ===================================== ========================================= ================== 21 37 98.8 37 GTTTCAGCACCTTTTCCTTCTAATGAAGGTCGATCGC # Left flank : ATTGAGTTCTCAAAGGTTTTAAAAACCGGACACCCTGGAAGGGTGCGGCTATACGAACAAAGCCTGCCTTCGCAGGCTAAAGGCAGCATCAATCATGTGTTGTAGTCGTACTGCATCAGCGTTCACCATAAATCACCTCAGCTTCAGAAACCACGCGATCGCGAAAATAGCGACTGAGGTCTTGGGGAGTATTCAAATCCACAGTCCGTCCGAGTAAGTTGCTGAGACGGTCTTGGATGTCGATGAAACCAAAACCCGGTGTTTTTCCCGGTTGGAATTCAACCAGAATATCGATATCGCTATCCGGACGAAAATCATCACGCAGAATCGAACCGAAAAGGGCGAGTTTGCGGATATGGTAATCCTGGCAAATTTGAGCGATCGCCGCTTGAGGAATTTGAATTTTAGACTGCCTGGAGATGATGGTCATGCTGTATTGTCTGTAAGATTAAGAAAGCTGCTGCTTTTTTACCTTCTTTTATTTTATTCATCAACAGGAA # Right flank : ATTATGTAGGTTGACAAAAGTGACCAAATGTGGAGGAAAGCGCCTGCGGACATTTAAGCCAGCCAAATCACGGATGCAGCCAGGTAAATGCCACCCAGGAAGTTCACCGAGCGCTTGTCATAACGAGTGGCAATCCCTCGATACTGTTTGAGCTTGGCAAAGAAGTTTTCCACCAGATGTCGGGTTTGATACAAGAATCGATCGTAATCGTGGGCTTGTTTTCGATTCTTTTTCGAGGGAATGACGACTTCAATCCCTCGCTCGTGCAACGGTTGTCTGACTCGTTCGTCGGCATCGTAAGCTTTATCCGCTAGCAGTGCCTGGACTTCCACTGATGGTAGCAACCGCTCGGCACCGACTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGCACCTTTTCCTTCTAATGAAGGTCGATCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 255092-253314 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOXH010000003.1 Oxynema sp. CENA135 scaffold3_cov0_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 255091 35 100.0 42 ................................... ACTTAATTTCCGCCCCGCTCAAATTTTTGGGGGTGGAAGCCG 255014 35 100.0 34 ................................... AAGTAGTCCATGGAACTTTTTGTTGGAAGGCTAT 254945 35 100.0 43 ................................... TGTCGACTGGGTCTTTTCCAGACCCGCCGCATTCCGGGCAAAA 254867 35 100.0 35 ................................... CCATGGCTACTCCGGTTGTTCGTATAGCCTGCAGA 254797 35 100.0 40 ................................... TCCTATTTTTTCCACCAACCAATTAGCGGTTGGGAAAATC 254722 35 100.0 35 ................................... TCGCCCTCAGGGCAAGGCTGCTCCTCAGAAGCCTG 254652 35 100.0 39 ................................... CCTTCCACCCCGTTTTGGGGTAGCCATAAAAAGTAAAAA 254578 35 100.0 38 ................................... ACTTTACCAAATATGTTTTTTCTGCAGAAAAATCAAAA 254505 35 100.0 37 ................................... ATGCGGTTTGGGCCTCTCGGCCCTTCTTGCCCTCTCG 254433 35 100.0 39 ................................... TGGGGAATTGTGGGGGTAACTTCTCTCGACAGAGAACTT 254359 35 100.0 39 ................................... TTGAAGCTCGTGGTATCGGAACCCTTGGAATGTCAAAAA 254285 35 100.0 37 ................................... TCGTTTCCATGCCGTTTCGCCTCCTTGTCGTTGTCAT 254213 35 100.0 38 ................................... TTCCTCACAATGAGGGGGCCAGCCCGGTTGGACTGGAT 254140 35 100.0 37 ................................... TTTGCCTGCAATTTGCAGGCATTTCTAATAAGATATT 254068 35 100.0 39 ................................... ATAATGTAAGATATAGGAAAGATAGACAAGTCATCAATC 253994 35 100.0 37 ................................... GAGAGCTTTCGCCCTCAGGGCAACCTGGCTGCTCCTC 253922 35 100.0 35 ................................... TTCTAAAGTTCCCATTAATTCGACTCCGATAACAC 253852 35 100.0 37 ................................... GGAAGGATACCCATAGGAAGTGGCTGCAGAGTTCCGT 253780 35 100.0 42 ................................... AGTACAGGTTTCGATCTCGGGCGACAATGGCGATGTAATCAT 253703 35 100.0 36 ................................... GAGGCACGGACCCCGTAGGCAAGATTCGTCAGCCAT 253632 35 100.0 36 ................................... TGCTATTTGGGCCTCTCAGCCCTATAGCCCTGCCTC 253561 35 100.0 38 ................................... TTGCTGGGGCGGAGCCAGTTGACAGCTCTAAGATGATA 253488 35 100.0 35 ................................... CCTGGTCGATAGTCCGTGATTACATCACGACTGTC 253418 35 100.0 35 ................................... TCGAAAATTCGAACTCCTGCTTCCAAAACTGACGT 253348 35 94.3 0 ........................A.........G | ========== ====== ====== ====== =================================== =========================================== ================== 25 35 99.8 38 GTTTGACCCTCTTTGAAGGGAAAAGGTGCTGAAAC # Left flank : GATCGATGTTCGTGGTAAAATAGACAAGACCATGGTGACGGGATTACTCAATCAGTTGGGAAAGTACGATCCGCAGTTTCTCGAAGGTTTGGTACTCGAAGCGATCGCTGAAGAAGGGAACTCGTTACCCCTAGCCAATTGGCAGGCGTTGGTCGTAGCGATCGCCCACAATCAAGGGAAGTTTTCGCCATTACTCGATCGCGTCATTGACGATCCCCAGATTCCCCTAGAAGTTAAACATCGTATTTACCAAATCCGCGATCTCTAAATTAGTTATACTTATTTATTGATGGCGATCGATAAGCATCTGAGGGGGTTAGGCGATCGTGGAAACGTAGATACTTGGGTTGACCCCCTCAGATCGTCCTCTACCAGAAGCATTGCGCTGACGATTTTTCGTGATTTGAGCCGATAAGGAGCCAGTTGTTGCTACAAAAACTTGACCCCCTCAGATCCATGGGTGTAAAATCAGCTTACTGCTTGAGTTTAAAACCTCAAGG # Right flank : AACAGTGGGAAGAAGAACTCATATTCATCTTCCTTCAAAGCATATACGAACGCAGATCCTCGGTTGCAATGCTGGAACTGTTGCATTTAACCGAGTCTATGACGGCCATTTATTTGACTCAACCCGGTTCCCTACTCGACGCCAAACGTGGAGTCTTTGAACTGTGGCACGACGATCGCCGCCAACGGCGTATCCCCGCCAAACTGACCAGCCAGATCCTGGTGTTTGAAGACAGTCAACTGTCTAAAACAGCGATCGCCCTAGCCATTTCCTTTCGCTTACCCGTCTTATTTCTCGATCGCCACCATCGCCACCTGGGACGCCTTCACCTCAACACTAATAGTGGTTCCCAACAGCGATCGCTACGTGAAACGTCCCATCCCGACGATCGCCGCGATCTCGCCGAACGCCTTGTCAGTGCGATCTTGAACAGTCGCCAAAACTTGTTAAATACCCTCGATGGCGGGATTTGTCCCACCGTCGAATTGACCCGAGGGACG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACCCTCTTTGAAGGGAAAAGGTGCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 261851-265292 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOXH010000003.1 Oxynema sp. CENA135 scaffold3_cov0_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 261851 35 100.0 34 ................................... GTTTGGGCCTCTTCTGGCCCCTTTCCTTCATCGG 261920 35 100.0 38 ................................... GTGACCTGGACCAGAGTCAGAGAGGATTTTCACCTCAT 261993 35 100.0 38 ................................... TCTGGCCGGCAAAAACTACAGAAACACTAAAGACAAGC 262066 35 100.0 37 ................................... GTAAATATCCCCCCCCACCTCTATAACAAAACTGTAA 262138 35 100.0 32 ................................... TGTTAGAATAGCATAGCCACTTGCTGCATAGA 262205 35 100.0 39 ................................... TTCCATCACCATCAGTGTCTCGGAGTTCCCACTCCACAC 262279 35 100.0 43 ................................... AAGACCAACAATACGGTCCATTGAGTTGGCAGGAAACACGATT 262357 35 100.0 40 ................................... AAGATTCGTAATCCATTCGCGGCGAGGGATATCGCAGCGA 262432 35 100.0 35 ................................... CTGACCGTATTTGTCGTTGGGTCAAAACTTCCAGT 262502 35 100.0 37 ................................... TCCAAAGGTGGCGGTACCTGGTTGAGTACTAGCACCA 262574 35 100.0 36 ................................... TTGCCGTTTCCACCGATGACAAGATCACTCCCTTTG 262645 35 100.0 36 ................................... CGTGGGTTGCCATCCCACCAGTAGTTGGGAAAACGT 262716 35 100.0 37 ................................... CGATGAGCATGTCGTTGCCTTTGTCACCATAGCCGAA 262788 35 100.0 35 ................................... CGGGGAAATTTTGCTTTCTCTTCCAGTTGCTGAGA 262858 35 100.0 40 ................................... ACTTCGGCATATCCGATATAGGATATGGAGACAAGGGCAA 262933 35 100.0 34 ................................... CGGGGCTTCCACCGACCATCTAGGTCGGTGACTC 263002 35 100.0 35 ................................... GTTTGTACAAATGTTCCTGGGATGAGCTCTAAAGA 263072 35 100.0 36 ................................... AACAAAAAGTAAGAATTCCCCTGGCCCAAAAGTGAT 263143 35 100.0 35 ................................... AGAGAGTTCCCATTCCCGTCTAAGACAGGGGTACT 263213 35 100.0 38 ................................... TTTCCGCTAGCAGCATAGACATTTAACTGCCCAGATTG 263286 35 100.0 35 ................................... CTGGGCAAAGATCGCTGGTTACGACAGCACCAAAG 263356 35 100.0 37 ................................... CTGGCAACATCAGTGATTATGAACTCACCAGTGGAAG 263428 35 100.0 40 ................................... GAATGTAAGGTATAACAATGATAAACAGACCAGCAATCGT 263503 35 100.0 36 ................................... GCATTGAGCGTGGACGGGGTTACCGTCAGCCCAACT 263574 35 100.0 37 ................................... GAGCCATATCTCCACCAACGATACGCCGAGTAGTGCC 263646 35 100.0 41 ................................... CTCATTTTTGCCACCGCGACCGAAGTCGTTACCATCACCTA 263722 35 100.0 37 ................................... TTTTTACCACCGCGGAGGTAGTCATTTCCAGACAGTC 263794 35 100.0 41 ................................... TTCTAACTTATTTTGGGCCTCTGGACCCGATAACCCCTCTC 263870 35 100.0 35 ................................... AATATAGTTGCCGGTCAGGGGTAGCAACCCCTCTC 263940 35 100.0 39 ................................... GCGACTTGCACGTGGTAGACATCTATTACGACATCACCT 264014 35 100.0 37 ................................... GAGTCGGGAAGTATTTCCGACCGCCACCGAACACTTG 264086 35 100.0 37 ................................... GGGAAGGACCTGATGGACCTTCGAACGTGGAAAAACG 264158 35 100.0 40 ................................... GTATCACTGCGTTGGTTCATAACAAAACCTGATGCATTTT 264233 35 100.0 42 ................................... GTGGTCTTTGTTTCCCTTACGACGAGGATAGCTCCGATTGGA 264310 35 100.0 40 ................................... TTTCCCACTCTTGTACCCCCGGTTTTTTGTAATAATCACC 264385 35 100.0 38 ................................... AGTTGAGGGCTTTCGCCCTCGGGACAGGTTGGCTTCTG 264458 35 100.0 37 ................................... AAGCAAGCCATCAATCGTATTAGAAGATGAAAATCTC 264530 35 100.0 38 ................................... CATACCCACACCCACTCTTTTTTGGACTTATTACAGTT 264603 35 100.0 38 ................................... TATCTTGGGCAACAATATTTAAATTGCCGCCTTCCAGG 264676 35 100.0 38 ................................... TATCTTGGGCAACAATATTTAAATTGCCGCCTTCCAGG 264749 35 100.0 39 ................................... GATCCAGGTAAGAAAAACCCAATCCCTACAGAAGCTGGC 264823 35 100.0 39 ................................... CAACAAAATTATCCCCTGTCCAGACTAGGACGGGGAAGC 264897 35 100.0 35 ................................... AGTAACTGGGTCTCAGTCAGTAGATTCCGTTGATC 264967 35 100.0 37 ................................... ACTTCAGACTGTGCCGCATAGATGTTTAAAACACCAG 265039 35 100.0 40 ................................... GAAAGACATTTTCCTGCCCAAGGGACACCTGGGAAACCTT 265114 35 100.0 37 ................................... GGTTGGGGACATCAACTGCCCCGCCGCCAACAATGAT 265186 35 100.0 37 ................................... TCTTTGCCGCCGCGGAGGAAATCAGACCCTTCGTTGC 265258 35 97.1 0 ........................A.......... | ========== ====== ====== ====== =================================== =========================================== ================== 48 35 99.9 38 GTTTGACCCTCTTTGAAGGGAAAAGGTGCTGAAAC # Left flank : GCAAAGCACTGTTTTTGGAGATCGCACGACAACCGGGAATCACTACAGCGCAACTGTGTGCTTATAGTTGTGCTAGAGGAGGTTCACTCCAGCGCATCAATCATCACTTAGCAGGCTTGATTGATGAGGGGTTTATTTGTACCTCTTTTCGCGATCGACGCGGTAAATCCCATTATCAAATTACCAAAAGTAAGGGGAAACGAATGTTAAAATATTTGCAGGCCGCGAGGCCAATCAACTCCCACCTAATTGATAACCCGGTTCAATGATTAGTTAGGTTTATCTCTAAAATCTAATCGATAAGCATCTGAGGGGGTTAGGCGATCGTGGAAACGCTGATTCTTTGGTTGACCCCCTCAGATTGTCCTCTACCAGGAGCATTGCGCTGACGATTTTTCGTGACTTCACCCGATAAGGAGCCAGTTGTTGCTACAAAAACTTGACCCCCTCAGATCCATGGGTGTAAAATCAGCTTACTGCTTGAGTTTAAAACCTCAAGG # Right flank : CCCCCAACTACTTCCCACCATGTTGAATGAGAATTTTTGTTTGACTCTCTTTGAACCAAAATAGCGACGCATTCCCCCACCTAGGAACAGGTGGGGGTTAAGGAGCGGCGGTTTCTATGTTAGGATGCTATACATCTTGAGCGGTACGGTAAAGGGCGGAACTGAGATTTCCGAACACCCCGGAGACACGACCTCTCAACTGAGGGAGAAGCACCCTGTAAATCCTGTGGAGTCGGTTGATACACGTCGGACTCCGGGTCAAAGTTTCACTCCAAGCCCCATAGCGGAAACGACTTGGGGGTGTCTCTGGGCAAAAGTTCCCAGAACACGGCGAGAATACCGCCTGTCGGGAGGGATAAACCCTTCTAATCAAGACACCGCCACCTCGCGTAGCAGGTGGAGGAGTATTCATGACAATGGAGCAGCCAAACTGGGGGTAGAAGTAGGGAAGTGAGGGAAGCTGAAATCTCGATGAGGAGGGGATTCGAGAGATCGGGAGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACCCTCTTTGAAGGGAAAAGGTGCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 338631-338308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOXH010000001.1 Oxynema sp. CENA135 scaffold1_cov0_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 338630 37 100.0 33 ..................................... TAGACTTGAAATCGACGCGAAAGCTTGCTGTAG 338560 37 100.0 35 ..................................... TTAGAGAATCCGAACGAGAATCCGAAGAGAGAGAA 338488 37 100.0 38 ..................................... GACAGAAAGTATCCCGAAAATCGCTGTGACGACACAAC 338413 37 97.3 32 .............C....................... TTCTTTATCTTCGAGTCCCCATCGCACTCGAT 338344 36 70.3 0 ...G...G....-C......CTG..G.....G.C..G | G [338335] ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 93.5 35 CTTTCAATTAACTGAATCCCGGCAACGGGATTGAAAC # Left flank : GATCGACTCAATCCGCGTTTGGTGATTCCGACTCATTATCTAACGGAAGCGGCGGGGCAAGGGTGCGAGTTGGTGGCGGTGGATCGGTTTTTGAGTTTGGTGGATCCGGCGATCGTCGATCGCGCTGGAGGCGATACCCTGCAACTGACTCGGGAAAGTTTGCCGGAAACGGGGACGAGGGTGAAGGTGTTGAGTTATCGGTTTTAGGCGATCGGATGGGTTAAGGTGGGTGGAGGGGCGATCGGAAAAATTTTTCTGAGGGGGTAGACAGGAGTGAGTGGCGATCGGATGATGTCAACTAAGCCAATTTCTGGCGGGGGAAAGCGGGGTCGATTTCCCCGGGGGGCCCGCCAAAAGTCTAGAACCTTTACAAATCAATAGTTTTCGAGTTTTTGAGTGCCTCGGTTGGCCGAAGGCCAACGGCTGAAACGGGGGTTTGAGTAGACTCCCGCCAAAAACCGCTTACCGAAGCCCTCTGGGTGTACGTTTCAGCACCCGGT # Right flank : CCCTCGATCGCCATCAAAAAAGACCGCCGGAACGGTCTCTCTGTTCGTATTCGCGCACGACTCATCGATTACTCAGACATCGATCGCCCGTTCAAGCAAACACTACGGGACGACTGTTACCGAAAATTTCGTGTAACTTCACCACCGATCCGATCGCCGCGATCGCCGGAGCCTCAAACCCCGTTTCCTCCACCTGCCGCACGATCGAGCCGATCGTGCCGATCAACTCCTCCTGCTCGATGCGAGTACCCCAACGAATCAAGGCGATCGGCGTTTCTGGGGACAAACCCGCCTTTTGTAACTCCCGAGTAATATAGGGTAAATTGTGAATCCCCATATAAATGACGATCGTTTCCGAACCGTGGGCGATCGCCGACCAATTCACCTCGGGTCGGTACTTCCCCGCCGCCTCGTGGCCCGTCACGAAGGTCACCGACGAGCTGTAATGACGGTGAGTCAAGGGAATCCCCGCATAAGCAGGCGCCGCAATTCCCGCCGTT # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTAACTGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 365782-367311 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOXH010000001.1 Oxynema sp. CENA135 scaffold1_cov0_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 365782 36 100.0 38 .................................... CTAATAAAACTGCTTTGGGGTTTTTTGGTTTGGCTTTG 365856 36 100.0 38 .................................... GTTTTTTTTATCGGTCTGTTTGTATAAATTTTTATCTA 365930 36 100.0 39 .................................... CTTAGGAGCGCAATGGTTAAAATGTAGAAATTCACAATT 366005 36 100.0 37 .................................... GTTCCTCGTCCCACCCCTCGAAAAGGGCCTCCCAATA 366078 36 100.0 38 .................................... CGCAGAGAGGAACACAACTCTGGCGATCGAGAAGCATC 366152 36 100.0 42 .................................... TTCGCCTCCAAGGAAAGAAACTTCTGACCGAAACTGTAGTAA 366230 36 100.0 37 .................................... GTATTTATCCATTATTCCTATTCCTCCAGGATACGGT 366303 36 100.0 40 .................................... CAGCAGAGATCAAGTACTCGGTTTTTGCGTGGTGGCTTAA 366379 36 100.0 40 .................................... GTGATGACCGTCAAAGTTGACCAAAAAGATCACCTTTGGG 366455 36 100.0 41 .................................... TTGCCAATCGCGAGCAGCGTATTTCTTAATTTATCGAATTC 366532 36 100.0 40 .................................... GATCTGTCTGCCGAACCCGTCGCTCTTTCCCTTCTTAATA 366608 36 100.0 38 .................................... CCGCCCCCACTCTTGCTACTTTTAAATGGGGATAAGGA 366682 36 100.0 42 .................................... TCTCTTACGGGGGACTGCCCCGTGACGATCCGGTAATTCCGG 366760 36 100.0 40 .................................... TTTCTGGGCTGAACCGTCCCTGCAAAGGATGTTCCCTTCA 366836 36 100.0 35 .................................... GCCCGTGAGGTTGGTGCCCGTGAGGTTAGCACCGA 366907 36 100.0 39 .................................... GAGGCGCCCGAAAAATCCCATATTTTGCGCCCGAAAATA 366982 36 100.0 38 .................................... CTGTTCTCGACTTTGGTCAGAGAGGGTCCCACGATCGT 367056 36 100.0 37 .................................... AGGGGGAGACAGCGAAAGACTGACAACCCTTCAAGGA 367129 36 100.0 39 .................................... TCTAAACGATAAGATCCAAGTTCCTCTTCTGTATTATCT 367204 36 100.0 36 .................................... CAGAGGTATTCTTACCTGAACGAGGTTTAGCTGTAG 367276 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 21 36 100.0 39 GTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : GAAACAACCTTATGTTGCCTACCAAATTCGCTAATGTTGTTGTATGTTATCGTTTACGATCTTCCAGACAATAAGCGTCGTCAGAAAATCCACGACTTGTTAGAAGGATACGGACAATGGGTACAGTATTCGACCTTTGAATGTTGGCTCAGTTCTGACAAATATGCAGAACTCCAAAAACGGTTGCGTTGCCAACTTAATTTGGATGAAGACAGTATTCGATTCTATCCTCTTTCGCGGCATACAGTCGCTCAAGTCGAAACCTGGGGCATCGGTCCGCCTTTATGGAAAATACCCGGTTCCACAATTGTCTGACTCTCCTGCGAGGCTCGTCTCAAATCCCTGAAATGCCCAATCTTCGTTACGAGCCTCGATCCCTTGTCTGTCAAGCCTTTGAGCCTTCTTCCCTCCTCTCTTTTGGGCCGAATGTCATGACAAAATGGCTGAGGCTCGCAAACCGCCTCTGGACATCTGACTGCATAAGGGTTTCAATAGAGGGG # Right flank : CCTTGGGCAAGCCATTGAACAACCCGTCAGTAGTAGGGGCAGTGGGTTTGGCTGGAGTCCCTACGGGGGCGATCGCACTGAGGGCGCACGAGGGCTGCTGACAGGAAACCCTAAAAAAAGATAAAAATTTCCCCCGATCGCCACCTCAAAATTCAGGGAAATTCCCCGCCAAAACATCGACGGCGCGATCGCGATCGATCGTCGAATTCTCAAGACGCAGACAGACTGAAAATGCCCTGCCATCGGTAGAACAATGGCTTTTTCTCCCGGGCGATCGATCCCTCAAATCCTTGCCATTTTGCCGATTCATGCCCTAGGAGGGGATTGTAAACTTTCGAGAAAAACGCTTTTGTGTTGGATAGATAAGCAAAACGGAGCGCGACTCACTCCCCCCGCGCCCCCCATGCTTGTCGAAATTTTAGATGAATTAAGGGCGAACCGATTGTGAATAAACCCTCTTTCAGCGTAGCAACCTTGGCCGCGATCGCGATCGCCTCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 634122-632843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOXH010000001.1 Oxynema sp. CENA135 scaffold1_cov0_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 634121 37 100.0 38 ..................................... CTTCAGCCCACCAGGTACGTTCCCGCTTCATCCAATCT 634046 37 100.0 44 ..................................... TAATGATATGAAACCTATTGGGGAGGTTGCTTTAGAGATCATCT 633965 37 100.0 38 ..................................... TGTACTCATTATTCTCAGGGAACTGAGCGGGTAACTCT 633890 37 100.0 42 ..................................... ACCTTGAACCCTTCTTTATTGGGGTTCCAGTTGTAGCACACA 633811 37 100.0 48 ..................................... CTTACAGCTTCACCGTTACTGTTACGAGGAGTTGTAGTGATTACAGAA 633726 37 100.0 40 ..................................... CTTTGATTGCCTAAATACTTAAAGGGTATTCGGATCTTCC 633649 37 100.0 39 ..................................... GCATCCATATGGTTGAATGTCTCCCGGTGTCCATCTTCC 633573 37 100.0 37 ..................................... ATCGAGAAGACTTCTCTTTAGCTATTCAAATAATAAA 633499 37 100.0 38 ..................................... TTATTTAAGGGACTGGGGTGACCATACATACGACTCGG 633424 37 100.0 43 ..................................... AAACTGATCCCAAATGGAATCGATATTCATAAGTACTTTCCGA 633344 37 100.0 38 ..................................... AGTTCTCCCTTGATAGGAAGATTGATATTGAAAGGTAA 633269 37 100.0 37 ..................................... CTTACACCTAATTCTTCCAAGCGAGATAGTAACTTAG 633195 37 100.0 37 ..................................... ACCTCTGAAGGAGCCAGGAAGATCTCCTCTGCATCAA 633121 37 100.0 41 ..................................... TGGTCTTCTAGAGAAGCGTAAAGGATTCTATCCCCACAATC 633043 37 100.0 42 ..................................... GGAATGACTTCCTTACAGCTTTCCCACTGTTCATCGTACTCA 632964 37 100.0 48 ..................................... TCAGGAGATTCCTCTGAGAACCAGTTACATTCGGGAGAGTACACTTTA 632879 37 97.3 0 ......................C.............. | ========== ====== ====== ====== ===================================== ================================================ ================== 17 37 99.8 41 GTCACTTATGCCCAACTCCCCGTAAGGGGATTGAAAC # Left flank : TGCCTTATATCGATCGCTGGGTGGGCGCCGGGGTGCGCTTGCACAAAATGAGCCGTCACCTGTTGCAACTGTTTGCCGGACAGCCGGGGTCGCGCGCCTGGAAGCGCCACATCAGCGAGCACGCCTGTCGTCCCGGGGCCGGATCGGCAGTGATTTGTGAAGCCCTCATTCGGGTTCCTCGGGGATAAGGGGGTCGGCAGTGGGCGCGATCGGCTTCAGGTCGGGCGATCGGGGTTTTTGTAACGATTGTTTGCGCGAGGGTTGACCGATGACGGAAAGAGCTTTATGGTTGGATACAGCGATTAAGGGATTGGCAGCGAGCCTTATCTGTTTTTTCCGCAGTTACGGTGTCGTGATTACCTTCTTCCTCGTTTTTGCCCGATTTTGGGCAAATCCTCAGTCGCTAAAACAAAGCGTTAAGTTTTGTAACGGACGGTCTCCGTACTCTGGCGCAAACGCACCTTGAAAACCAGATACAGCAAGGGTTTCAATGGCATAGG # Right flank : CCGAAGGAATGTCCTGTAGGGGTTTGGTTACCAAACCCCTCNNNNNNNNNNGGGCAAAAACATCCGGCGAAAGTCCAGTAAATTAGATTCCCGCGTAACGCACCAATTCTTAGAATTAGAAAATGGTGCGTTACGGCGGACAGATAAATTAACCCTGGGAAATCACAAATCATCGCCGCCTAACACACCCTACCTGACTCCCCGCAAGGGGATTAAAACCCGAAGGAATGTCCTGTAGGGGTTTGGTTTCCAAACCCCTCCCCCTCCAGGGTTGGGTGACCAAACCCCTACGAGGTTTTTTGAGATGTTCGCGATCGAGAGTTGCTTGATAAAATTGTCCCGACGATCGCCCCTCCCGAAAGCGACCCCGCCGTTTCCTACGCCATCTCCAACCACCTTAAGATCTTTAAGATCTGCATCAGTTTTTTTGCAGGTGCGTTTGATGAGTTTTCCGATAGCATGGGAAGCAATCGTGCCTTCCCTCGCGATCGCAGCTCGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTATGCCCAACTCCCCGTAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 4 2055584-2057667 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOXH010000001.1 Oxynema sp. CENA135 scaffold1_cov0_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 2055584 37 100.0 34 ..................................... GATCTCCGGCTTGGATAAGTCGTTGAGCAACTCC 2055655 37 100.0 35 ..................................... TGGTTCGTATAGGCAGCCTCTATCAGGCTGCGCAA 2055727 37 100.0 34 ..................................... CGAATCCCGAAAGGTCACCTACTCGAAAAACTTC 2055798 37 100.0 33 ..................................... TTTTTGCAAGACCCTAGTGAGTGGCACTTCACT 2055868 37 97.3 34 C.................................... GATGTTCATTGTCCGTTTCCTTTCGTTTTTTCTT 2055939 37 97.3 34 C.................................... CCGATTGGCTGCTTGTGCTAGGGGTAGCGTACGG 2056010 37 97.3 38 C.................................... AGCTGTGGCCACTGCTTCAATGGCTCGATCCCGCCACC 2056085 37 100.0 34 ..................................... TCGCCTCCCCCCAAGATGCGCCAATGCCGCCCTC 2056156 37 100.0 34 ..................................... CGCCTCCCCCGCCCACTCGATTGCCCCCTCGCCG 2056227 37 100.0 35 ..................................... CTAAAAATGTTTGTGAGAATATCGGCGACGAATTT 2056299 37 100.0 37 ..................................... CGCTTGGTAGGAAGCCTCCGGGATTCCCTTCTCACGT 2056373 37 100.0 36 ..................................... CTTAGCGACCACGATCGCTTTCGCCCGGGCGATGGC 2056446 37 100.0 36 ..................................... TTCCCTTATCGTCGGCGCCGGATCTAGTCTCCATGG 2056519 37 100.0 36 ..................................... ATCTTGATTTGTGCTGAATGGTTCGACGGCGCCTTC 2056592 37 100.0 41 ..................................... AATCTAGAGCGTGCAGACTTAAGCTACACCGATTTGTGTGA 2056670 37 100.0 33 ..................................... GAGCCATTGGCTCCAATAGCGTACTCAGACTAT 2056740 37 100.0 36 ..................................... TCTTCCTGGATCGTGAGATCCCCGAGGAATTCTTCG 2056813 37 100.0 37 ..................................... GAGGGTCGTCGGTAACGGGATGCACCTCCCCTTCGAC 2056887 37 100.0 40 ..................................... TGGCAGCGCGACGCGCAACGACTACGTCGAGGCTCACGAC 2056964 37 100.0 38 ..................................... TTCAGTCAGGGGGAGTAATGGCTATGGCTTTCTCTTAT 2057039 37 100.0 35 ..................................... TTTACGATAAGGCGATCGTGCTGATCGACTTCAGC 2057111 37 100.0 37 ..................................... TTGAGAGCGAAATGGATTTGGCTGAATTTACCGCGAA 2057185 37 100.0 34 ..................................... GCATGTCCCACGCGTACTTGAGGCCCCCGATGGT 2057256 37 100.0 34 ..................................... TCACGACAAGGCAGCCCCCCACAATGGATACCAG 2057327 37 100.0 43 ..................................... GGCGGCTGCCGCCATCCTGGCGGATCGCCAGGAGGCAACGGAA 2057407 37 100.0 34 ..................................... CTGATTTGGATGAGGTTCATTTCATGGAAATCGT 2057478 37 100.0 34 ..................................... AAAGGGGCGTGCTTTTTCGATTGGAAAATTTCCA 2057549 37 100.0 45 ..................................... GCAAGGAGGGCAAATCCACTCTCCCTGCTTATTTTTCAAAGGATC 2057631 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 29 37 99.7 36 GCTTCAATGGGGCTGTCCCAAAAAGGGACAGTGAAAC # Left flank : AGATAATAAGGATAAGCCCACTCGCGGCGATCGCCGTGACGGGCGATCGTTTCTAGATAAGCATTAATCGCTTCTTTGGTACGGCGAAGCTGTTCCTCGGTCGGAGTCACGAAAGAGTCTGTAATCGTCATAACCCGGCGACTTCAAAATTGATAAAAAAGACCACCTACGTTATAGCATTCGAGCAAGGCCGTGTCAGGGGTTCGTCGCCCCTGCACTCGGGTGACTTCTTCGATCGCCTCACCGATCGGGCATCAGTAAGCCATACAATTTTTATTGAGCAAAACATAAAACATAATAATTTTTTTGCTATTGATAGGTTGGTCAGTTAGATGTACTGCTATAGTGATTCTCAATCTGCTGGAATTATCAATAGAATTTGAACCTAATTTGACCGTCGGCGCAGCCCGAGTGCGGTTGCTGGATTCGGTGTTTTCAAGAAAATGACAAATTGAGTGAACTGTCAGACATTGAAACTGCATGATTCTAGCAGAGTAGTT # Right flank : CTGCCGCCCTCTGAAAACCTTGTCCTATAAGGTTTTCAAGGTACGTTTGCGCGGATGTCTGGCAAAAGTTCATTTCAGCCATCGTCCTTAAGAGAAATTCTATCGCATCAACACCCCAAACCCTTATCTCATCAGAAATCCAGCACTTGCGCGAATCATTTTTCGAGACAAATCGCTGTATCCTTTGCAGTACAAGGCATTGAACCGTATGATGCGATAACTTCATTTCTACACCTACCCCTCCGCGCAAAAGTAGGGAACGAACAACCCCAGTCCGAAATGCGCGCCGTAGCCGATCGCGATCGGTCCGCATTGTTCCTCCACAAATTCTAACTCAATCCAATACCCTCGGTCTGAGGATTGATGACCTTTTCCCGAAGAGCGGCGGCGGCGGAAAGCGTGCCAGGGATAGCAACAATCGATATCGGAGTCGCTCAAAACACGAACGTCTGCCAGAGGTGCGATCGCCCATACCGCTCGCAAATGGTCGATCAGGTGCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGGGCTGTCCCAAAAAGGGACAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.90,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 5 2672903-2671706 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEOXH010000001.1 Oxynema sp. CENA135 scaffold1_cov0_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 2672902 37 100.0 38 ..................................... CTTGATGGCTTTTATCCCATCGCTTCCATTTAGATAAA 2672827 37 100.0 36 ..................................... GCTTATCGGTTCTATCGAGTCTATCGAGTCAACATG 2672754 37 100.0 41 ..................................... AAGCTCAGACATGAATTGAATGAAGGGAGAGGAAGTATGCT 2672676 37 100.0 40 ..................................... GTATTTAGCCCGCGTATTCGAGAGGCACCCAACATCGAAC 2672599 37 100.0 42 ..................................... TCTGTAATTCCCAGAACATGCCTCCGGTAGGCGAGCTGCCAA 2672520 37 100.0 46 ..................................... AAGGATGACAGCTGTGCTCTACTGGTCATCAAGTATGTTCTTCTCA 2672437 37 100.0 43 ..................................... TGCCCTAGTTCACGAGCGAACTTAGGGTTATATTCAGTGCCTT 2672357 37 100.0 44 ..................................... CTTCGCCTTGAGACTACTCAGTTTCCCCTTAGTCTCTTCCGAAC 2672276 37 100.0 39 ..................................... AACTTCGTTGCACTTGAGCATGAAGCTCAGAGAATTAGA 2672200 37 100.0 34 ..................................... ATCAAACTGGAGACTCGTCCATGCATAATGGACT 2672129 37 100.0 40 ..................................... AGCAAACTCACAAAAGTCCGCCAAGTCCTTCTGACACTCC 2672052 37 100.0 44 ..................................... TCTGCCCGGTGGAAGTAGTAGTAACCGTCTTCAGGGTCATTACG 2671971 37 100.0 37 ..................................... ACCTTTAGCCCCATCCCGCATCACCTGACAAGCGCAA 2671897 37 100.0 37 ..................................... TGTCCCCCATAGGGAACTGTTTGACCTCTCCTTTGAT 2671823 37 100.0 44 ..................................... CGAATTAATTCCTTGTATGGAAGCTATTAAACACTACATATTAG 2671742 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 16 37 100.0 40 GTCACTTATGCCCAACTCCCCGCAAGGGGATTGAAAC # Left flank : TTGAATGTCCCGTGGAGGGGGAAATTCTCTGCGAACTGATCGAACGGCGTTGGTTGAAGGTCCTGAAGCTGTCCGAAGACAGTTTGCGCGCCTATCCGCTCTCCGGTACCGCGAAAAAGCAAGCCAAGATCTACGGCAGTCCGCCCCTGTACGAACCGCCGGATTATTTGATTTTGTAACGTCCCGCTAGGGGCGTAGCGCGATCGCGCCTACCTGGAATCTCCATTTGACGCGGGATTCCAGGTGTTGTTTCTAAATGTAACAATTGCCGAAACTGCGACGGAACGAGAAAAATAGAGATTGACGTCCTCAGAGAGAGTAAAAATAGTATTTTCCGCCTTTTTCTTTCTGAGGATTTCGGTTATAGTAGTTCCGTGCTTAAAAAACAACCGCAATTTCAACGCCCCGGCAGCAGTTTAACTTTTGTAAAGCTGCTCCTCCGTACTCCGGCGCAAACGCACCTTGAAAGCCAAATACAGCGAGAGTTTCAATAGCATAGG # Right flank : CCCTTGATAGGAGCGAAAGCATCACAATCCGACAGGAACGAAGTTTCGGTAGGGTGCGTTAGCGGGCAAAAATATCCGGCGAAAGTCCAGTAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTATGCCCAACTCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA //