Array 1 34-240 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZW01000237.1 Xanthomonas fragariae strain PD 6881 isolate PD 6881, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34 28 96.4 32 ...............C............ TTACCAAGCAGGTGCACCAGAACTGCCCGCGT 94 28 100.0 32 ............................ CATTTGATTTTAATGGACTCAACAAGCCTCTC 154 28 96.4 31 .............C.............. TATCGTCGCGCCACGCATAGCAGACCGGTGC 213 28 82.1 0 A..........TC........G..T... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GGAAACCCTGGGCGTATCATGTGTAGTAGTTAGG # Right flank : ATGCGACCGGCCCGTCCACTCTCGCGCTGTATTTGCCACGACTGTCGCGTCTCATGGACAGGCGACCTGCAGTGCTCCATGCATCGGCATGTGCTGTTGAACAGGTGACGTTAACCGCGCGCGCATTGGAAAGGCATGTTTGCGCAGGCGTAGCAGTGTACGACGCGTGACGTCGTCGACGCCTTCAACAGACGTGCAACGCAGGGGAAAACCGGCGGAAGATGCACTGCGATAAAGCCACGCCGCGCGCATCACCCGCGCGTGCACTCACTTGCGCCAGTAAAACCCCAGGAACATCGCCACCGCCGATTCGGCCATCTGCGTCTGTTGCTCCGGCGACAGCGGCGGCTGGCCCGTGGCGAGCTGCGGCCAGAACGCGAAGCCCTGCACCAACGCCTGCAGCTGCTGCGCGGCGAAGTGCGGCTCCACGCTTGCGAGCCGCCCGTCGGCCAACGCAACGCGTCGCCAGGTGGTGGTTCCTTCCTCCTTGCTGCCCAACG # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30664-32792 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZW01000215.1 Xanthomonas fragariae strain PD 6881 isolate PD 6881, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30664 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG 30724 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC 30785 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 30845 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT 30905 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA 30965 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC 31025 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG 31085 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC 31145 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC 31205 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT 31265 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC 31325 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT 31385 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 31445 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 31505 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 31565 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC 31625 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 31685 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 31745 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC 31805 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 31865 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 31925 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 31985 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 32045 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 32105 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 32165 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 32225 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 32285 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 32345 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 32405 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 32465 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 32525 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 32585 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 32645 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 32705 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 32765 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //