Array 1 30642-31667 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFDG01000008.1 Neisseria meningitidis strain 2842STDY5881471, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 30642 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 30708 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 30774 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 30840 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 30906 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 30972 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 31038 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 31104 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 31170 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 31236 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 31302 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 31368 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 31434 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 31500 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 31566 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 31632 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.3 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //