Array 1 18176-17747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDA010000011.1 Bacillus pumilus sxm20-2 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18175 32 100.0 32 ................................ TTTCTCCTAAATAATCATATTTTTTCAAAGCA 18111 32 100.0 34 ................................ TCTTTTACATTATCGTCAACAATGAATGGAAGTT 18045 32 100.0 35 ................................ CAGTTGTTGTTATTGTGGGTCTGGCAGTGCCTATT 17978 32 90.6 35 ........C..T......A............. TTATGTATTTCCACTACTGTTCCTTCCCCATATAA 17911 32 93.8 34 .........A....A................. AATTGCAGAGTCTATACCTTGCACTTGTACTCTT 17845 32 93.8 35 ........C..T.................... ATTACAGTTTCATATCCCTCCATAGCTCCGTTGAC 17778 32 93.8 0 ........C..T.................... | ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.0 34 GTCGCACTTTACATGAGTGCGTGGATTGAAAT # Left flank : GGATTGAAATCTTCAGTGTATAGTTCGTTGTGTTGAAAAGGGTCGTCGCACTCTAAATGAGTGCGTGGATTGAAATTCTAACTTTTCGGGTTCTTTTACAGATGTCCCGGTCGCACTCTACATGAGTGCGTGGATTGAAATCTTGCTTGGATATGTCGGTTTATTTGGTGTTTCAGGTCGCACTCTACATGAGTGGATGGATTAATAATTGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTTTGATTAACAAGTTTCAATATATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATTATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : AACCTTTTTCAATCCATCAAGGATAGCCAGGATGGATTGAAAATGTCTTGGATATCGAGATAGCGCAGTAATTCGTCGTCACACTCAACATAAGTGCATAGTCCACAGTTTCTGCGAATTACATAAATTCAAATATCTATCCCCAAAAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACGAAAGGATAGTGACCTTTGCTGCGGTAGCGTAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAAGCTGAAATGTTTTCGTCTTGTTTGGCAATTTTCATAATTTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGACGACTTCTCCATTCATGCTG # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 18831-18467 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDA010000011.1 Bacillus pumilus sxm20-2 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 18830 32 100.0 32 ................................ TCTAAGGGGGATAGCTGTTTTTTTGCCCTTAT 18766 32 100.0 37 ................................ ACACTTCAGCGTGCCGTCAGATTGATACTGAAAGTAC 18697 32 100.0 34 ................................ CTTCAGTGTATAGTTCGTTGTGTTGAAAAGGGTC 18631 32 96.9 33 ...........A.................... TCTAACTTTTCGGGTTCTTTTACAGATGTCCCG 18566 32 100.0 35 ................................ CTTGCTTGGATATGTCGGTTTATTTGGTGTTTCAG 18499 32 90.6 0 ...................GA......A.... | T [18470] ========== ====== ====== ====== ================================ ===================================== ================== 6 32 97.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AAGTAGCCGTGCTTTCACCATAGTTTTGCGTCGCACTCTATATGAGTGCGTGGATTGAAATCTCTCAATTTGATAGTTAACTTGTTGCTTAAAAGTCGATGGTTCAGCTTGATGTTTTTTTCAAATCGCACTCTATATGAGTATGAGGAGTAAAATTCTTATCAGAAGGTAGCTTGAAAGATATATTGACAATTGCGCTTGATATAGTTGTGAAAAACAAAACTCTGTCTCAGCCTTTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTTTAAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTAGCTATCATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTTTGATTAACAAGTTTCAATATATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATTATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTTTACATGAGTGCGTGGATTGAAATTTTCTCCTAAATAATCATATTTTTTCAAAGCAGTCGCACTTTACATGAGTGCGTGGATTGAAATTCTTTTACATTATCGTCAACAATGAATGGAAGTTGTCGCACTTTACATGAGTGCGTGGATTGAAATCAGTTGTTGTTATTGTGGGTCTGGCAGTGCCTATTGTCGCACTCTAT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 19433-19175 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDA010000011.1 Bacillus pumilus sxm20-2 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================================================== ================== 19432 32 100.0 34 ................................ AATTTCCTCCGGCCATTTTTTTGTTAGTGATGGT 19366 32 100.0 33 ................................ TTGTAAGTAGCCGTGCTTTCACCATAGTTTTGC 19301 32 100.0 63 ................................ CTCTCAATTTGATAGTTAACTTGTTGCTTAAAAGTCGATGGTTCAGCTTGATGTTTTTTTCAA 19206 32 81.2 0 A.................AT.A...G.A.... | ========== ====== ====== ====== ================================ =============================================================== ================== 4 32 95.3 44 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GATGCCTGAGACGGTAGGAGAAGCATTCAAAGTGGATGTGATGACACCACATCATTCAGACTACAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGGCCCTCGAGACGATGACTCACCAACACCTATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAATCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCGGGTTATGGAAGACTTAAAATGGACGACGTCATCTAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACGAAAATGGTAAATGATGTATATTTTTTAGAGAGGAAAACAAAATTCTATATAGAAACTTGAGGATTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TCTTATCAGAAGGTAGCTTGAAAGATATATTGACAATTGCGCTTGATATAGTTGTGAAAAACAAAACTCTGTCTCAGCCTTTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTTTAAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTAGCTATCATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTCTAAGGGGGATAGCTGTTTTTTTGCCCTTATGTCGCACTCTACATGAGTGCGTGGATTGAAATACACTTCAGCGTGCCGTCAGATTGATACTGAAAGTACGTCGCACTCTACATGAGTGCGTG # Questionable array : NO Score: 7.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:-0.74, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 27852-27558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDA010000011.1 Bacillus pumilus sxm20-2 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 27851 32 100.0 34 ................................ TAGTTTGTTCCGCAGGCACAATTGTTACTGTATT 27785 32 100.0 33 ................................ TTTATTCAAGTTTTTCTCCTCCCGTCCCTTACA 27720 32 100.0 34 ................................ ATAATATTGCCCGATCCTGCATAGGCGTATCCTC 27654 32 96.9 33 ...........T.................... ACAGTAGCCGTATTAATTACAGGTCTTATATTT 27589 32 81.2 0 ...........T....A..T.A...A.A.... | ========== ====== ====== ====== ================================ ================================== ================== 5 32 95.6 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCGGCTGGGCGAAACGAGACAAAACATCTCAAACATTCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTTTACATCAAACTCATCGAAAAAGTAGACCGGCTGATTTACCAAGAAGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTTATTCGACAAAACTGGGTAAAAATGTATATTTCATGAAGAAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGAGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAATTGAGGGTTTTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATAAGAATCGCTTTTGTTTTCTTTGCGATAGTTAGTGTCGCACTCTACATGATTGCGTGGATTGAAATGATTTCTTCGTCTGTTAAATCTTCATAGTATTTGTCGCACCCATATATGAGGTGCGCAT # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //