Array 1 936701-937867 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027706.1 Pseudomonas sp. CMR12a chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 936701 28 100.0 32 ............................ TCGCCCGGCGCGAGCGCCTGCAGACGAAAGCG 936761 28 100.0 32 ............................ CGCTGAAAAACCGGTGCAGTACGAGCTAAAGG 936821 28 100.0 32 ............................ ACGACGTCACTGTTATGTCGGGCCTCCACCAT 936881 28 100.0 32 ............................ TGCAACGCGGCAGCGCCACCCTAAGCTACACC 936941 28 100.0 32 ............................ ATCATGGTGTTGAGGGTTGTCAGCGTCTCACT 937001 28 100.0 32 ............................ TTCAACTGAATGCCCAGGCGCGTCGCCGCGTC 937061 28 100.0 32 ............................ TACGAAAAGGGCGCGGCGGCAGCCTGGCGCAA 937121 28 100.0 32 ............................ TGTGACACGGCTGAGGTGCCGAGCGAAATCTG 937181 28 96.4 32 .G.......................... AAACGGCAGGTTCGCACCATGCATACCACTTC 937241 28 96.4 32 .G.......................... TCGACAATGTCCGTACGCTTGGCCTGGACGTA 937301 28 96.4 32 .G.......................... CTGGTGTAGGACCATCTGTTCGGCCCGCTCCC 937361 28 100.0 32 ............................ CAGGACGGGCGACACCAGGCGCAGGGCAGCCC 937421 28 96.4 32 ..........A................. AAGACGAATGCAGTCGCGCACAGCTGCGGCTC 937481 28 100.0 32 ............................ ACGTAGCACTGGTAGAGCGTGGCCGCTGTGGC 937541 28 100.0 32 ............................ ATGCACCGCGTGCCTGCCCTGCACTGGAAAAC 937601 28 96.4 32 ...........T................ TCTACGACGAACCCCGGCCAGATTTGGACGAT 937661 28 100.0 32 ............................ AGGTCACTGTCACACCTGGTACGGCGTTGCCG 937721 28 100.0 32 ............................ ACCGAAAACGAACTTGACGCAACGATCACGCT 937781 28 100.0 32 ............................ CAGGCCGCCAAAGCCGCGACGCTTCTGGGATG 937841 27 92.9 0 ......................-.C... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.7 32 GTTCACTGCCGCATAGGCAGCTAAGAAA # Left flank : GGAGGTGTCCGATGAGATCACCGAGCAGGCCAGCGGCGTCGAGCGTGGGTTGATCTGGTCCCTGGTGCATTCGGTGGAGATGGCTCGCGGCGTGGTGGATGCCTTGCTCGATGGCCATCGTCTTTCCCCTGACTGAATACGCACTACCTGTGGCGAGGGAGCTTGCTCCCGCTGGGGCGCATAGCGACCCTAAACCTGATAGAGGCGGTCGCCTCGATTGTTCGGGTGGAATTCAGCATCCTCGCCACGGCCACAAACCGTGTCAGGCATAGGCCTAGCGCTAAATTGCCGCTTATCGTTGTTGGAAAAGAACCACTAACCTACTGATGCCAAGACGACTAGAGCGCTATAACTACCCACATGGTGCCGACCCTCTTTTTGAGGTGGTGGGGTACGCCTTGTAAAATCAATAAGTTACAAGCACCCACAAAAAGAGGGTTAAACACGCTGTAGAGTCGTATCTTTCTTTAAAATCTTGGGGTTAGAGTAGAAGTGCTCTA # Right flank : AGCCCTCAACGGGAATCTAGCCCCAGACACCAGATCAGAGAGGCAATTGCCCCTACACCTCAGTTGCACGTCACTGGAACGCACGCATGAAACACTCCCTCCTCTTGTCCTTCTGAGGCTATGCCTGGCTCCGAACTAGTCATGTGATAAATCTGAACTTCCAGTACGACATAGACGAACATCCGGACATTGCTTATAACCCTTACCGCCCAATGGACGACACAGCAGGCGGTTCTCTCTCATGGAAGACATCCGGTCCGCAGATCTAAAAACGATTCTTCATTCCAAGCGCGCCAATATCTATTACCTGCAGCACTGTCGGGTACTGGTTAATGGTGGCCGGGTCGAATATGTAACCGATGCCGGCAAACAGTCGTTGTACTGGAATATCCCGATCGCCAATACCACGACCGTGCTACTGGGTACTGGCACGTCAGTTACTCAGGCAGCCATGCGCGAACTGGCCAAGGCGGGCGTGCTGGTGGGGTTTTGCGGGGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 946679-947721 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027706.1 Pseudomonas sp. CMR12a chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 946679 28 100.0 32 ............................ ATGTCGACCTCTTTCAGCATGCCGCGAAGGGT 946739 28 100.0 32 ............................ ACTTGTGGCCGTAGAGAATCGCGTCCATGACG 946799 28 100.0 32 ............................ AAAGAGAGGCCTGTTTACGACGCTGGGCGGCG 946859 28 100.0 32 ............................ TGCCCGGTTCCGCTCCAACTGGGTATCAATCT 946919 28 100.0 32 ............................ TGGCCGAACGCCGCGAGACGTCCGCCCAGCTT 946979 28 100.0 32 ............................ AGCGTCAAAAGCTGAATCAGGGAAGTACTACA 947039 28 100.0 32 ............................ AAACAAGGCGACTACCTGACCGAGTTCAAGGC 947099 28 100.0 32 ............................ AACAGCGCCTCTGGAGACGCCATCGGCTGCCG 947159 28 100.0 32 ............................ AAGATGATCAGCGTTGGCATGAAGGTGATGCG 947219 28 100.0 32 ............................ ACCCAGCGCAGCCAGGGCTGATTGGCCTCCTT 947279 28 100.0 32 ............................ GGGAAGATCGCACCATAGCTGGAGGACACGCC 947339 28 100.0 32 ............................ GGCTACAGCCAGGCCGTGTCGGCGGCAGGGCA 947399 28 100.0 32 ............................ CCCAGGGAATGCTGATCCTGGTGCATCCAGCG 947459 28 100.0 32 ............................ AGGAAATGTCCCATGGCGAGCTGATGGACAAA 947519 28 100.0 32 ............................ ACGAACGGCACATTCTCCAGCTCGGACGCAGC 947579 28 92.9 31 ...........C.C.............. CCAGGCCTTCAGCGTTCATCGGTGCTGTTCA 947638 28 71.4 27 TC...T.....A.C......G...A.C. CAATCCATCATCAATCCATCGGCACCC G [947640] 947694 27 85.7 0 ...-.........G........G...G. | T [947715] ========== ====== ====== ====== ============================ ================================ ================== 18 28 97.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGCCCTGGACCAGTTGCTGGCCATCGATTGGCTGACCGGCATGCGTGACCATGTACAGATCGGCCAGCCCTGCTCGGTGCCGACGCCGGTGCAGCATCGCCATGTCAGCCGGGTACAGGTCGACAGCAGCCCGGCACGCCTGCGTCGCCGCCTGATCAAGCGTCATGGGCTGACCGAGGACCAAGCCCGCCAGCGCCTGCCCGACAGCGCGGCGAAACGTTGCGACCTGCCGTTCGCGGTGATGCGCAGCCATACCAGCCATCAGCTGTTCAACCTGTTCATCCGCCACGGCCCGTTGCTTGAACAACCACAGCCCGGCACGTTCAACGGCTATGGCCTGAGCTCCAGTGCGACAGTGCCCTGGTTCTGACCCTTTTTTCCGGGTGCAGTGGAGCGCTTTGTAAAATCAATGACTTACAAGGCGCTTCAAAAAAAGGGTGTACAGCAACTTTTAACGGCCTTTCTTTTGAGATTCAGGAGGTTATAGAGAAAGTGCTCTA # Right flank : ACTTGATGCACTCGTCGCTGGCTGGCCTGGGACTCCCGGGCCAGGACGCGGCTTTGTCACATCCCCTTCATCGGCGCTGGCTAAGGTGGCCTCTTTTGACCATGTCAGGGAGTCACCATGAGCGAGTTCAACCTCGGCCGTCGACGGATCATGCAAATCGCCGGGGCGGGGATGTTGATGCCCAGCCTGGCGCCGGCGGTGATCGCCTCGGTCAAGGATCGGCCCAAGCTCACCGATGGCGTGCAGTCCGGGGACTTGCAGGGCGATCGGGCGATTATCTGGAGCCGCAGCGACCGCCCGGCGCGGATGGTGGTGGAGTGGGACACCCGCAGCATGTTCACCAACCCGCGACGCCTGGTCTCGCCGCTGGCCGATGCCCGCACCGACTTCACCGCCCGGGTGGACCTGAGCGGGTTGCCGCTCAACCAGGCGATCTTCTATCGGGTGACCTTCGAGGACGCCCGCACCGGGGTGGCCAGCGAACCCTGGTTCGGCCATTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //