Array 1 2294181-2299092 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009249.1 Corynebacterium phocae strain M408/89/1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2294181 29 100.0 32 ............................. CTTGTTGAGTACGCGGGTCGGCTGTGCTACCG 2294242 29 100.0 32 ............................. CATGGTGCAATCAAAATCATCAGAAAGTTCCG 2294303 29 100.0 32 ............................. TACTGGTTTATGTTCCTGGCCTGCCAGAATAG 2294364 29 100.0 32 ............................. GCTGGCGCAGCTGCGTGACGTGGCCGCGCTCT 2294425 29 100.0 32 ............................. CCGTATCTTGACGGATACTTTCACTGTTCAGT 2294486 29 100.0 32 ............................. AAAATGCTTAACTCCGGCGAACTCGCCGGGTT 2294547 29 100.0 33 ............................. GTTGTCGAACACTGACGCGTAAGCCACGATTTC 2294609 29 100.0 32 ............................. CAGCAAAACCAGCAGGGCGTGTTTTATCGTTC 2294670 29 96.6 32 ............................G TCATCAAGGTTTCCGAGGTTCACTGCCATTTT 2294731 29 100.0 32 ............................. CCCAGGTGTCTGCCAGTAGCGCTAGATACATC 2294792 29 100.0 32 ............................. TCCAGTGACGCCCTGAACCTGAAGAAGGTTCT 2294853 29 100.0 32 ............................. TAGGCCAAAAGGCTTTCTTTCCTAATCCATCT 2294914 29 100.0 32 ............................. TCCGCGCTGGTGTTCGCCCCGGCGGTGTGGTG 2294975 29 100.0 32 ............................. GCGCTTGCCAAGTGGGTGCGCTGGGGCCGTAG 2295036 29 96.6 32 ............................T GACCTTTACGGTTAGAACCCTCTACTTGCGTC 2295097 29 100.0 32 ............................. CCCAGCAGCAGGTGGCTCACCCAACCCCCAGG 2295158 29 100.0 32 ............................. TCTCGGACGCCCGCGACCGCGCCCGCGCCAAG 2295219 29 100.0 33 ............................. TCATGCAGGCGGTCCTCTAGGTCCTGCCAGCTC 2295281 29 100.0 32 ............................. CCATCAGGAACACCTACTCATTGAGGGACGGT 2295342 29 100.0 32 ............................. CAGTCATCGAACTGCGCTGCGCCCGACAGAGT 2295403 29 100.0 32 ............................. CTCCCGAAAGCCCCCGACCATCAGCCGCTGGG 2295464 29 100.0 32 ............................. ACCATGGACTTCGCGTTCGAGCGCAACTCCGT 2295525 29 100.0 32 ............................. AGTCAGTCCAACCAGTGGGAAGACGGAGAAGG 2295586 29 100.0 32 ............................. CCCACGGCCGGCTCGCCATCGAACCGAGGATC 2295647 29 96.6 32 ............................T GATTAACGCGGCTGGCACTGTTAGTGTCCAGG 2295708 29 100.0 32 ............................. TTGTAGAGCGTATTCCTGGTCACTCCCAAGTA 2295769 29 100.0 32 ............................. AGCTTGAATTATCATAGAAATCTATAGAAATC 2295830 29 96.6 32 ............................T GGTGTCAAGCATTGGCTGGATACCAAAAGTAA 2295891 29 100.0 32 ............................. CAGGCCACCACCTACTGCGCCTCTATAAAGGC 2295952 29 100.0 32 ............................. GGGTTGTAGCGCACGTATGGTTTCACCGCGCC 2296013 29 100.0 32 ............................. AATCAGTACTTTGCTGGTGGGCCGTTCCAGGG 2296074 29 96.6 32 ............................T GGTGTCAAGCATTGGCTGGATACCAAAAGTAA 2296135 29 100.0 32 ............................. ATCGTCCATGGATAGACGGGCTGCAATGGTGT 2296196 29 100.0 32 ............................. TCCTGCGAATTCTCCACAGTGTCAGTCAAGGC 2296257 29 100.0 32 ............................. TCCGCGATGAACTCCGGATCGGAGTCCACCAG 2296318 29 100.0 32 ............................. AGAAAGGCCCTAAAATGGTCACTCTCATCAAG 2296379 29 96.6 32 ............................T TGCGCTGGTTCACCCGCACGCGATCCCAGTTG 2296440 29 100.0 32 ............................. ATCACTTCGTCATCACCGTTCTGGTAGTCGAT 2296501 29 100.0 32 ............................. TTGCTATCCATAGTCCGATAAGCAAAAGACAT 2296562 29 100.0 32 ............................. TCTTGCAGCTTGCTGGCACGCTCCTCGAACTT 2296623 29 96.6 32 ............................T CACCTCACATCACGCACAGCAACCCAGGTGAC 2296684 29 100.0 32 ............................. AATGAGGGTCACAAATCCAAGTGAGGCTTTAT 2296745 29 100.0 32 ............................. TCATCACGCGCCTCGGGGCTGTTGAGAATGTA 2296806 29 96.6 32 ............................A CGACCTGGTGTGGGAGACGTGTGCCTGTAGTC 2296867 29 100.0 32 ............................. ATTAGGAAGTGGAAACGCCGTCACGCTGCTGC 2296928 29 96.6 32 .......T..................... GTGTTGTGGGTAGGAATAAAGCCATACCCAGA 2296989 29 100.0 32 ............................. AACGGGTGTGTGAGCTGACGGCGAATGTTCGG 2297050 29 100.0 32 ............................. AAGGCTGACGCCCTTGATACCCAGGAACAAGA 2297111 29 100.0 32 ............................. GAGGTTCGCTGAGGAGATGAAAGATGAGATCC 2297172 29 100.0 32 ............................. TCCATTGGGTCGATCTCAGTTAAGCGTAGCAG 2297233 29 100.0 32 ............................. CGGCTGGATACTCTGGCCTGGAGCGCTGCGGA 2297294 29 100.0 32 ............................. TGGCTGAACAAGAAAAATGGGACGAGCTGGCT 2297355 29 100.0 32 ............................. CTTTTCTCGTCTCTACCGCCAATCTGTTATGA 2297416 29 100.0 32 ............................. TATGGAGAGTTGGCTGAGTGGTCGAAAGCACT 2297477 29 100.0 32 ............................. TCGACCAGAAGAAGGACCAATCATGACCACTA 2297538 29 100.0 32 ............................. ACACCCCCTGGTGCGCCCCCGGGGACTCGAAC 2297599 29 96.6 32 ............................T CGTGAACGCTACTACCACCAGGTGGCGCGTCA 2297660 29 100.0 32 ............................. TTCACCTCCGTCAGCAGCTTTGGCACCAACCA 2297721 29 100.0 32 ............................. CTCATTGGCCTTATCGTGACCGCCCTTGCAGC 2297782 29 100.0 32 ............................. CGGGGCCCTGCTCGTAGAAATGGCGGCGCACG 2297843 29 100.0 32 ............................. ACTCTCACCACTCCGGGGTTTTACCCGGTGCT 2297904 29 100.0 32 ............................. TGGGGCTCAATGCTATCCAGTCGTTGCAGCAG 2297965 29 100.0 32 ............................. TCCCGCGATGGCGGTGGTGGCCAGCAGCAGTC 2298026 29 96.6 32 ............................T CAGCAGCCCGTAGAGGGCTACGCCTACTAGGA 2298087 29 100.0 32 ............................. TCCTGCGAGTTCTCCACAGTGTCAATCAGGGC 2298148 29 100.0 32 ............................. AGTTGACCGCGCCCACGGGTTACCAACCCTCA 2298209 29 100.0 32 ............................. CGACCACCATTAATCGCGGCCAGCAGTGGCAG 2298270 29 100.0 32 ............................. GTGGAGATGGGGGGTGGTCGTGGTAATGGTCA 2298331 29 100.0 32 ............................. ACCTCGTTTCTTCTGTCATCTTGATAGTCCGT 2298392 29 96.6 32 ............................T TCTGGTTTAGGCCTGTGACCTGCGCAAACGAA 2298453 29 100.0 32 ............................. TAGCAGCAGCCGTTTCAATAATACTCATCGTG 2298514 29 100.0 33 ............................. CGCGCTAAGCGAGTTCCGTACCGGCGCGTGCAA 2298576 29 100.0 32 ............................. TACTGGTTTATGTTCCTGGCCTGCCAGAATAG 2298637 29 100.0 32 ............................. CAGCGTGCGGTTAATCACGTCCGGCTCAAGTT 2298698 29 100.0 32 ............................. CTCACCCTGCGCAAGGCCATTAGTGGCCCCAA 2298759 29 100.0 32 ............................. CACTCGGACAAGCCGCGATTGCGCTACTCTCC 2298820 29 96.6 32 .........A................... CGTCCGTAGATGGGGTTGCGACTTGTAGAGCT 2298881 29 96.6 32 ............................T GAGGTGGCAAGGTGTCGTTCTTAGACTGCTTT 2298942 29 100.0 32 ............................. CACGGACTTGCATAGCAACGCGCCCATCAAAC 2299003 29 100.0 32 ............................. AGGCCACCGCCTACGACAGGCCACCGGGGAGC 2299064 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 81 29 99.4 32 GCCTTCCCCGCATGAGCGGGGATGATCCC # Left flank : CTTCGCCGAGCTCCCAGTTGAGAACATCGGCTGGGCAAAGTAACCCCCTAATCCCCCTTAAGTCCGCCTTCTTGGGCTAGACTGCGAAATCCCCACCCCTGGTTTTAATAGCCTACCGGGTGGGGTTTCGAGATTAGTACCCCGGGCGCTCTACCCGATAGCGTCGAGGATCAAAACGAAAAAGCCAACCCCCGGATCCGTGAAAAGATTTGGACACCGGTAGCCGGGAACCTTGGCTCCGGACGTACCATCATAACCCTCCCCAACCGCGAGTCGGAGCAGGGCTACGACTTCGACTTGCTCAACCACGAATGGGTACTAGAAGATATGGAGCGGCTCAAAGTGGTCCGCCGTCCGGGAAAACCAGGGCAAAACGAACGGATGCCCCAAGCCCGGCTGGTCCCGATCCGTAAGAAAGAGACACTACGGACGCTAGTTGTTGAGAAGAGAAAGTAAAGCTAAAATTAGTCTCCAGTGACCGAAACTCCAGGTCAACAAGT # Right flank : CCTCTGCGGACTGGATCTGGGACATGGCCTCGGGCCTTCCCGACGCCCCCGACCTCAACGCCGACGCCTGCTGCCAGGTGGCCCACGCCATCGGCGTCCACCCGCTGGAGGCGGAATTCGATTACTTCACCGCAGTTGATGACAACGCCCCGGAGGACAACGCCGGCGCTGGCATGATTGGTACTATCGAGTACAACGCTTCGACTCTCTACCGCTACGCCACCATTAACGTGCCGGCGCTCATTGAGTCGCTAGGCTCTGTCGATGCCGCCGCGAAGGCCGTCGCCGCCTTCGCTGAGTCCTTTGCAGTCTCTATGCCAACCGGTAAGCAAAACACCTTCGCGAACCGCACCCGGCCAGAATTCTTCGCAGCTTCAATCCGAACTGACCAGCCGGTTAACCTTGTCGGCGCTTTCGAAGACGCTGTGAACTCCCGCGGCAGCCGTGTGGCTGAGTCAGTCTCGCGTCTGGTCGATCACTCACTGGACTCTGACAAAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTTCCCCGCATGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2302497-2302708 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009249.1 Corynebacterium phocae strain M408/89/1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2302497 29 100.0 32 ............................. CGGGGGGTGGAAAGACTTACTGGGTGAAATCG 2302558 29 100.0 32 ............................. GGGTTGTAGCGCACGTATGGTTTCACCGCGCC 2302619 29 100.0 32 ............................. GCAGCAGGGCGCGGAACCATCAGGCCCAGGCG 2302680 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GCCCTCCCCGCACGAGCGGGGATGATCCC # Left flank : GAATCATGGTTTGAGGACTCCGTTATCCATCTCTGGGACAACCTCCATGACAGAGTAGTAGGCGGCACTAACTTCGAATTTGACTCATGATAACCCTAGTTCTATCCTCATGCCCATCCTCGCTTCGTGGCCACCTCACCCGGTGGTTAACCGAAGTATCCGCCAACGTATTCGTCGGAAAAGTCACCCCCCGGATCCGTGAAAAGATTTGGACACTGGTCACCGAGAATCTTCGCTCCGGACGTGCGATCATGACCTTCCCGAGCCGGGAATCAGAGCAGGGCTACGACTTCGAAGTACTCAACCACGAATGGGAGGTAGTGGACGCTGACGGACTGAAACTAGTCCGTCGCCCAAGGAAAACAAGACCTTCGCAAAGCGACGCACCTAAGCCCGGATGGTCCCGAGCTGGAAGGAAAAGGCGCTTCGGGCGCTAGTTGTCACGAAGAGAAAGTAAAGCTAAAGTTAGCCACGAGGGACAATAATTGCAGGTCAGCAAG # Right flank : CAGCGCAAACTAAAAATGTTTACTTTTTTCTAGAAAACCCCGTGATAACATCGTAAGTATGTTTAAGAAAATGAAAAAGAGCCTTATTGCGCTCGCGGCACTTGCCGTCACCACAGCCCCTGTCCCTGCTACCGCCAATCCAGTAGATCAGTTGTCATCTACTGCACAGATGTCTTCGAACTCACTAATCAGTGAGGTCTCCAAGTTCATCCCCACCATTAGGGTGTCTTCTGCACCAGCACCTCAGACTGGAAATGTAGTTCTTCATCAAGGAGACCGCATCAACTTCCCTGGCCAAGGAACTTGTACTGTAGGATGGATTGATCACAGCACCCGGCGCGCCTATACAGCACGTCACTGTGGTCGAGATGGTTCTACTGCCACCACTGTCTCCAACCAGATGGTAGGTGTCATCCGACACAGCCCCCTTTCTCATGGGAAGAGCATCAATGATTACGATGTCGCTTACATCGAGCTAAGCCCTAACGTCACCCCAGGAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCACGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //