Array 1 17155-15956 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCBV01000017.1 Porphyromonas gingivalis strain Ando, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 17154 47 100.0 30 ............................................... CCATTGACAAGATCAAGGCAGATCCAAAGC 17077 47 100.0 30 ............................................... GAGACTCAAGGGTCGCAGAGGTGTATTGGA 17000 47 100.0 30 ............................................... TCTATAGAGAAACTGAATGATTACTTGAGA 16923 47 100.0 30 ............................................... AAGGTTGTCTAAATAGAGAAAATAGCTCAT 16846 47 100.0 30 ............................................... CAAGGGATATGGTTTCCAAATTCTATGAGT 16769 47 100.0 30 ............................................... ACCATGTAGCCCTTGATGGCTACGGATTTG 16692 47 100.0 30 ............................................... ATGCGTCTGGCGACGGTGTACGCGTGTGTC 16615 47 100.0 30 ............................................... CAGAAGCGTGTATCCCTGCATGCTCTTTTG 16538 47 100.0 30 ............................................... CCAAGGAGCGGGGCGACATCCTTGGTTACC 16461 47 100.0 29 ............................................... GCATTACTATTTAGACCTGCCTCACCCCG 16385 47 100.0 30 ............................................... ATCGAAAGGTCTACAAAATCCGCCATCGCC 16308 47 100.0 30 ............................................... AATACGCAAGCAAGGTCATGTCATATCACT 16231 47 100.0 30 ............................................... AAAAGACTTGTTTAAGCTATTTCTGATATA C [16220] 16153 47 100.0 29 ............................................... AGAGTTTTGAAACTGAAAATATTTTTGAT 16077 46 97.9 30 ............-.................................. TAATGGATAATAATATGAAGATTAGGGATA 16001 46 97.9 0 ............-.................................. | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 99.7 30 GCTGTGCGTTGCCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : GTAATGAGTCATTACAGATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGAAACTGCAGCCGACAGGAAACGTGCAGCAATCTTTCGGAAAAATCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCTATCTATATCAGACACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGGGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCAGCCATGGAGATCATTTGTGGGAAAGGAAGAGAGTATTATCAGCCACCCCTTCAGCTTGAACTTTTTTAAATATATTCTATCATCTTTTGTGGAATTAGCGCTTTTCGTCTGGGGCATAGAAATTAAAAAGCCGAGAGAAATCTCGGCTTTTCAGTTACGCACAGTTGTTTTTTTACTCACAATCACCCTCTATGTCCTGTATTACAGGTGATTACGGGGATTAA # Right flank : TACCGATTCGGGTTTGAGGTTATCAGCAAAGGGGGAAGGGTATGGGAGGAGCCGTACTTTGCACAAGGGCCATTCCCCGAAAAAAATAAAGGCTGATCGGCAAGGAAACAGGATAACACTCCCCCGTACTCACATCGCCAACCAGCTTTATCTGCCACAAAGATAAACAAAGTTTATGAATCTGCAAGAGCTCAAGAAACTAATCATAAAAGATTTCGCCGGCTGTGCGTTGCAACAACATTACTAAATCTGAAAGCTATTCCCTGTGAAAAAAGGGAGACCACGAAAATAATAATCTGCTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACGAAGACGAGTTTGGAACGATTCCAAATAAGTATCTGTAGAGAGGAGAAAAGCAAGGTAAAAGTGGAGGGAAAAGGAACTGCCATAGATCTAAATTCCACTTAAAACAAGCCGTACAACGATCTGTATATAAAGCGTTTTCAATTTGTATACAAATCGTTTTCATTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 61320-62343 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCBV01000109.1 Porphyromonas gingivalis strain Ando, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 61320 36 97.2 30 ................A................... TAGACTTTTAACTTCTACAAAAATAATTAA 61386 36 97.2 29 ................A................... AAGTCCTTAACGGATTTACTTCCGTATAG 61451 36 97.2 30 ................A................... AAGGTCTCCAAAGCACCGCTACCGCGCGGA 61517 36 100.0 30 .................................... CAAATTCCTCAAAAAGCAGAAAGTGGTCTG 61583 36 100.0 30 .................................... ACTAATTTTTGAAGGTGCGACCGTTAAAGA 61649 36 100.0 30 .................................... AAAATAGCCAGTTTCTATGATAGATTCTCT 61715 36 100.0 30 .................................... CATGATAAAAGTCTTAATTACATAGAATCA 61781 36 100.0 30 .................................... CATCAGTTACATCTCTAAATATGGTGCTTT 61847 36 100.0 30 .................................... TATTCCGAATTTTTCTCTTTTGATGTCCGC 61913 36 100.0 30 .................................... AAAAAGGCAACAAAAAGTTGCTGATCTCGG 61979 36 100.0 30 .................................... TTATTCTATCATTATTATAAAAGCTCTTTA 62045 36 100.0 30 .................................... TCCGATGAGATGTTGACTAAGCTTACTCTT 62111 36 100.0 30 .................................... CAATTGAGAAAAGCATAGAGACCTCTTTGC 62177 36 100.0 30 .................................... AAAAAGGCAACAAAAAGTTGCTGATCTCGG 62243 36 100.0 29 .................................... GGTAGGCTCAATAGAGGACTATGTAGACA 62308 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.5 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATTTTGTATACAAATCGTTTTTGATTTATATATAAATCGATTGCGATAAATATATAGATTGCAAGCCGATTTGATATAAATCGGGCAACTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCAAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGACTCTCAGGCTCTACCGCTCATACAGCAGGTTTGCATCAGCCATACGCAACGCCGGCATAAACCACACAAGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGATACAAATTCGCTGAAGAAGGGAGCACCTCGTTCGCCCGCAAATGTAGTGAAAAAGCCCCAACGCGGAAGAATCCCCACACTACACCCTCCCTCTACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCAATTGAGAAGTCATAATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCATTGCAAACCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCGCTCAAAAGTTCAACGTTCGCTTTTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACGGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //