Array 1 95425-97792 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJRU01000014.1 Vibrio cholerae HC-61A2 vcoHC61A2.contig.13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 95425 28 100.0 32 ............................ ATCGTCGTTTATTACGTAGGTCGTTGGCAAGA 95485 28 100.0 32 ............................ AACAAATACAGTCTCAATCTAACATTCTTCGG 95545 28 100.0 33 ............................ ACGAAAAGGTAAAGTTGCTAGCGGACAATGTTC 95606 28 100.0 32 ............................ TGTAAGCCCCATCGATAACATCGATGTGTTCC 95666 28 100.0 32 ............................ ATTACGACCGTTGGCCAGATGACATTGATGGT 95726 28 100.0 32 ............................ ACAGCAAGCCACGCTAGCCGGGGTGAGTGAAG 95786 28 100.0 32 ............................ ACCATGATTATGGCAAGGACAGCTACTATTCC 95846 28 100.0 32 ............................ AAGCAGCTTTAGCACTCGCAGAAGTTCGCTTG 95906 28 100.0 32 ............................ TTAAGCAACACACCTATAATTAAAAAATAGTT 95966 28 100.0 32 ............................ GGCAGATTCGAGCGCACCCCAGAAAAACTTAT 96026 28 100.0 32 ............................ CTTACGAGCACCACCATGAGAATGATTAGTGT 96086 28 100.0 31 ............................ TTAAATGCAAATGCCCGTTACTTACTGCGGT 96145 28 100.0 32 ............................ GCTTTGATAGCAACCGTTATGTCCATGCCCTT 96205 28 100.0 32 ............................ CTATAGATAACGGGTAAAACGCTTGGAAAAAC 96265 28 100.0 32 ............................ GCTTTCAGTCTCGCCACTCTCTCAGCTACCCA 96325 28 100.0 32 ............................ CATAAGCTTCAAAGCTTCGGTTTGATTCTTAC 96385 28 100.0 32 ............................ AGAGGAGGCGTTTGCCGAGCTGGGCGTAAATG 96445 28 100.0 32 ............................ ATATAGATCCGGTTGTGTTTGTTGCCTAGTGA 96505 28 100.0 32 ............................ AACAACGCAAACCATCACAACAGAGCAGGTAT 96565 28 100.0 32 ............................ CCTACCTTCTTGTATTCTGGAATTAAGTCATG 96625 28 100.0 32 ............................ ACTTGAAGAGGAGCTTATTGAGAAGCGCCATT 96685 28 100.0 32 ............................ AAATATACAAAGTCGTTCCTGTTTTGTTCTGT 96745 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCGTTATTAG 96805 28 100.0 32 ............................ GTTATATCGTTTGATGTTTGTCTCGACAGCTT 96865 28 100.0 32 ............................ AAAGCGATCAGAGTTTATGATGTGAACTTTTT 96925 28 100.0 32 ............................ TCGCTGAGCGATCACAAGAAACCAAAAACGAA 96985 28 96.4 32 ...........T................ TTAAGCGGATCCGTGGTAGTGGACTACCAAGC 97045 28 96.4 32 ...........T................ CAGAATCTTGCGGCTGTAAACATCAGCCCAGA 97105 28 96.4 32 ...........T................ CGCATCACCACAAGCTCTCTCTGTCTCTATAC 97165 28 96.4 32 ...........T................ TACCGCGTGACGCGTCACGCTAATTTTTGCGT 97225 28 96.4 32 ...........T................ ATCAGCAACAGCGCCGGGTATTCGCACTGCAC 97285 28 100.0 32 ............................ TGAGAGGGAATCAAGTTGTCTAGAGAATTAGA 97345 28 100.0 32 ............................ AAGAAGCGCGGTAGCCTGTAGCATTCATCATT 97405 28 96.4 32 ...........T................ TGAATCAATCACCGCAGCAAGGGCGGCTTTAG 97465 28 96.4 32 ...........T................ GTTTCTAAGGCTTGTCCTGCGCCCGACGTTGT 97525 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 97585 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 97645 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 97705 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 97765 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 40 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //