Array 1 220068-218601 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZHV010000027.1 Shewanella algae strain CCUG-12945 526_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 220067 28 100.0 32 ............................ ACCCAAATCAAAAGAATAAGTGTAGTTAGGAA 220007 28 100.0 32 ............................ GGCTGAACTGATGGAGCAGGGGGCTTTGCAAT 219947 28 100.0 32 ............................ AATGGTTGACTCGAAACTACCGGGGACGCGAA 219887 28 100.0 32 ............................ AAGCAAGGGTAAGCCAAAAGAGATGCAAGAGA 219827 28 100.0 32 ............................ TGCCGCAATACACAGCTATTTGATTTATCAGC 219767 28 100.0 32 ............................ AGAGTCTGCACTTGTGCTTTTAGGTCTTCCAA 219707 28 100.0 32 ............................ TGATTGCGCTCATATTCAATTCGGCGCCTTTC 219647 28 100.0 32 ............................ AACCGCCCCGAATCTCACCGGTGTCACAGCAA 219587 28 100.0 32 ............................ ACGAACGGGACTCGTACGTACTCGCCCGCAGT 219527 28 100.0 32 ............................ AGTGTGTTCCTCTGGCGATTTTGGCAGTCGAG 219467 28 100.0 32 ............................ AACCAGAAGTCAGCGCCATAATCAATGACCTG 219407 28 100.0 32 ............................ CTCAGACTCCAGGTTGGCTATGGCCATCAACT 219347 28 100.0 32 ............................ CATCATGTAAGCCAGGTCATCACAGCTGAGGA 219287 28 100.0 32 ............................ TTGAGCGAGGGAACCATCTATCGCCGTTCGAT 219227 28 100.0 32 ............................ CGAAGGGGAAGGCCGTTTTGCCCTTGCCGTAT 219167 28 100.0 32 ............................ AGTGAAATCCTGTTGTTCGTTTACAGCAAAAA 219107 28 100.0 32 ............................ TGCATCGCGTTGCGTCTGAATACAGGAGGAAT 219047 28 100.0 32 ............................ ATGGTGACTGAAACCAATGCCCCAGGTAACAA 218987 28 100.0 32 ............................ AACCACCTCGAAAGGCGCAAAGTTGACATTAA 218927 28 100.0 32 ............................ TGTGCGAGCAGCTTGTCGGTGCTGAAACAGAT 218867 28 100.0 31 ............................ TTGGCCATGTATGCCCTATCATTGGCAGGTT 218808 28 96.4 32 .........T.................. CTTAGTATTGTTTCGGCTCGCTGGTAGCCCAA 218748 28 96.4 32 ............T............... AACTGATGATTTTGCCCAGTCGATTGCTTGCC 218688 28 100.0 32 ............................ AGGATGACAAATTGATAGCAGGAGTTAATTAT 218628 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.7 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : GAAATGCAAAAACCTTTGCTGGCCTCTGTGACTAT # Right flank : GTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAAAATCCGAACGTCTTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAATATAGCGGCCCGGCTCAAGGCAGCATGTCTACTTGCAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGACAGTTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCAGCGTAGCTAACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1868-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZHV010000028.1 Shewanella algae strain CCUG-12945 526_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1867 28 100.0 32 ............................ ATACGAGTGACAAAGGCTTGGAGAATGACGTT 1807 28 100.0 32 ............................ AAGAAAACCCGTGTAATCCGTCTTCCTGATAA 1747 28 100.0 32 ............................ ATTGCCAGCGCCGTAGAGCTCTCCCAGGAACA 1687 28 100.0 32 ............................ TATCGAAGCCAAATCACAAGGCCGACCATCGC 1627 28 100.0 32 ............................ ATTAAGAGAACAAGTAATAAATTCAAAATTCA 1567 28 100.0 32 ............................ TACACAGTGCGCCGGGGGTTGTGGTCTTCTGC 1507 28 100.0 32 ............................ TCAGCTCCCGCACTTACTTGTGGAGATACTCA 1447 28 100.0 32 ............................ TGCAAGCAGCTTCTTTCGTAGTGTTGACGTTC 1387 28 100.0 32 ............................ AACTGGCGGGCAATAAATTGCTTGGTCATATC 1327 28 100.0 32 ............................ AAACGGATTGAAGTAATGAATATGACGGCCAG 1267 28 100.0 32 ............................ TGCCGCGCCTAACTTTAACCGTCACAATTAAC 1207 28 100.0 32 ............................ TCTGCAGTCAGAAATTTAAGGGTGACTTGTTC 1147 28 100.0 32 ............................ AAGCAGCAGCTGCTGCCTGCGATTGTCACCGA 1087 28 100.0 32 ............................ TGGGTGACAAGTGACGGAAACGCCTTGGCGAT 1027 28 100.0 32 ............................ ATCCTCGTATTCCTTTTGCCGGGCCGCGCCGT 967 28 100.0 32 ............................ TTAATCAACATCCGAACGCCCCCAGGATTTCA 907 28 100.0 32 ............................ AGCCTCTTTGTAAGCGGCCACCTTGTCACCAC 847 28 100.0 32 ............................ TTCGCGCTGGGCGCTGGTTGCTACGCTGCCCA 787 28 100.0 32 ............................ TGTTAAAAGCGTCCGAAAGTGAATTGGGATAG 727 28 100.0 32 ............................ TCGAAGGCCTCCTTTAAGATTGCCCCGGCGTT 667 28 100.0 32 ............................ ATCAAGTCACAGGCGCGGCTGGCGCTGATAAC 607 28 100.0 32 ............................ AGCTGGGATATATCAAGGAAGGGCGATAAGAA 547 28 100.0 32 ............................ GCTGAGGAAGCCTACCAAGCAAGGCTATCTGA 487 28 100.0 32 ............................ ATTTGCGCCTTGAAGTGTAGAGCGGTTGATTC 427 28 100.0 32 ............................ AATTTCAGGCCGCCGCTATGTTTCTCCCCAGC 367 28 100.0 32 ............................ GCCCGAATTTCAGGCCGCCGCTATGTTTCTCC 307 28 100.0 32 ............................ AATTAAAGGCGCTACAGGTTCCACCACTGGGC 247 28 100.0 32 ............................ GGCAGTAACCGATGACTCAATGGCGTTAACCA 187 28 100.0 32 ............................ AATAAAGGCCATTAACGCAGGGATACCGATTA 127 28 100.0 32 ............................ TCGCGGCGGTGCAAGTCTGCATTGAGTTTGTT 67 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 31 28 100.0 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGCAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAATATATCCGCAAAGTACACCTGTGGATGGGCCGTTCGATTGCTACGGGTTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGTACTTTTAAGCACCAAAGGGTGAGTCTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGATTTATTCTATT # Right flank : ATGCAAAAACCTTTGCTGGCCTCTGTGACTATGGTTCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //