Array 1 236664-239470 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032931.1 Levilactobacillus brevis strain CD0817 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 236664 36 100.0 30 .................................... AGCTGGATGGCCAGCACTACGACGCCTATC 236730 36 100.0 30 .................................... TGAGACGACTAAACGTTTTCTGAAGTGGTT 236796 36 100.0 30 .................................... TTGTCCCAATCAATAGCAAGATTAATTTTA 236862 36 100.0 30 .................................... CTTCCGTAGTTTTATCTGCAACGGATAGGT 236928 36 100.0 30 .................................... GCCCTGGTTGCCGTCAACAACCCCGTAGGC 236994 36 100.0 30 .................................... GGTGTTGTGGGACACCGAAGTCTTTAGAGT 237060 36 100.0 30 .................................... ACAAACAGTGCTTGCAGTAGGCTTACAACG 237126 36 100.0 30 .................................... TCAACTCGTCAGATTTGTGCCATGATATAC 237192 36 100.0 30 .................................... GCCAAGGGCTACTTGCGGTTAAACGGATGC 237258 36 100.0 30 .................................... TTAATCTCCTCTTTTTTGGGTTTAAGTATG 237324 36 100.0 30 .................................... TGTGGGATCACCATGGGAGTCCCACCAACC 237390 36 100.0 30 .................................... CAAAGAGCACTCGCAAGGACTTGGGAAAGC 237456 36 100.0 30 .................................... CCACGGGAACCGTTACTGGTGTGTGCGTCG 237522 36 100.0 29 .................................... CATCCCCATCATGATGGCCTTTCAGAAAT 237587 36 100.0 30 .................................... ACGCTGTTCGGAGAATCTGCGGGGATGTAA 237653 36 100.0 30 .................................... TAAGTCAAACTACACCGGGCGCCTGGCATC 237719 36 100.0 30 .................................... CAATGACCTGATTGACATCGACAATTACCT 237785 36 100.0 30 .................................... GGACAATTTAAGATATGTTAAGAATCATGA 237851 36 100.0 30 .................................... AAAAATATAAGACAAGAAATAAAGAGACTT 237917 36 100.0 30 .................................... GGGCCGTGGGTGGGACAAACTCACGGTTGC 237983 36 100.0 30 .................................... ACTGGGTTTATGACTGTTACACTTTATGGC 238049 36 100.0 30 .................................... ACCCGAGCCAAAACCAGTGCCTGGTTGGGG 238115 36 100.0 30 .................................... GCGGCGGTGTCGGCCATGCTTTTAAGTGGG 238181 36 100.0 30 .................................... CCGGCGGGCGTTGAGTACGATTTGGCGGGG 238247 36 100.0 30 .................................... GGGAGTTATTCTAGTACCATCGAAAGAATT 238313 36 100.0 30 .................................... GCCAAGTAATGCAAGACGCCCACATCGTTG 238379 36 100.0 30 .................................... AATCAAACTTACTGGAACGCTTCTTAGGGT 238445 36 100.0 30 .................................... ATTGCAGGTGCTTTACGTAGAGGCATACAA 238511 36 100.0 30 .................................... TCACCGGGTGCAGTTCGATGTTGCGCTTGT 238577 36 100.0 30 .................................... TTTATCTAGGGGGGTGCAGACATGATTGAT 238643 36 100.0 30 .................................... ACCAATTTGTCCGCATCCCCAAATGCTACA 238709 36 100.0 30 .................................... AAGAAGAATTCAATCGCATGGGTGTTTCTG 238775 36 100.0 30 .................................... TTACGGGCGTAAGTCGCCTTTTGGTTCCCT 238841 36 100.0 30 .................................... CGATGCTTCAGTCTTTTAATCCACAGATGA 238907 36 100.0 30 .................................... CGCCGTATGGGCTTGCCCCTGTGCTGGCTA 238973 36 100.0 30 .................................... TAAAGTTAAACGATTCGTTTAGTTGGAAGG 239039 36 100.0 30 .................................... TCGGTTTTAAGCCGACGGAGGAAGACGTAG 239105 36 100.0 30 .................................... CGCAATGCCCGCAAGCACATGTATGGAGGT 239171 36 100.0 30 .................................... CATCCCCATCATGACGGCCTTTCAGCAATC 239237 36 100.0 30 .................................... CGCAGTAGTCAAACAGATTGACGAGCAGAA 239303 36 97.2 30 ......................A............. TACTTGTGCACCCGCGGCATATGCTTTTCC 239369 36 94.4 29 .........A........................G. TACTGCCCTGCAATTCCATAAGGGGCTGT 239434 36 72.2 0 .T....A..A..T..C......A........TCGT. | G [239458] ========== ====== ====== ====== ==================================== ============================== ================== 43 36 99.2 30 GCTTTAGAAGTTCTGTAAATCAGTAAGGTCAAGAAC # Left flank : GACGTTGAATTTGAACGATCTATTTCAGCGTAAGTTGCAGGCTCAACTCGTCAAACTGTTAGCTGATAACCAGACGGTAAAATTAGCCGATGGATTACGTGAGCTTCTATCACAAATGTTAGCGGATAGCTACTTAATGGACGTGCCAATGGAGTTACCAACAATTCCTGAGATTGCCAAGTTAGTGAAATTCAGTGGAATTCAGCTGGCACCTGACATCCAGGAAAATCCGTATGGTATAATCGAGACGTTAGTTAAGGTGCTTTTAGAGTTGCATGATCAACACATGATTGTTTTGACCAATGTTAGCCATTATCTTCAGGTCAGCCAGCTGAAAATGTTGGTGAGGTTTATGGCTAACGTTGATTTGCCGCTTCTTCTAATTGAATTTTCACCTATTCGTCGTAAAGACTACTTCGGGGGATGCGATTACCACTACATCGATAGCGATTTTGTCCTCTGGTAAGAATTTATGATGAGATATTAGTGTGAAAATAACG # Right flank : CAAAAAAGGGAACGCCAGCCAAAGCCAGCGTTCCCTTTACCTATACCTAAAAATCAATTACCCAGCCGCATAAGGCACGGGTTTGCTATAGTAATACCCCTGCGTCATCCCGGCGTTGTACTGCTTGGCCAGGGCGACGTCGTTGGTATCTTCAATGCCCTCCAGCGTGAAGCCCAGCTGATACATGTCGGCAATTTTACGCCAGGCCTTTAAGCTTGGCAGCAATTCCTTTTGCCGGTGCTGCAGCCGGAAATTTTGCATGGCGAACTTGATGCTGTCCATGAAGGGCAGGACGTCTTGAATCTTGGGACCCCAGGGATTATCCGTCCCGACATCATCAAGACTCAACTTAATGTCAAATGACCGATACAACGCAACGAAGCGGTGGAGTTCTTCCAAGCTTGGCGCCTCAGTCAATTCGACAATCAGATTTAACTTTTTAATGGATTTTTTTAAGTGAATTAAGTGGCCAATCGTATGGATGTCTGAGAACTGCTGGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAAGTTCTGTAAATCAGTAAGGTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 494102-493890 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032931.1 Levilactobacillus brevis strain CD0817 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 494101 29 100.0 32 ............................. TTTCTTGGCGGGAAGGCGTGTGTCTTTTTTAT 494040 29 100.0 32 ............................. TGCAATAAGGCATTGAAACAAAAGCGTGTAGA 493979 29 89.7 32 ...T......................T.T GCCATTTGGCTAGACTTGGACACTGAAAAAGT 493918 29 72.4 0 ...T........AAC..A...C....T.A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 90.5 32 GTGGTCCCCACAGGTGTGGGGGTGATCCC # Left flank : CGTTGGCATGCCGTTCTTAAAGATGACCAGTGAAGGAATGCTCATGATTCCCAGGGATTGCGCCAGCTCTTGGTTCTGGTCAACGTCCAAGGAAGCAAACTTCACCTGGTCGCCATACTCCTCGTCCAGCTTTTCTAAGACTGGCGTTTGCATCTTACATGGCCCACACCAAGTTGCCCAAAAATCGACGACCGTGACCGCCGTGTCGTCCCCGATGTGTTCAAAATCTTTGCTTGTAATGGCTTGCATCTGAAAAATTCCTCCTCTAATTTAATCAATGCTCATAGTATACCCCAAGGGGTATGGATTTGCCAAGGAAAATGCGTTACTCCTGCTGGCAAGGGCTTTTAAACCGGCATATGGCTCATGAAATTCTTAACGAAAACGTCTTGAAATTTAGTTGTATAAGTCTGCTGAACACTGTATGATGGGTTTAGCAAGTTAAACAAAATCCGGGATTTGTGAAAAATAGAATGCCGGTGTGACGGCGTTTGGTTAGG # Right flank : TCCAAGCAAAAAACGCCTCCCCAAACGGAAAGGCGCCTTTCACACAATGTTTACTTTTCTTTGTCCGCAAATTCAGGGTCAGCGTCCATCCCCGCCGTTAAGCGTGGCTTGTTGTTGCCGCGCTTGGTTTCCTTTTCCACGGCCTGTTGGGCTACCAAGTTCAGGTAGTTAAATGGGTCGTCGAAGTTCGGGTTGAACAGCATGTCCACGAAGGCCAGGTCGTCAATCGTGTTGCGGTTTTGAATCGCAATCGAAATGGCGTTGGCTGATTGGGCAACTTCATGCTTACTGAAGAGCTGTGCCCCCAGGATACGCCGGTTTTCCCGGTTGTAGACCAAGTTGATGGTCAAGTCATCCGTGGATGGCATGTACCCTGGCCGCCAAGTCCCTTCGAAGGTGACCATGTCGGCATCTAAGCCCGCGTTGACCGCGTGATCGATCGTCAGCCCAGTTGAGGCCAACGTCCGACCGAAGATCTGCATCGCAGACGTGGCTTGCGT # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCACAGGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.60,-10.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2175379-2174985 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032931.1 Levilactobacillus brevis strain CD0817 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2175378 29 100.0 32 ............................. CGGGTAAATCGTGATTACCAGCGTGATAATGA 2175317 29 96.6 32 ............................C AGTAGCTGATTTTTCAGTTCAATTTTCATTTA 2175256 29 100.0 32 ............................. GCTCGTGCCATGCATGTCACCCATGCTAGTCA 2175195 29 100.0 32 ............................. CAACGTCTAATAGATTATTGACTTCTTCAAAA 2175134 29 100.0 32 ............................. CTGCAACAAACACTGGAAAGCGGCGGGTTTCC 2175073 29 96.6 32 ............................C CCGCGTTGAACTGCCCTTAACTGGGCTTTTAT 2175012 28 93.1 0 .......................-..T.. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : ATCGTTAATGATTTGCTGAAGACAGGGGCGTTGGATGATCAAACGCCACGCTACTCCAGTATTCCAGGTCGCCGGGTGGGGAACTTTAAGTTTGTTATGTTGAATCAACAGTTCCAAGACCTGGGTGCCCAAGAGGACTTGCCAGTGTTAGACCGCCTGTTGATTGGTGGTCGGCTATTGCTACAACGAATCTCGCTATCGCCACAACGCTGGTACGGCTTAGCCTTCAGCGATGTCGTCGAGGAACGGGTACCGCTGTTTATCGGCCAGCATCCGGACCGGAGTTTGAAACGGCGTGAGTGAAACCAGGTGGCCTTTTGTTCCGCATTTCAACAATTTAAGTTAAGAGATACTAATGCGTTTGGCTGTTTTTCCAAGCGCCTTTTTGGTCCTAGAAAATGGATTGCCAAAGTCAGGCAGCTAGTGTATGCTAAATTCAAGTTAAATGAAAACCAGACTTTTCCAATTTCAGGATCCCGGTGTGGCGGCGTTTGTTTAGT # Right flank : AAAAAATAATTTTCAGTACAAAAACCCACCAGCATTGATTTGCTGGTGGGCCTTTCGTATACCATAATACGAGCTAAACAACTACCCCCACAAAAACTCTTCCATATCCTGTACAACTTCAGGGTTCCGCCGTGGTAGAGCGCCGTGGGCGGCGTCATCGCCGGTGAGCTCAATTTCCTTAAAGGACTTCGCACGGCTGCCGACCAGGTACTTGAGTGCGCGGGCGGAAGCAACTGAAATGGTGCCGTCAGTGTTGGCGCCGTTGCCTAAGTCACCGTAAATACTGAGGACCTGGAGCTGATTGTTGGGAATGTTCTGCCGATGATTGACAAGTTGCTGGAAAGTCGGTGAGAAACGGCTGGGACGACCATTGGCCGCGTTAGTCGTGTGGACTGACCAGGGATTCATGACAATGTTACCCAGCATTGGTGGGGCAATAGCAACGTACTTTTGGAGCTGTGGCAAGCGTTTGCGTTGACCGAATAGCGTTTCGTACATCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.60,-11.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2402530-2401829 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032931.1 Levilactobacillus brevis strain CD0817 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2402529 29 100.0 32 ............................. GTATAGGTTCCATCAATGAAAAACTTGGTAGA 2402468 29 100.0 32 ............................. TCCGTTTCATTCAAATAGTGAACGCTGCGAAC 2402407 29 100.0 32 ............................. CAAACGTGAGTCTAACGGCGATCCGAAAGCCG 2402346 29 96.6 32 ............................C ATGAGTAAGTCGACACTGTCAGCAATCCGCGA 2402285 29 100.0 32 ............................. AATCGCCATTAGGTACGTTTTACCTTGCCCCC 2402224 29 96.6 32 ............................C AAAGCTAGCTCAAATTCCAAGTCTTCCCGTGT 2402163 29 100.0 32 ............................. GAAAATTTTTGGCATTGTTTCCACATCGCCAA 2402102 29 100.0 32 ............................. GAACCAAAATGGCTTGAAGTAGAGGGTGTAGA 2402041 29 100.0 32 ............................. GGTTCGGATATCTTACAGGTGTCCGGGCCTTT 2401980 29 96.6 32 ............................C ATCAAAGACTTCGCGACGAAAAAGAAGCTAGT 2401919 29 100.0 32 ............................. GTCATATGTTAAAGCCAATCGATAAAATGGCT G [2401902] 2401857 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.9 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : ACGGCGTTCATCATCCTGGTGTCGATGGGCGCCGTGCCAGCTTGGGCGGTAGCTATCATCGTGTGCCGTGAGCTGGCGGTGACCGGGTTGCGATTAATCGTCGTGGAAACTGGTGGCAAGGTCTTAGCCGCCGCATGGCCAGGAAAAATCAAGACGACGACCCAAATGGTGGGCATCATCCTACTCTTGCTGAACAACATCGGCTTTGGCGCCATCAACGTACCAATGGCACTGATTTTCTTCTACATTTGCCTGTTCTTCACGATCTACTCAGGTATCGATTACTTCGTGCAAAATCGCCAAGTGTTTGCGGAATCTTCAGCTGAATAATTGCGAAAAATACGGTTATGTTTCGGGCTGCGGCAATTGTCGCGGCCCTTTGTGATAACTGAAGTAAATTGCGCATCGAAAGCAGATAGGGTATGCTGGTAAAAAAGCAAGTTAAACAAAATTCGGACTTTTGCGAAATTGGAATGCCGGTCTGACGGGATTTGTTTAGT # Right flank : AAAAAGTAGCAGCCAAACCGGCTGTTATTTTTTTACTGAAAAATGATGACTCTTGAGGGCAAAATTAGCGGAATTGGTCTCAGGTGTGGTACGATTTCAGTACAAGTGTTTTTCGCTAATTAACGACCGGTGAAAAATAAATTGAGAAAAATAAAAAAACACGGGAGTTTTTACGGAGTTAACTTTAAGTCACCTCAGGAGGGGTCAGCATGCAAGCGGAAATTATTGCGGTCGGAACGGAAATTTTATTGGGGCAAATCGTCGATACCAATTCGGCGTTCATTGCCCAGGAACTCGCGCAAGCGGGAATTGAAGTGTACTACCATTCATTGGTGGGCGACAATGCTGATCGACTGACTGCGGTGGTGAACCAGGCCCGTTCGCGCAGTGACCTGGTGATTATCAGCGGTGGCTTAGGACCGACCAAGGATGATTTGACCAAGCAGACCGTGGCCCAGCTATTGGGCGTCAAGCTAGTAGAAGATGCGCCAGCAATGGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2421720-2420896 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032931.1 Levilactobacillus brevis strain CD0817 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2421719 29 96.6 32 ............................T AAGTCCGATGTGAGTCAGGAGCAGGTGGACAC 2421658 29 100.0 32 ............................. GGCTCTTACGCGTCAAAAATGGGCCATAGAAT 2421597 29 100.0 32 ............................. AGTAATGACCCCAATGCTAACAGCAAGAATTG 2421536 29 100.0 32 ............................. ATCCGTCTTCACCACTAACTTCACATAGGCGG 2421475 29 96.6 32 ............................T ATCAGTGACGTTGCGCAAGTAATTTTTGCCGA 2421414 29 96.6 32 ............................T TTCTTCGAAGGCTGCTTTTGTCAAGTTTTGGT 2421353 29 100.0 32 ............................. AAACGGTCATGACGGACAACAAGTTCTTGCCG 2421292 29 100.0 32 ............................. GCTTTAAGTTCGACAAACATATTCAAGCTTAA 2421231 29 96.6 32 ............................T CAAAGCGAGCCACCCCTTGCTATGCTATAATT 2421170 29 100.0 32 ............................. CATGCCGCAACTTGGGAAGCGCTGGCGCTGAA 2421109 29 100.0 33 ............................. GCTGATGATACAGCTCACATCATCCATGAGGTG 2421047 29 96.6 32 ............................T GCGTTAACAGGGTCGGATCTTAAAAAAGTGGT 2420986 29 100.0 32 ............................. AAACGCCGGTGGCAGAGCCAAGAATGGTGGGA 2420925 29 96.6 0 ............................A | G [2420899] ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.5 32 GTATTCCCCACAGGTGTGGGGGTGATCCC # Left flank : AGTGGCGTCACAGACGCTGGAAAGTATGGCGGCCATTAATGATGTGACGTCTATGCCAATCTTGCGGCCGCTGCTGTCCATGGACAAGACGGAAATCATCAAGGTTGCCGAAAATATTGACACCTATGACCTGTCTATCCTGCCATACGAGGACTGCTGTACCATCTTCACGCCGCCAGCACCCAAGACGCATCCGAGCCTGGAAAAGTCCCGGAAGTACGAGGGCTACATCGACGTAGATGGTCTGATGAAAGAGGCACTGGACGGCATTGTCATCACAGAAATCCGGCCAGGAGACAACTACCTCAATCAAAATGAAGATGTCTTCGCTGAATTACTATAAGTAAAAATGAAGCCCAGGTGGGATGACTGCCTGGGCTTTTCGTCATGAGAAATTTGGTTGAGAATCCAGCGAAGTTAAGGTATGCTGGTAAAAACAAGTTAAACAAAATTCGGGTTTTCGCAAAATCAGAATGCCGGTCTGACGGGATTTGTTTAGT # Right flank : GGTAGCCGTACGCCATGATAGCAAGCGCACTGCTATTCCCGCAGCCGGTCAGAACACGTCGTCCAGAGTTTTTCATGATTTTATGGCAAAATGCTTGTCATTACCCCCGGAGTTGCGCGATAATTGGTGTAACTAATCGGTGAGAGCCGATAAACAACTGAAGGGGTTGATCTGCGTGGAAGTCACACGACTCGGCGATACATTCTCCTTGTCTGGTACGTTGCCAGAAGTAGGAGATCAGTTACCAAAGTTTAAGGTATTCGATCAGGAAAATAAGAAGGTCAAGACCGCCAATTTGATTGGCAAAGTTACCCTGATTAGCGTTGTTCCAGACCTGGATACACCAGTATGTACGATTCAAACGCGAAAGTTCACCCAGCAGGCGGATCACTATCCAGATGCGCGTTTTGCCACGATTTCGAACAATTCTATTGCCGAACAGACTGGCTGGTGCGCGGCTCAGGGTGTCGAAAACGTCGATTTGTTGTCAGACGAAGAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 2856454-2856119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032931.1 Levilactobacillus brevis strain CD0817 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2856453 29 100.0 32 ............................. CGAACTGCTCGTTAACTTTCCAGGTAATCACA 2856392 29 96.6 32 ............................C GGATTTACAGGCTGTAAAAAATGATGTGCAAA 2856331 29 100.0 32 ............................. GCATATGCGTCGAAAAGATTGGGGAGACGGTA 2856270 29 100.0 32 ............................. GTCCCGACTTCCACAACTAGAATGAACAAAAA 2856209 29 100.0 32 ............................. TGGGTCGAACAAAGTTTTCCGGCTGAAATTAA 2856148 29 93.1 0 ..........................TA. | G [2856122] ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : GGGTGCCGCCACGGTCATGGCCACGGCTGGTGAAAAGTTGCCGGCTAACGTCAAGGCCATCATTGCCGATTCGGGCTACGCGTCCGTATTGGGTGAGGCGCGCTTCCGGATGCGCCACGAATTTCACGTACCGACCCAACCAACACTAGCGATTGCGGACCAATATTCGCGGCTAGGCGACTACCGCTTGGCGGACGGCGACATTGCCAATCAGCTGCGGAAGAGCCACATTCCACTGTTACTGATTCAGGGGGCCAATGACGAAACAGTACCGGTCGAGAATTTAGACCTCCTGTACCAAGCCGCCGCAGGTCCTAAGCAAAAATATCGCGACCCAATCGCCGCCCACATCGCCACGCGCGAGGAAAATCCAGAGCGGTATGATCGGTTGGTGGCAGATTTCTTGGCACCGTACGTGAAGGCGTCGAGCGAAGACGCAAGTTAAAGGAAAAGTGACTATTTGGAAAAATAGAATCCCGGTGTGACGGCGTTTGTTTAGT # Right flank : ATTTTAGTTGACAATTAGGTTCTAGTACTGTATATTAGTTTCTAATTCGTCGAATTGCTTTTGTTGACGTGCCCAGAGAGGCCGCACGAAGCACGGAACCCAACGACGAATCTTGAGAGTCCATTTTAAATGCAACGCACTTACCCTTTAATTGCTTCCAGCGAGGAGCAAAACGGTCTTGCTAAACCTAAAATTCGACCGATAAATGGCGCTGGGAGTTTCTACCCAGCGTTTTTTTGTGCGCCGAGACAATATATTTCACGGGAGGAAATTATGTCACTACTTCATGTTACTTTGCCAGGATTGTCACTCAAGAATCCCATCATACCGGCCAGTGGAACCGCCGCTTACGGCCAAGAACTCGCACAATACTTCGATTTAAATGCATTGGGGGCATTAGTGATCAAGTCTACGACCTTAGCACCGCGCAAAGGTAACCCACGGCCCAATGTGACCAAGACCGTGGGTGGCTGGATGAACGCTATCGGGTTGACTAACCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.60,-11.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //