Array 1 12203-11869 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGYV01000013.1 Bifidobacterium cuniculi strain LMG 10738 Contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12202 29 100.0 32 ............................. ACCACGACCATCAGTTTGGACGGTGGACGCTG 12141 29 96.6 32 ...............A............. ACGGGCCTCGACAACCTGCTTGGTGAAGATAC 12080 29 100.0 32 ............................. AACGCGTCGATGGCTCGGCGTGTGGGTTGGAT 12019 29 100.0 32 ............................. TCCTTCGGCACTGCCAGCGGTTTGCCGTCGTC 11958 29 100.0 32 ............................. ATGAGAAGAGCCACCCCACCTACGGGGTGGCT 11897 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 AGTTGCCCCGCGTATGCGGGGATGATCCG # Left flank : GACCCGGAAAGCGAAGTTGCCCCGCGTATGCGGGGATGATCCGTTCTGTCACCCGCCATTGCGGTATTGCTGACAAGTTGCCCCGCGTATGCGGGGATGATCCGCGACGGCAGCCCTTGGGCACTACAGCAGACTACGGAGCAGGGCGACGAACTTGTATGCAGTCTCCAGGGAGACGCGCGCCCCGTTCAGCGTGACGCGAATCTCCGAGTCGATGGTCTCGACCTCGACCACGTTGTCGCCGACTTGCAGCCGGCCGCTGATTACGGTAGTATTCTTCATGGTTATCTTTCCGGGCACTACGGCCCGAAAGACATTACCCCGAAGGTTGCAGCCTTCGGGGTATTTTTTACCCTTCGGGCCGTTCTACCATCACCACGGCATGCCCCACCGTGGATACACCGCGCGACATCCGCACGGCTAGTGCGCTAGTCAGGCTATGAGCCTGTAGGGCTAAACCCTCTAGCGCTGACGACTGTGACTAGTCGTCCAGTAACCTC # Right flank : GACCATTTCCTCATCGATTTCGGTCCTGAGGCCACAGCGCCGGAAAAAGTTTTGTACCAGTTATCGCAATTCAATCTGCGACACCCATCTTCAGGCATATCGGAACTATGGGTATTCGATGCAAAAGGCCTGAGAGAAGTACGGTTACTCAAAAAATCGGGAGATAACCCCTTGACTTATCTTCCAGTCTTGAAAGCTGGTTGCATGGAATCTCCCGACAGGTTCATTTTAGCACGATGCTACGGATATGCCACAAAAGTAGAAAGGAGCCATTGATGGCAGAATCGGACACCACCCCTCAGCTCGCAGACCCTGAGCCCACGGCATCCGACGACGAGACCGCCACCGGCACTGAACAGGCACCCTGGGCCAGGGAAGGCATCGAGTTCGACGCCGACAAGGCCTGGAAGCTTGTGCTGAACTTGCGCGAGGAGAACAAGGGCCTCAAGGAGAAGAACCGCGCTTACGAGGATGAGAAACTCTCCGAAAAGGAGAAGGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGCCCCGCGTATGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17922-12599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGYV01000013.1 Bifidobacterium cuniculi strain LMG 10738 Contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================ ================== 17921 29 96.6 32 ............................A GGACATCGACGCGGAGGTCAGGGCGAAGGCCC 17860 29 100.0 32 ............................. AACGTGGCGTCGTCGCCGCACTTGCGGAACGA 17799 29 100.0 32 ............................. CGTGAAGCTGATCGGCCTTGCACGGGCGAGGT 17738 29 100.0 32 ............................. CGTTCAACCCGAACATGCTGGACGCGGTCGTA 17677 29 100.0 32 ............................. CCGCCAAGGTCGGACTCGGCACACGATACGTA 17616 29 100.0 32 ............................. AACGGTGTCGAGCGCAAGCTCCACAACTCCAA 17555 29 100.0 32 ............................. CAGAACGGATGCACTGGTACGCGACTACCTGC 17494 29 100.0 32 ............................. ACGTCCACAATGAGCTCGATTGGTGCAAACTC 17433 29 100.0 32 ............................. CGCCCTCACCGGCGTCTACGATGACAAGGCCT 17372 29 100.0 32 ............................. ACGACGGTTTGGGGCCGTCCCTTGTAGTCGCC 17311 29 100.0 32 ............................. AGTTCGGCACGGGCGCGCTCATGTACTCCCAA 17250 29 100.0 32 ............................. TTCATGGCGGCACCGGCCGTTGGGCAGATGTT 17189 29 100.0 32 ............................. TTCACCGTCCCACCGAATGAGAGCAGTGGACA 17128 29 100.0 32 ............................. GTCAGCGTCCGCCCCGGCAACCAGCGCATCGA 17067 29 100.0 32 ............................. TGTGGTGTTGGTGGTAGAGAGCGCGACGAGCA 17006 29 100.0 32 ............................. GACTTCTCGGCAACGGAATGCCCCGCCTCTCT 16945 29 100.0 32 ............................. ATGCCGACGGGGGCGCCGTTGTTGGCGGCATC 16884 29 100.0 32 ............................. TTCATTGTGGACGTCTTTGCCGTACACGTGCT 16823 29 100.0 32 ............................. TGATGTCGGTGTGTCGCCCCGCCCACATCCAG 16762 29 100.0 32 ............................. GCGTTGCGCGCTGACCCGAAGCTGTTTATCAG 16701 29 100.0 32 ............................. GCTGGGGCCCACTACATGTTGACTATGACGAC 16640 29 100.0 32 ............................. AGCACTACGAGCCGCCAGATACGGCAACGCCG 16579 29 100.0 32 ............................. CAACGTCGCGAGTCCTGTCGGCCGAGAGGTCG 16518 29 100.0 32 ............................. TCAACCATGAGGGTACTATCAGCAAAATTTTG 16457 29 100.0 32 ............................. GTATCCGTACCGTTCCCGTGTTTTATGATGCG 16396 29 100.0 32 ............................. GCATCAGCCCGTGCCGCTCGCAGCGTGGGCGC 16335 29 100.0 32 ............................. TTTTGGGGCCGGGATGCTGTTCCTGGCGTTCG 16274 29 100.0 32 ............................. CATGAGCCGACGCGGCGCAGGGTTGCACAATG 16213 29 100.0 32 ............................. GTTTGCCACGATGTCAACGGCGTGCAGATTGT 16152 29 100.0 32 ............................. ACCACGGCATCAGGCACACCTCCCCACAAAAA 16091 29 100.0 32 ............................. CCCCGCGAGGTACGTAAATCCTTCAGACTCAT 16030 29 100.0 32 ............................. CCCGTGCAGGGCGTCCTGGTCGAATCCGACGA 15969 29 100.0 32 ............................. AACCCGCATTCTAAGGGAAGGGAAGAAGCATG 15908 29 100.0 32 ............................. TGCTTCGCTGCTCATGCCACGTCCTTGATGAG 15847 29 100.0 32 ............................. GTAAAGCCCCCATTTATCGATCTAATCGACGA 15786 29 100.0 32 ............................. TCCCCAAAATCTCACCTGCCGAGGGTACGGCA 15725 29 100.0 32 ............................. CGGAAACCATCGAAGTGGGCGCGTTGCGTGGC 15664 29 100.0 32 ............................. TTATCCAAACGGAAAACCTCACAGACAGGAAG 15603 29 100.0 32 ............................. CTCCCCCTCGTTCGATTTCATCGCCCGAGAAC 15542 29 100.0 32 ............................. AATTGGCCACTGCCTTATGGCATGGCCATTCT 15481 29 100.0 32 ............................. GCATCCGTACCGTTCCCGTGTTTTATGATGCG 15420 29 100.0 32 ............................. GGCATGGTGGTTTCCTTGGTTTCTCGGGGGTC 15359 29 100.0 32 ............................. GGGATGAGCGACATGGCCCTAAGTTTATTCAA 15298 29 100.0 32 ............................. TCTGTTCTGGTACTGCGCGCAATGCGAGGTCG 15237 29 100.0 32 ............................. CGCGGCGCACGCATTTATGGATGCACGCGCGG 15176 29 100.0 32 ............................. TGGGCGGTGATGGACGCGCTCATGGCACAAGG 15115 29 100.0 32 ............................. GAGTTGCAGTCGCAGCTGGTTGCCGAGCAGGA 15054 29 100.0 33 ............................. GGGGCTGACGCGCAAACTGGAGGATCAAAAAAA 14992 29 100.0 32 ............................. TCTTTCTTCTTAAGGAGCGCTTGGACGACCCG 14931 29 100.0 32 ............................. CGATGTGAGCCGCACAGGTCCGCCAACCGCAC 14870 29 100.0 32 ............................. GCCGAGTAGGCCATGAGAGCCACATAGGCGGC 14809 29 100.0 32 ............................. GACGCGAACCGTTTGTCGCAGGAAGCCAATGC 14748 29 100.0 32 ............................. AGGTGGTCCTGTTGGGTGATGTTGGTGGCCAT 14687 29 100.0 32 ............................. GTCGTGTTCGCCGACGCCGTCACCACCTCCAA 14626 29 100.0 32 ............................. CCACTTACCGCGCTGCCCCCACGGCTCCAGGC 14565 29 100.0 32 ............................. CGTTGGGTGTGAGCGGCTGGGAGCGGGTATCC 14504 29 100.0 32 ............................. ACGCGGACGCGCTTGGCTGAGTTGATTGCCGC 14443 29 100.0 32 ............................. CGGACGGATATGCTGGTGTTGTGGATGCGTGG 14382 29 100.0 32 ............................. GCCGCCGACCGACTCGACGCCTACCTAGAGCG 14321 29 100.0 32 ............................. GGTAGGCCGGCCCATTATTGCAGCGACTCATG 14260 29 100.0 32 ............................. CTCGGCGCCGTCGAGGATGGATCTCAATGTGC 14199 29 100.0 32 ............................. AGACCCGGCAGCGCAGGAACCGCATGCCGCCC 14138 29 100.0 32 ............................. CGTGTCATCGACCGTGGTAGCGTCCATGGTGT 14077 29 100.0 32 ............................. GCCGACGAAATTCTCGAGTCCGCGAAGGGGGA 14016 29 100.0 32 ............................. TCGGTTTGCAACCCGGCGAGCGCCCCCCGTAT 13955 28 96.6 32 ....................-........ ATTGTTTCGGGCATGAGGCGGGGGCGGTCGAC 13895 29 100.0 32 ............................. ACACGTGTCTCGAGGGGGAGAGGCGCTGCCCG 13834 29 100.0 32 ............................. GAAGATAACCAATGACCGATGACATCCCCGCC 13773 29 100.0 32 ............................. ACGGCAAGCGAGTGGGGACGATACCGCGCGGC 13712 29 100.0 32 ............................. CGCCATCGTTCAGCGCCCTCCTCAAAGGCGGC 13651 29 100.0 32 ............................. GTACGGTCTCCAAACTCATCAGCGGCCGCGCC 13590 29 100.0 32 ............................. GATTTGTAGGCGTCGAATTCCTTGCCTGCCGC 13529 29 100.0 32 ............................. CTGGAGCAGGGCGTGGTGCCATGGCGCAAGCC 13468 29 100.0 32 ............................. AAAAGGCGCCGACTCGACTGCGTTCGGCACAA 13407 29 100.0 80 ............................. CACGCTCAGCATCCACTACGCGGCCGAGATCAATGCGGGGATGATCCGACGTTGCAGGCACAGTTGGGGCATGCGAGTGC 13298 29 100.0 32 ............................. CCCCCACCGTATGCCCAACGTGCATGCTCAAA 13237 29 100.0 32 ............................. GCCGCCGGGTGGCATCCTCACCGAGGTGGGCG 13176 29 100.0 32 ............................. AATCCGGTGGCGAAGTCGCCGACCATGAAGGC 13115 29 100.0 32 ............................. CCGGCTTCCATTTTTTCGCCGGTGGTGAGGGT 13054 29 100.0 32 ............................. CTCGAAACGGTTCAACCGATCGGGATGCCCGG 12993 29 100.0 32 ............................. ATTCGACGCACTGTTCAAATACGCGGCACCAG 12932 29 100.0 32 ............................. AAGGATGCCGCTGCCGCGAAGACGGACGCGGC 12871 29 100.0 32 ............................. ATCGGCGAGGCCGGCAGCAACGTGCTGCGCCC 12810 29 100.0 32 ............................. TGCCCACTGGCCGGGCAATGGGTCGAAGGCGG 12749 29 100.0 32 ............................. ACCTACACGGAGTTCGATGACCCGGAAAGCGA 12688 29 100.0 32 ............................. TTCTGTCACCCGCCATTGCGGTATTGCTGACA 12627 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================================ ================== 87 29 99.9 33 AGTTGCCCCGCGTATGCGGGGATGATCCG # Left flank : GATTTTGACGATGCGGACCTGATCAACAGGGCATTGTCTGCCGTCAATACGTCACTGTATGGCGTGGTCCATGCCGTAATCGTGGCGCTTGGCTGCTCACCGGGACTCGGGTTCGTACATGCGCGGGACGAACGGAGTTTCGTATTCGATATCGCCGACCTGTACAAAGTGGACATGACCATTCCCCTAGCTTTCGACCTTGCTGCAATGGAAGTCTCGGATCCGTCGTCGGCAGCCCGGAAATCTTTGAGGAATAGGATGAAAGACGGCAAATTCATGGAGCGCTGTGTGCACGACATACGGCGTCTTCTGCTTGTTGATCGGGATGGTGGCGCGGACGATTTGGAAGTCGAAGATACGAGGATCCGGATTACGTGCACTGTCAACTATGAGGTTGAACCAAAGTGTCAACTATGAGGTTGAACTATACACAAGTGAGCGTTGTGCAAATCAAATTTTTCAGGCTTGTCAATGAATGGGGTTTGGCTTACTATCAGTCT # Right flank : CGACGGCAGCCCTTGGGCACTACAGCAGACTACGGAGCAGGGCGACGAACTTGTATGCAGTCTCCAGGGAGACGCGCGCCCCGTTCAGCGTGACGCGAATCTCCGAGTCGATGGTCTCGACCTCGACCACGTTGTCGCCGACTTGCAGCCGGCCGCTGATTACGGTAGTATTCTTCATGGTTATCTTTCCGGGCACTACGGCCCGAAAGACATTACCCCGAAGGTTGCAGCCTTCGGGGTATTTTTTACCCTTCGGGCCGTTCTACCATCACCACGGCATGCCCCACCGTGGATACACCGCGCGACATCCGCACGGCTAGTGCGCTAGTCAGGCTATGAGCCTGTAGGGCTAAACCCTCTAGCGCTGACGACTGTGACTAGTCGTCCAGTAACCTCAGTTGCCCCGCGTATGCGGGGATGATCCGACCACGACCATCAGTTTGGACGGTGGACGCTGAGTTGCCCCGCGTATACGGGGATGATCCGACGGGCCTCGACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGCCCCGCGTATGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 580048-579775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGYV01000001.1 Bifidobacterium cuniculi strain LMG 10738 Contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 580047 30 100.0 31 .............................. CGAAAGGAACCCTCATGCGTACTCGCACCAG 579986 30 96.7 31 A............................. ATGCAAGGAGCACGAACATGTACGAATCACT 579925 30 100.0 31 .............................. CCGTTTCAGCTGCTGGACGAGGGCATGCTCG 579864 30 100.0 30 .............................. GAGCGCGAATAGCGGCGGCCCTTGCCCAGA 579804 30 80.0 0 TA....TT..A..................T | ========== ====== ====== ====== ============================== =============================== ================== 5 30 95.3 31 GGGATGCCCCGTACAGGCGAGGACACTCCC # Left flank : TGGGGTGATGTGGTTCACCACCAGCCAGGGCCAATCGTGGCGTGTGGCCATTGACGATGACATGCAGGTGGGCGATTGTGATTTCGAGTTGGCGGACTGCCGCCAACTATGGGTGGGCATCACCCCGGAAAATGCGGACGGGGAACCGGATTGGCAAGGGTATGACACCGCTGGGCAGGCCGTGCACGATGTCGCGGCTTGGCTTATACAGGACCGTTGCCGGACGCATAGTCAAGGATGACTGCATAAGAGGCTTGTGCAGGATACGAACCGCACTCTTGGTGTGGGGGATACGGACAACGGGCGTGGAGAACCACATTCCGACCATCTTCGGATCGTCGGATGGGTTCGATGAAACGCCTATCAAGCAGCCACCGGACTGGTGGTGTGAGGCTTGAAGCTGACCGTCGCAAGGCGGTCATATCCACGCTTGTGGGGCAAACCGAAGTTTTCGGATTCCCTAATGTTGCCGAACCCTGGTTTTGCAACGGTTTGGATAG # Right flank : CCTCGACCGCTCAACCCCACTGCTGATTGGCCCTTTCCGGTCGCATAGAGGGTGGGTGAACGCACACCATATGTCAGGAAGGACGATGATCATGGCGCAGCCACGCAAACCCAAAGGGTCGCCCAATGGCACGGGAGGCCAATTCGACCATATGAACCACACGGACATGGGCCTGCCCGCGTTGGACGTGTCCACCCAACCCGTGGGCGGACAGTTCATCGACAAGACCGCCGAGATCGCGGAAAAACTGTTCGACCGCAAGCAGGACTGGGACGATCTGCCCATTGGCGGGTGTTACCGGATCAACGATTTCGGCGATTACGTCACCGAGGACGATTGGCGGGACGTGTGGGACGAGCACCCGTTGGAGGAGAAAGCATGGATGCTCGCCGACAACGGCCAGTACACCACGGACGAGGTCGCCCACATGAGCCCCGCTGAGATCGAACACGCCTATGATGCGGGTGGTTTCCACCCCGCGTACGTGTTTTACACCGAAA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGATGCCCCGTACAGGCGAGGACACTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //