Array 1 3707-3322 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCLR01000125.1 Lactobacillus helveticus strain UC1285 125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3706 29 96.6 32 ............................C TACCATTCGCTTTGCTTCAGATTCCGCATAAT 3645 29 100.0 32 ............................. GGAAAAGAATGCGCAACTAAGAGATTAAAAGA 3584 29 96.6 32 ............................C AAGTGCAAAATTGGCTTCAAAAATTCTGTATA 3523 29 100.0 32 ............................. TATTCTTTTATGGCCATATTTCATTGAATTAA 3462 29 72.4 21 ...............CCT.CT...G.GT. GTGTAGCCCAACATAGCCGTT G [3449] Deletion [3413] 3411 29 93.1 32 .....T......................C ATTATTGCCGTCACCAGTTTTCCAGTCACAGG 3350 29 93.1 0 ...........................TA | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.1 30 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : AAAGCTTTCAAGTGCTATAATATAGTTCATATATGAACTAATATTTTACAAATTATGAGGAAATGAAAATGCAATTATCTAATAAGACTTTATCCTTATGGGGTAAGAAAAATGTTAATGATGACAATGAAAAATTGTGGTTACCATTAATTGCGCATTTAATTGATACAAAAAATGTGATCAATTGGCTATATAATCATTGGATCAATGATGGTCAAAGACATATTTTGCAACGGAATTTTGAAGATGAAGATATAGTTCAAAATTTAGTGAAGTTTTTGGGATATATACATGATATTGGAAAGGCAACACCTGCTTTTCAAATTAAACAGTCATATATCAATAATGAAGATTTAGATCAGAATTTAGTAGAAAAATTATTGCAAAATGGCTTTGATGGTCTAGATAATTCAAAAATTAATACAAGTAAGACGCCTCATGCATTAGCTGGAGAAGTTATTCTAGAAAACAACGGGTTAAATGAAAGTATAGGTGCAATT # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37894-38349 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCLR01000031.1 Lactobacillus helveticus strain UC1285 31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37894 29 100.0 32 ............................. AACAATTTATTTTTTTCTGCCATGTATAGAAA 37955 29 96.6 32 ............................C TCATTGTAAGTAACTTCAGTGCCAAAAAAGCT 38016 29 100.0 32 ............................. ACAAGCTAACACCTACAACCCTAACCACATTG 38077 29 100.0 32 ............................. AAAAGGCAAAACTAACTATAAGACAAATAAAA 38138 29 100.0 32 ............................. TTAATTTACCGCCTAAACCAAAACACGATTGG 38199 29 96.6 32 .......A..................... TCAGTTGAAAGGAATGCACGGCTTACCTATCA 38260 29 100.0 32 ............................. AGCATTAGTAGTATATGTGTCTTCTTGATATG 38321 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GTTTTCTCCACGTAAGTGGAGGTGATCCT # Left flank : GACGCAGCGGTAAATCATGAAAAGCTGCCTGAAATTGAAGAAAATGATCGTTCAGTGTTAGGCGTAGTTGTCTGCAGCAAAGGCTATCCAACGCATCCGGCTCCTAATGTGAAGATCGGCAAGTTGCCTGAAGGTACTAATACCTATATCGATTATGCCAACGTGAAAGGTGATTTGGATAATCTGACAGGTGATGGCGGCCGCCTGTTTATGGTGATTTCGGAAGCTGACAATTTGGTCCAGGCGCAAGATAATGTTTATTCATATTTGAGCAAGCTTGATCTGCCAGATTGCTTCTACCGCCATGATATTGGCAATCGCGCTTTGAGAGATTAGATGTATGAAGAAAGTCCCGTTTGGGGCTTTTTTAGTTTGGTGAATATTTATGGGAGTGAAGAATAAGAAATACGCTGGTATAATTATTGTTGTATAAAATACAAACTGAATGAATTTCAGCTTTTTATTAATTAAAAATGGCTTAACGACGGGATTCTTTTAGT # Right flank : TGAGTAAGGCAAAGTTAGACAAGCTTATAGATAAGTATGCGGGTTGGTTTATGGATAAGTTCTTATTACACTTTAAAACAATTTTAATAGCTGGTGGGATCCTTGTGATTATAGAACAAATCTACATGTTTTTAGCTAGCTGCTTAAGTAAATAAACAGGAGGTAAACAAAATGAGGAAACAGGCAAGTACACATAGTCCTAAAGAGCCTATGAGTAAAATAGTAAAATTGAGTAACTACCAGTTTAAAGTGCAGCGCGTAGGGCCAAACCTATATCACTTTATTCCTATAGACTTTGACCACCTGCCAAATGTGCAACCCTTTATAGCCATTGATAATAGCTATTGGCTACTTCAGTGCAAACCTGAAGAGTTGGAAGGCTATATAGTAAGCTTATCTAAAAAAATAGACACTATGGACCTAGAAAGTATGGACCACTTCTATGCAAGACTGGCTAAAAATAGCGCTAGCCCTTTACACTGCGAGCCGGTAAAAGCATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCACGTAAGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1315-309 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCLR01000073.1 Lactobacillus helveticus strain UC1285 73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1314 29 100.0 32 ............................. AATTCATAATATTGTTGAACAGCTAAAGGCAA 1253 29 100.0 32 ............................. AATGCCAGTATTTGATTGGAAAAATGCTCCTA 1192 29 100.0 32 ............................. TTAACCAAACATAAGATACCTAAAATGGTTGG 1131 29 100.0 33 ............................. AGTCAATGGTCTCAACGTCTAGCGTTATTTTTA 1069 29 96.6 32 ............................C GGCTAGATTTACCGCCGTTCGATTTTCTCCAA 1008 29 100.0 32 ............................. GTTTGTTCAAATGTGGGAAATTGACTATCAAA 947 29 100.0 32 ............................. CATCTATTACGCCTTCTTGTTTCTTGCACTTT 886 29 100.0 32 ............................. CTACCGCTTGTTTTTACCTTAACGTCTTTGTC 825 29 100.0 32 ............................. TATTTTGGTGTTACGACTGATTACTTATTAGG 764 29 100.0 32 ............................. TATTTTGGTGTTACGACTGATTACTTATTAGG 703 29 100.0 32 ............................. GAAAATCAGGTTTACCAGGTATATCAGGATCA 642 29 100.0 32 ............................. ACAGGCATTTCACCCCCATTGATGTCCTATCA 581 29 96.6 32 ............................C AACGTTGCAATGCAGATCAAGATCGCCGGTCT 520 29 100.0 32 ............................. ATTCGGCCAGCGTAAGTGTTCTCTTTCATAGC 459 29 96.6 32 ............................C TTGCATAGCGGCAAGGATAGCGTCAGTGTTAG 398 29 100.0 32 ............................. ACCAGTACGCAACGTGCTATTTTTTTCAACAG 337 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATATATATCTAAAAGTAAATGTGAAAGATTTTATCGACTAATTAAAACTGATTATGAAATTCCAACGCATATTTCTAAAATTACGCAATTAACGTCAGAGAAATTGAATCAAAGTGGTGTTGAATTATTTGATGCGCTTGAAGACTTAAAGAAGTTTTTAGCTGATAGATTAATAGTAGGTTATAATTTAAATTTTGATATTAATTTCCTGAATCGTGACTATCAAAAATATAATAATTCCCATATCTTGAATAATTTAAAGGATATATTGCCAATAATTAAGAATAAAAATAAGTTTATTGATAATTATAAATTAAATACAGTTCTTAAAAATTATGGTATAAAAAATGCTGAACCTCATAATGCTTTGTCAGATGCGTGTGCCACATTGGATTTAATTATTAAGCTGGTAGAGCAAGGCGGCTTTTAAAGATAATGAAAGTGATTAAAAATAGAGATTTAGTATTTTGAAAACGGCGATAGAATGGGATTTATTTACT # Right flank : CAATCGACATGGCAAAAGAGTTGTGCATGATGTGTATTCTCCCTAAGTGTATAATTTTTTGCGGTAAGTTGAATAAATAATTAAAAAAGCTCAAATCCTTTGAAATTGGACTTGAGCTCAAACAAAAAGACCAGTAGTCTGATGTTAACGAAAAAAAACACATTAGAAGCTGGTCTTTTATGGAATCTATTATAGCTGATATCGTGAAAATTATTAAGTCTGAAAATAATGTTATTGCCCGTGAAAGGGCATTAATGTGCTACTTCTTTGATCTGATTAGAGAATTGATGACAGCAGCACTAGAAGAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //