Array 1 56786-55233 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFAU01000013.1 Neisseria meningitidis strain 2842STDY5881405, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================================================================================== ================== 56785 36 100.0 41 .................................... TTTCTGTTTTTGCTGATAGATTCCTGTGGTTTTTCGGTTGC 56708 36 100.0 41 .................................... TTTCTGTTTTTGCTGATAGATTCCTGTGGTTTTTCGGTTGC 56631 36 97.2 42 ..............C..................... GGGTTCTGTTTTTTCCGATAAATTCCTGTTGCGTTGCGTCTT 56553 36 91.7 161 ...........C.GC..................... GTTCGGTTTTTTCTGATAGATTCCTGTGGTTTTTCTATGGATTCAATCATTCCTGATAAATTCCCATAATCTAAAATCTCGTCATTCCCGCGAAAGCGGGAATCTAGGACGTGGAATCTAAGGAAACTGTTTTATCCGGTAAGTTTCCGTGCCGACGGGTC 56356 35 88.9 162 ...........C.GC............-........ GTTTCTGTTTTTTCTGATAGATTCCTGTGGTTTTTCTATGGATTCAATCATTCCTGATAAATTCCCATAATCTAAAATCTCGTCATTCCCGCGAAGGCGGGAATCTAGGACGTGGAATCTAAGGAAACTGTTTTATCCGGTAAGATTCCGTGCCGACGGGTC 56159 36 100.0 40 .................................... TTTCTGTTTTTTCCGATAAATTCCTGTTGCGTTGCGTTTT T [56131] 56082 35 94.4 42 ........A..................-........ GTTTCTGTTTTTGCTGATAGATTCCTGTGGTTTTTCGGTTGC 56005 36 97.2 40 ........A........................... TTTCTGTTTTTTCCGATGGATTCCTGTTGCGTTGCGTTTT T [55977] 55928 36 100.0 41 .................................... TTTCTGTTTTTGCTGATAGATTCCTGTGGTTTTTCGGTTGC 55851 36 100.0 41 .................................... TTTCTGTTTTTGCTGATAGATTCCTGTGGTTTTTCGGTTGC 55774 36 97.2 42 ..............C..................... GGGTTCTGTTTTTTCCGATAAATTCCTGTTGCGTTGCGTCTT 55696 36 91.7 161 ...........C.GC..................... GTTCGGTTTTTTCTGATAGATTCCTGTGGTTTTTCTATGGATTCAATCATTCCTGATAAATTCCCATAATCTAAAATCTCGTCATTCCCGCGAAGGCGGGAATCTAGGACGTGGAATCTAAGGAAACTGTTTTATCCGGTAAGTTTCCGTGCCGACGGGTC 55499 36 100.0 41 .................................... TTTCTGTTTTTGCTGATAGATTCCTGTGGTTTTTCGGTTGC 55422 36 97.2 42 ..............C..................... GGGTTCTGTTTTTTCCGATAAATTCCTGTTGCGTTGCGTCTT 55344 36 91.7 40 ...........C.GC..................... GTTCGGTTTTTTCCGATAAAGTCCTGCTGCATTGTGTTGC 55268 36 80.6 0 ........T..G..C..............C.CC..A | ========== ====== ====== ====== ==================================== ================================================================================================================================================================== ================== 16 36 95.5 65 TGGATTCCCGCTTTTGCGGGAATGACGGCGGTGGGG # Left flank : TTAGTACTCTTTTCTCGTCGAAATATACTGCCCAATTTGAATCTTCTGTACCTTCTTTTTCTCCCGTGCCTTCTTTATCGGAACGGAAGCTCAACACGACAGCAGTGCGTTGTACGGGTTCTAAATATAAATCGTCGTCATCGGTAGCATTCGCCTGAACCGTTGCAAACAACAGTGTCGCCAATACGGCGGTCGCCACGGTTGCGGAGGCGCGTTTGGTGTGGTTGCGTGTGAGCTCGGATACGACGACCCAGGCATTGAGGGCACTATTCCAAATGATGCGGTATATTTTGTTCATTTTGTTTTTTCTTTTGGTTTGTTTGAATGGTTAAATCGGGGTTTGGGGGCGGATGGTGCGGCATCCGCCCGGTTTTTGGGGGTTGGGGGTTTTCTGATAAATTCCCCCAACTTAAAATCTCGTCATTCCCGCGAAGGCGGGAATCTGGGACGTGGAATCTAAGGAAACTGTTTTATTCGGTAAGTTTCCGTGCCGACGGGTC # Right flank : CGGCAAACGACCATACACAATTATTGACAACCCCATTTATTGCGAAAGTCAGCCTAGGAGAATCGATCTAATTGTCAACATTCCCTTATGATCAAAGGGATTACACTTTATTTTACGCAAATTCGGGGGGGGGTGATTTTTGATGTTTTTTGACGAAAATTTACATTCTGACAACAGAAAGAAAAAAGCCGTGTCGCATCTGTGCAACACGGCTTGGCGGGCGCAAACGGATATAGTGGATTAACAAAAACCAGTACGGCGTTGCCTCGCCTTAGCTCAAAGAGAACGATTCTTTAACAAGTGAATCGGTTCCGTACTATTTGTACTGTCTGCGGCTTCGTCGCCTTGTCCTGATTTTTGTTAATCCACTATAAAACGGTGTTCCCTGCTACCGCAGGCGGAACGCCGAGGAATTTTCCGAAGGGGTTCGGCTGCCGCTATATCACGAAATCCAACAGGTAGAAATCTTCTTTACCTACGCCGCATTCGGGGCATTTCCA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGATTCCCGCTTTTGCGGGAATGACGGCGGTGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.90,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //