Array 1 194652-196021 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZE01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain J364 NODE_3_length_271011_cov_78.381900, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194652 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 194713 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 194774 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 194835 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 194896 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 194957 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 195018 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 195079 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 195140 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 195201 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 195262 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 195323 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 195384 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 195445 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 195506 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 195567 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 195628 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 195689 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 195750 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 195811 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 195872 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 195933 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 195994 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 212154-213325 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZE01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain J364 NODE_3_length_271011_cov_78.381900, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 212154 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 212215 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 212277 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 212338 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 212399 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 212460 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 212521 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 212582 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 212644 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 212747 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 212808 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 212869 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 212930 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 212991 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 213052 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 213113 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 213174 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 213235 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 213296 29 96.6 0 A............................ | A [213322] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //