Array 1 140544-138550 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUGP01000006.1 Chryseobacterium shigense strain DSM 17126 43418_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ==================================================== ================== 140543 47 91.5 30 A..T............C..............A............... TTATGTTCAGTATTTATGTTCAGTATTTAT 140466 47 100.0 30 ............................................... TGCCCGTCAATAGTATTCGGTAGTCTACCG 140389 47 100.0 30 ............................................... TAAAACGTGTCTTCATAATTAAACTCTATA 140312 47 100.0 30 ............................................... TATTGGAGTTGCTGATTTGCTTATATTATT 140235 47 100.0 30 ............................................... CGGCCGTCAAAGTTTGAAAAGTACTTAATA 140158 47 100.0 30 ............................................... TATGTTGAGTAGATCAGGATATACTTTAGG 140081 47 100.0 30 ............................................... ATACAATAAATTAACAATTGAAGAATTTTT 140004 47 100.0 30 ............................................... ACTATTGTGGAGGGTGAATTTGATTGCATG 139927 47 100.0 30 ............................................... AAACATCTGAAAGAAATTCAAAACTTTCTT 139850 47 38.3 52 ..................NNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNTTCGTGATTAGTCACAGCTTAGTTTTCTAATTGAACATCGATGATTTT 139751 47 100.0 30 ............................................... GTGGAATGATTAAATCCAAATCCATCAGAC 139674 47 100.0 30 ............................................... AGACGGGTAGCAAGCAAGGCTTAGTGGTGC 139597 47 100.0 30 ............................................... TTTGCCTGCGATGAACCGGTGCAGACTTAC 139520 47 100.0 30 ............................................... TTCGGGCTGCTGACTCACTTATACGTTGCT 139443 47 100.0 30 ............................................... CCTCGACCAAACAATCATAAAAGCTATTAA 139366 47 100.0 30 ............................................... CGATATTTTGGAATTCTGGCCAAAAGTAAT 139289 47 100.0 30 ............................................... AGGCATTCCTAACAACTCAGTTGTAGGAAC 139212 47 100.0 30 ............................................... TACGAAAACTGGGCCCGCTTTATAGATAAC 139135 47 100.0 30 ............................................... CGGTTGATTCACACCCACAATTAAAAAACT 139058 47 100.0 30 ............................................... AGTTAATCAAAGAATTTAACAATCAAACCG 138981 47 100.0 30 ............................................... TCCTGAAGGTATTATCCAGATCAGGGAAAT 138904 47 100.0 30 ............................................... TTTGACAAATTATCTGGCACACGATGGAAA 138827 47 100.0 30 ............................................... CCAGCGCAAATGAAAGCTTTCTTCCAACGT 138750 47 100.0 30 ............................................... TGGAGACTGAATTAAAGCCAAATATCTTTA 138673 47 100.0 30 ............................................... AAGATTTGCACCTCTAAGATTTGCACCTCT 138596 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ==================================================== ================== 26 47 97.3 31 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Left flank : AACGCTTAAATCTCCTGATTTTACGTTAAGTGTTCCCCAACGAGGAGCCATTCCACCTTTGTGAAAAGCCTTCCAGTTTACTACAGAAGCAGCAACATCCACTGGCAATACTTCACCTTTACTTTCAGCTACTGTCTGCTCCGTAGCTGTAGATGCAGTTCCTGCTGATTTGTCTTTATTACATGATGCTGCAAGCAATCCTACTCCTACTAATGCAATTACACTAAGTTTTTTCATATTATTTATTGTTTTAAAAAATTTAATTAAAATACTAAATTTCAGGATTCAAAAATATAAAAACCTCACCAATTATCACCTTACCATACATCAAGAAATAGAATTTTTCATATTTTCCTTCCGTTATACAATATGAAATATTGAGAAAAAAGAAAATCTATAGCATTTCAATCCTCTCTAAAATTGCGTATTTTAGCTATTTGCATCTATCATAGCTCTACGGTTAATCAAATAAATTTAGGTGCAGAGTAAGAGTGATATTT # Right flank : CTCAAAAAACAATCTACTGAAAATCAGCAGATTGTTTTTGTTTTTAGGATTTAAAATTTAGAATAATTCAAGCTGTTGGAAGGTTGGAGGCGGTTCTTCTTTATTTCTGGCAAAGAAAATCTCAATATCGCCAAATTGTTTATCCGTAATACACATAATTGCCACTTTTCCTGCTTTTGGCAACATGAATTTTACTCTTTTAATATGAACCTCAGCATTTTCACGACTTGGACAATGGCGGACATACATCGAAAACTGAAACAATGTAAATCCATCATCGATTAAAGCCTTACGAAAGCGATTCGCATCCTTCATATTAGCTTTAGTCTCGGTCGGTAAATCATACAATACTAAAACCCACATAATTCGGTAAGCATTAAACCTTTCGGCGTTCATATCAGTTCAGGATAAGAGATTAATCGCTTTTCTCCTGTGTAACATCTATAAAGCGAAGTTACAGTTGTTTTTACAGCCACCAATAATGGTCTTATTTTGTCATC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-33] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //