Array 1 82876-84306 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBE01000004.1 Salmonella enterica subsp. enterica serovar Mgulani strain BCW_2732 NODE_4_length_209629_cov_4.87696, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82876 29 100.0 32 ............................. AACATTGTCATAAATTTTTTTCAGTCGTTGGA 82937 29 100.0 32 ............................. ATGATTTTGGCTTTTTCCAGCCATCAGATATT 82998 29 100.0 32 ............................. AATAGCGGCAGGGGGTACGAGGGTTATTTTTT 83059 29 100.0 32 ............................. GCAGTTCGGAGACCAGGAATATACCGCCGCAC 83120 29 100.0 32 ............................. CCGACTCATATCAGGTAGCGTGCGCTAACGCT 83181 29 100.0 32 ............................. GAACAATGGCTGACAGAAGCTGCGGAAACGTA 83242 29 100.0 32 ............................. CGGTTGCTACCGAACTGGAGCTGTGGGCGCTG 83303 29 100.0 32 ............................. CACTGGATTTGAATTATTTATTTCACTTTCAA 83364 29 100.0 32 ............................. GACTCGGTCTGTTTTTTGATTTTGGCAATCAG 83425 29 100.0 32 ............................. GACGTCGCTATTGATCGGGAAAAGGAGCGTCG 83486 29 100.0 32 ............................. ATCCGCTCCATGTCTTCGGGCAGTTGGCTACA 83547 29 100.0 32 ............................. CGCATTATGATAAAGTTCCCGCCCGTAACTCA 83608 29 100.0 32 ............................. TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 83669 29 100.0 32 ............................. AGATGGTAAAGGTGCTGGTCGCCGCGACTGCT 83730 29 100.0 32 ............................. TCGAAACTACGCACGCCGTGTGCCGTGGGGAG 83791 29 100.0 32 ............................. GCCAGCGCTGGCGCGCTCGCGAAATGGGAACC 83852 29 100.0 32 ............................. TGATTATTCCAGGGAGAGGCGGACCGAAAAAC 83913 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 83974 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 84035 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 84096 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 84157 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 84218 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 84279 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 100603-101669 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBE01000004.1 Salmonella enterica subsp. enterica serovar Mgulani strain BCW_2732 NODE_4_length_209629_cov_4.87696, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100603 29 100.0 32 ............................. AGGACATCGGGTCGCGGGTTCAGATTATCCAG 100664 29 100.0 32 ............................. ATATTGATGTAATGACGCGACTTTGCACCAGT 100725 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 100786 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCATTC 100847 29 100.0 32 ............................. CGCAAACAAGACTGGCAAATACAATTAGGTGC 100908 29 100.0 32 ............................. CTCGACGGCGACCCAACGCAACTACCAGATCA 100969 29 100.0 32 ............................. AGTTGGATAAAGAGGCGCAGGAGAGAGAGCAG 101030 29 100.0 32 ............................. CCAGGTTAACAACTGCCAGATATTTGGCGTGC 101091 29 100.0 32 ............................. ATCGTTGTCGTTCGCGTGGCTGAGGGCGAGGA 101152 29 100.0 32 ............................. CAAATACGTATACCGATAATGCATCGGCTCAA 101213 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 101274 29 100.0 32 ............................. ACCAATAACAAACTAACAGGTGTAGAGCACAA 101335 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 101396 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 101457 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 101518 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 101579 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 101640 29 93.1 0 ............TC............... | A [101667] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGAGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //