Array 1 242845-241368 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBO01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain K2442 NODE_6_length_266051_cov_41.3559, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242844 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 242783 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 242721 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 242660 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242599 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242538 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 242477 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242416 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242355 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242294 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242233 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242172 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 242111 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 242049 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241946 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241885 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241824 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241763 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241702 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241641 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241580 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241519 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241458 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241397 29 96.6 0 A............................ | A [241370] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260409-258977 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBO01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain K2442 NODE_6_length_266051_cov_41.3559, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 260408 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 260347 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 260286 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260225 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260164 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 260103 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260042 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 259981 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259920 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259859 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259798 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259737 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 259676 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 259615 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 259554 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 259492 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 259431 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 259370 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 259309 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 259248 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259187 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259126 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259065 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259004 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //